genome.fa.s3420.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003420.1 Hibiscus syriacus cultivar Beakdansim tig00007198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163802

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3569--3660	23	3.8	23	69	19	62	26	6	3	64	1.33
3786--3823	13	3.0	13	82	17	53	15	2	5	76	1.08
8996--9062	22	3.0	22	95	2	116	19	26	28	25	1.99
11873--11946	34	2.2	33	78	7	76	14	14	21	48	1.80
11899--11954	10	6.2	10	74	19	52	16	10	17	55	1.69
11906--11953	24	2.0	24	95	0	87	14	8	18	58	1.61
11889--11957	34	2.0	34	91	0	111	15	11	17	55	1.70
11908--11967	24	2.5	24	86	5	77	16	10	15	58	1.63
13044--13078	10	3.5	10	96	0	61	17	8	11	62	1.52
24051--24138	42	2.1	42	82	4	106	21	31	12	34	1.91
26387--26498	60	1.9	59	85	5	154	32	14	4	49	1.63
26387--26530	59	2.4	60	79	10	145	31	16	4	47	1.68
36870--36947	41	1.9	41	89	0	120	19	16	25	38	1.92
36930--37024	19	4.8	20	67	13	70	20	20	20	40	1.92
36903--37020	60	2.0	61	84	5	159	19	18	19	42	1.90
37850--37891	19	2.2	19	95	0	75	38	16	4	40	1.70
37922--38037	51	2.3	51	96	0	214	32	16	21	29	1.95
38110--38150	5	7.5	6	91	8	54	0	19	51	29	1.47
38275--38308	17	2.0	17	100	0	68	35	17	23	23	1.95
40492--40535	20	2.2	19	84	15	54	25	4	6	63	1.38
43972--44032	28	2.2	28	85	5	81	37	8	1	52	1.41
44649--44675	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46517--46575	20	2.9	21	85	7	86	18	27	23	30	1.98
46538--46607	10	7.3	10	69	24	53	15	28	28	27	1.96
46518--46582	30	2.2	29	86	13	89	16	27	26	29	1.97
46538--46605	19	3.5	20	86	9	81	16	26	29	27	1.97
46604--46661	5	10.8	5	78	14	62	18	51	22	6	1.70
46604--46668	22	3.0	22	100	0	130	18	49	23	9	1.76
46658--46695	7	5.4	7	96	0	67	18	28	26	26	1.98
53844--53942	10	10.3	9	75	12	72	17	27	26	29	1.97
53845--53942	19	5.1	19	77	14	69	16	27	26	29	1.97
53843--53917	29	2.5	30	89	8	118	17	26	26	29	1.97
53939--53991	5	9.8	5	76	15	52	18	50	22	7	1.72
53956--53998	22	2.0	22	100	0	86	18	48	23	9	1.76
53938--53986	17	2.9	17	100	0	98	18	48	22	10	1.77
53988--54025	7	5.4	7	96	0	67	18	28	26	26	1.98
55645--55697	3	17.0	3	81	18	56	3	30	0	66	1.10
56438--56472	18	2.0	17	88	5	52	68	0	28	2	1.04
57344--57430	3	29.3	3	97	2	167	66	0	33	0	0.92
59438--59481	20	2.3	19	84	7	54	52	0	4	43	1.22
66960--67083	37	3.2	37	86	13	187	28	15	16	39	1.89
66966--67091	43	3.1	43	93	6	210	26	15	16	41	1.88
74533--74568	13	2.8	13	95	0	63	47	2	13	36	1.58
77035--77180	44	3.4	44	86	7	219	20	19	21	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77035--77180	23	6.7	23	80	10	182	20	19	21	39	1.93
77042--77188	65	2.3	65	84	4	201	21	19	20	38	1.94
77919--78063	21	6.6	21	76	16	91	27	22	23	26	1.99
77896--77993	42	2.4	42	84	6	121	30	23	22	23	1.99
78010--78103	21	4.5	21	75	12	86	23	22	24	29	1.99
88823--88861	16	2.4	16	100	0	78	33	38	12	15	1.85
90226--90317	38	2.4	38	96	0	166	34	14	16	34	1.89
92948--92990	20	2.2	20	100	0	86	20	25	25	27	1.99
93157--93205	19	2.5	20	83	6	66	38	2	2	57	1.22
95496--95542	21	2.2	21	96	0	85	27	25	31	14	1.95
95529--95568	9	4.2	9	81	12	53	37	32	17	12	1.87
95530--95568	20	2.0	20	94	0	69	38	30	17	12	1.88
95681--95780	29	3.4	29	93	2	157	17	30	30	23	1.96
95853--95942	46	2.0	46	93	0	153	25	44	10	20	1.82
95996--96057	29	2.1	29	93	0	106	17	32	32	17	1.94
98514--98591	38	2.1	38	100	0	156	41	15	5	38	1.69
109147--109222	23	3.3	23	88	0	116	26	17	13	43	1.85
109267--109309	22	2.0	21	82	8	52	30	18	25	25	1.98
114778--114811	15	2.3	15	100	0	68	23	11	32	32	1.91
116827--116855	15	2.0	15	93	6	51	20	27	6	44	1.77
125314--125374	26	2.3	26	97	0	113	31	18	32	18	1.94
127512--127992	229	2.1	228	95	1	856	45	7	7	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128024--128096	23	3.2	23	92	0	119	35	5	20	38	1.76
128514--128586	23	3.2	23	92	0	119	35	5	20	38	1.76
127791--129676	490	3.9	490	97	0	3521	40	7	11	40	1.70
129001--129073	23	3.2	23	92	0	119	35	5	20	38	1.76
127791--129676	977	1.9	977	97	0	3560	40	7	11	40	1.70
129429--129473	22	2.0	22	83	8	56	42	11	8	37	1.72
129491--129563	23	3.2	23	90	0	119	35	6	20	36	1.80
131827--132171	105	3.3	103	89	4	489	22	18	26	32	1.97
132775--132932	68	2.4	66	84	4	201	37	8	20	32	1.84
132776--133229	65	6.7	67	73	13	250	39	11	18	30	1.86
132907--133169	36	7.4	36	75	10	220	41	13	17	27	1.87
132847--133235	138	2.8	137	83	2	458	40	12	18	29	1.87
132943--133127	102	1.8	102	85	2	264	41	13	16	28	1.86
134117--134160	22	2.0	22	91	8	72	27	11	22	38	1.88
134770--134814	11	4.0	11	88	11	65	0	11	8	80	0.92
134762--134799	9	4.6	8	87	12	51	0	10	5	84	0.77
134775--134821	11	4.3	11	88	0	58	0	12	8	78	0.95
135988--136035	17	2.9	17	87	3	62	54	10	20	14	1.70
137413--137440	5	5.6	5	100	0	56	82	0	0	17	0.68
139127--139169	18	2.5	17	85	7	61	67	2	4	25	1.22
139950--140022	23	3.2	23	90	0	119	35	6	20	36	1.80
139938--140022	46	1.9	44	85	7	118	38	5	20	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140350--140611	135	1.9	135	98	0	506	47	8	11	32	1.71
140513--140557	22	2.0	22	83	8	56	42	11	8	37	1.72
140575--140645	23	3.1	23	87	0	115	38	7	18	36	1.78
140957--141022	34	2.0	34	82	14	84	30	4	4	60	1.37
141144--141190	13	3.3	14	79	11	51	61	2	8	27	1.36
146591--146748	84	1.9	84	89	0	244	43	19	29	7	1.78
146703--146857	27	5.7	27	83	1	166	47	15	28	8	1.74
146703--146857	82	1.9	81	81	1	184	47	15	28	8	1.74
151464--151506	14	3.1	14	83	6	61	41	0	0	58	0.98
154096--154148	26	2.1	25	82	6	63	54	3	7	33	1.46
154656--154695	13	3.0	13	89	10	55	37	2	0	60	1.11
156721--156751	14	2.3	14	94	5	55	35	3	25	35	1.72
158055--158135	24	3.2	24	63	27	58	27	1	29	41	1.63
161427--161451	3	8.3	3	100	0	50	36	32	0	32	1.58

Tables:   1

The End!