Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003421.1 Hibiscus syriacus cultivar Beakdansim tig00007204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 882701
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
File 3 of 5
Found at i:547457 original size:40 final size:40
Alignment explanation
Indices: 547408--547583 Score: 138
Period size: 40 Copynumber: 4.2 Consensus size: 40
547398 CTGCTCGTTT
*
547408 GTGTTGAGGAGATCTAGTCGGTGGATAACATTGTTCCTTC
1 GTGTTGAGGAGATCTAGTTGGTGGATAACATTGTTCCTTC
* * *
547448 GTGTTGAGGACGTCTACCCATATTTGG-AGATAACATTGTTCCTTC
1 GTGTTGAGGA-G---A-TC-TAGTTGGTGGATAACATTGTTCCTTC
* * ** * *
547493 GTGTTGAGGAAATCTGGTTATCTGGATGACATTGCTCCTTC
1 GTGTTGAGGAGATCTAGTT-GGTGGATAACATTGTTCCTTC
** * * * *
547534 AAGTTGAGGAGATCTAGTTAGTGGATGACCTTGTTCTTTC
1 GTGTTGAGGAGATCTAGTTGGTGGATAACATTGTTCCTTC
547574 GTGTTGAGGA
1 GTGTTGAGGA
547584 CGTCTAGCCG
Statistics
Matches: 104, Mismatches: 24, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
39 3 0.03
40 35 0.34
41 32 0.31
44 1 0.01
45 28 0.27
46 5 0.05
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (40 bp):
GTGTTGAGGAGATCTAGTTGGTGGATAACATTGTTCCTTC
Found at i:547540 original size:41 final size:40
Alignment explanation
Indices: 547480--547562 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 40
547470 TTTGGAGATA
* ** *
547480 ACATTGTTCCTTCGTGTTGAGGAAATCTGGTTATCTGGATG
1 ACATTGCTCCTTCAAGTTGAGGAAATCTAGTTA-CTGGATG
* *
547521 ACATTGCTCCTTCAAGTTGAGGAGATCTAGTTAGTGGATG
1 ACATTGCTCCTTCAAGTTGAGGAAATCTAGTTACTGGATG
547561 AC
1 AC
547563 CTTGTTCTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 8 0.22
41 28 0.78
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.35
Consensus pattern (40 bp):
ACATTGCTCCTTCAAGTTGAGGAAATCTAGTTACTGGATG
Found at i:547568 original size:126 final size:127
Alignment explanation
Indices: 547341--547589 Score: 320
Period size: 126 Copynumber: 2.0 Consensus size: 127
547331 AATATGGGTA
* * * *
547341 ATTTGAAGACAACATGGTTCCTTCGTGTTGAGGAAGTATGATTGTCTGAATATGACACTGCTCGT
1 ATTTGAAGACAACATGGTTCCTTCGTGTTGAGGAAATATGATTATCTG-AGATGACACTGCTCCT
*** *
547406 TTGTGTTGAGGAGATCTAGTCGGTGGATAACATTGTTCCTTCGTGTTGAGGACGTCTACCCAT
65 TCAAGTTGAGGAGATCTAGTCAGTGGATAACATTGTTCCTTCGTGTTGAGGACGTCTACCCAT
* * * * * *
547469 ATTTGGAGATAACATTGTTCCTTCGTGTTGAGGAAATCTGGTTATCTG-GATGACATTGCTCCTT
1 ATTTGAAGACAACATGGTTCCTTCGTGTTGAGGAAATATGATTATCTGAGATGACACTGCTCCTT
* * * *
547533 CAAGTTGAGGAGATCTAGTTAGTGGATGACCTTGTTCTTTCGTGTTGAGGACGTCTA
66 CAAGTTGAGGAGATCTAGTCAGTGGATAACATTGTTCCTTCGTGTTGAGGACGTCTA
547590 GCCGTACTTT
Statistics
Matches: 103, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
126 62 0.60
128 41 0.40
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.36
Consensus pattern (127 bp):
ATTTGAAGACAACATGGTTCCTTCGTGTTGAGGAAATATGATTATCTGAGATGACACTGCTCCTT
CAAGTTGAGGAGATCTAGTCAGTGGATAACATTGTTCCTTCGTGTTGAGGACGTCTACCCAT
Found at i:547714 original size:61 final size:61
Alignment explanation
Indices: 547619--547747 Score: 206
Period size: 61 Copynumber: 2.1 Consensus size: 61
547609 ATTCGACATG
* * *
547619 GTTCCTTCTTGGTGAGGAAAAATAGTCGTTCTTGAAGGATTGTGAATATGAAGACAATTTT
1 GTTCCTTCTTGCTGAGGAAAAATAGTCATTCTTGAAGGATTGTGAATATGAAGACAATGTT
*
547680 GTTCCTTCTTGCTGA-GAAAAACTAGTCATTCTTGAAGGATTGTGAATATGAGGACAATGTT
1 GTTCCTTCTTGCTGAGGAAAAA-TAGTCATTCTTGAAGGATTGTGAATATGAAGACAATGTT
547741 GTTCCTT
1 GTTCCTT
547748 TTTTCTAAGG
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
60 6 0.10
61 57 0.90
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.36
Consensus pattern (61 bp):
GTTCCTTCTTGCTGAGGAAAAATAGTCATTCTTGAAGGATTGTGAATATGAAGACAATGTT
Found at i:548175 original size:102 final size:102
Alignment explanation
Indices: 548052--548242 Score: 269
Period size: 102 Copynumber: 1.9 Consensus size: 102
548042 TGAAACAAAT
* ** * *
548052 TTTTTTTTCAAGTGAAACAATTT-CAAAGTTTGTGTTTCGAGGGAAAATTATCTCAAGCGAGACA
1 TTTTGTTTCAAGTGAAACAATTTCCAAA-TTTGTAATTCGAGCGAAAACTATCTCAAGCGAGACA
*
548116 AAATTTGTTTTTAG-GAAAACAATCTTAAGTGAGATCAA
65 AAATTTGTTTTGAGAG-AAACAATCTTAAGTGAGATCAA
* * *
548154 TTTTGTTTCAAGTGAAACAATTTCCAAATTTTTAATTCGAGCGAAAACTATCTCAAGCTATACAA
1 TTTTGTTTCAAGTGAAACAATTTCCAAATTTGTAATTCGAGCGAAAACTATCTCAAGCGAGACAA
548219 AATTTGTTTTGAGAGAAACAATCT
66 AATTTGTTTTGAGAGAAACAATCT
548243 CAAATGCTTA
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
102 73 0.94
103 5 0.06
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.36
Consensus pattern (102 bp):
TTTTGTTTCAAGTGAAACAATTTCCAAATTTGTAATTCGAGCGAAAACTATCTCAAGCGAGACAA
AATTTGTTTTGAGAGAAACAATCTTAAGTGAGATCAA
Found at i:548274 original size:66 final size:66
Alignment explanation
Indices: 548199--548451 Score: 210
Period size: 64 Copynumber: 3.8 Consensus size: 66
548189 TTCGAGCGAA
* * *
548199 AACTATCTCAAGCTATACAAAATTTGTTTTGAGAGAAACAATCTCAAATGCTTATGTTTCAA-AA
1 AACTATCTCAAGCGAGACAAAATTTGTTTTGAGAGAAACAATCTCAAAGGCTTATGTTTCAAGAA
548263 GG
66 -G
* * * *
548265 AACTTTCTCAAGCGAGACGAAACTTTG-TTTGA-AG-AACAATCTCAAGGGTTTATGTTTCAAGA
1 AACTATCTCAAGCGAGAC-AAAATTTGTTTTGAGAGAAACAATCTCAAAGGCTTATGTTTCAAGA
548327 AG
65 AG
* * * * *
548329 CACTGTCTCAAGCGAGACAAAATTTGTTTTTAG-GAAAACAATCTCAAGTGGGATCAATTTTGTT
1 AACTATCTCAAGCGAGACAAAATTTGTTTTGAGAG-AAACAATCTCAA--AGG--C--TTATGTT
* *
548393 TTAAGAAA
59 TCAAGAAG
* * ** *
548401 AATTGTCTCAAATGAGACAAAACTTTGTTTCGAGAGAAACAATCTCAAAGG
1 AACTATCTCAAGCGAGACAAAA-TTTGTTTTGAGAGAAACAATCTCAAAGG
548452 TAACAGACAG
Statistics
Matches: 151, Mismatches: 22, Indels: 23
0.77 0.11 0.12
Matches are distributed among these distances:
63 7 0.05
64 45 0.30
65 4 0.03
66 31 0.21
67 7 0.05
68 3 0.02
71 2 0.01
72 30 0.20
73 21 0.14
74 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (66 bp):
AACTATCTCAAGCGAGACAAAATTTGTTTTGAGAGAAACAATCTCAAAGGCTTATGTTTCAAGAA
G
Found at i:551874 original size:21 final size:19
Alignment explanation
Indices: 551846--551886 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
551836 CATTGCAGGA
551846 ATTTATGGCCTCGAAAAAAG
1 ATTTATGGCCTC-AAAAAAG
*
551866 ATTTCATGGCCTCAATAAAG
1 ATTT-ATGGCCTCAAAAAAG
551886 A
1 A
551887 CCTTGATGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (19 bp):
ATTTATGGCCTCAAAAAAG
Found at i:556344 original size:20 final size:20
Alignment explanation
Indices: 556319--556366 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
556309 ATCCCTTTTG
*
556319 CTTTATTTTAGTTTTTCTTT
1 CTTTATTGTAGTTTTTCTTT
556339 CTTTATTGTAGTTTTTCTTT
1 CTTTATTGTAGTTTTTCTTT
556359 CTTTATTG
1 CTTTATTG
556367 CAGGCCTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.10, C:0.10, G:0.08, T:0.71
Consensus pattern (20 bp):
CTTTATTGTAGTTTTTCTTT
Found at i:562040 original size:20 final size:20
Alignment explanation
Indices: 562007--562054 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
561997 GAATCGTGGT
* * *
562007 ATTTTTTTCTGAATTTTTTC
1 ATTTTTTTCCGAATATGTTC
562027 -TTTTTTTCCCGAATATGTTC
1 ATTTTTTT-CCGAATATGTTC
562047 ATTTTTTT
1 ATTTTTTT
562055 TTGTTCCCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 7 0.30
20 9 0.39
21 7 0.30
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.67
Consensus pattern (20 bp):
ATTTTTTTCCGAATATGTTC
Found at i:562765 original size:3 final size:3
Alignment explanation
Indices: 562757--562823 Score: 82
Period size: 3 Copynumber: 21.3 Consensus size: 3
562747 GTATTTATTT
*
562757 ATA ATA ATA AT- ATA ATA ATTA ATA ATA ATA TTA ATTA ATTA ATA ATA
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA A-TA A-TA ATA ATA
562804 ATA ATA ATA ATAA ATA ATA A
1 ATA ATA ATA AT-A ATA ATA A
562824 ACAATTAATA
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
2 2 0.03
3 43 0.74
4 13 0.22
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:562802 original size:23 final size:22
Alignment explanation
Indices: 562757--562823 Score: 95
Period size: 20 Copynumber: 3.2 Consensus size: 22
562747 GTATTTATTT
562757 ATAATAATAAT-ATAATAATTA
1 ATAATAATAATAATAATAATTA
*
562778 ATAATAATATTAAT--TAATTA
1 ATAATAATAATAATAATAATTA
*
562798 ATAATAATAATAATAATAAATA
1 ATAATAATAATAATAATAATTA
562820 ATAA
1 ATAA
562824 ACAATTAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
20 19 0.47
21 10 0.25
22 11 0.28
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
ATAATAATAATAATAATAATTA
Found at i:562830 original size:33 final size:33
Alignment explanation
Indices: 562764--562833 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
562754 TTTATAATAA
* **
562764 TAAT-ATAATAATTAATAATAATATTAATTAAT
1 TAATAATAATAATTAATAATAATAATAAACAAT
562796 TAATAATAATAA-TAATAATAAATAATAAACAAT
1 TAATAATAATAATTAATAAT-AATAATAAACAAT
562829 TAATA
1 TAATA
562834 CCCGGATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
32 11 0.33
33 22 0.67
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.37
Consensus pattern (33 bp):
TAATAATAATAATTAATAATAATAATAAACAAT
Found at i:572371 original size:11 final size:11
Alignment explanation
Indices: 572331--572381 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
572321 AAAAACCAAC
572331 AAATAAAAA-A
1 AAATAAAAATA
*
572341 AAGTAAAAACATA
1 AAAT-AAAA-ATA
*
572354 GAATAAAAATA
1 AAATAAAAATA
*
572365 AAATAAACATA
1 AAATAAAAATA
572376 AAATAA
1 AAATAA
572382 GGACTTAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
10 3 0.09
11 22 0.67
12 5 0.15
13 3 0.09
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:572961 original size:11 final size:11
Alignment explanation
Indices: 572945--572972 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
572935 TCATCACCGG
572945 TCGCCGGGCCC
1 TCGCCGGGCCC
572956 TCGCCGGGCCC
1 TCGCCGGGCCC
572967 TCGCCG
1 TCGCCG
572973 ACCCCTGCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.54, G:0.36, T:0.11
Consensus pattern (11 bp):
TCGCCGGGCCC
Found at i:574212 original size:135 final size:134
Alignment explanation
Indices: 573882--574242 Score: 433
Period size: 135 Copynumber: 2.7 Consensus size: 134
573872 CTAAGTTTGG
* * * *
573882 ACAAGTTCTTCTCATTATGAACTTCTTCTCACTCAT-T-GAATGTGTTCTTCTCATTATGACCTC
1 ACAAGCTCTTCTCATTATGAACTTCTTCTCCCTC-TGTCGAATGAGTTCTTCTCATTATGAACTC
** * * * ***
573945 TCCATCGGAAACT-TCAATCCATCAAGCGAGGTGTTGCTGATTCGAAGTGTTGTGAATCGAGCAA
65 TCCATTTGAAA-TGT-AATCC-TCAAGCAAGGTGTCGCTGATTCGAAATAACGTGAATCGAGCAA
*
574009 TAGGTTGA
127 TAGGTCGA
* *
574017 ACATGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCT
1 ACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGAATGAGTTCTTCTCATTATGAACTCT
* * * *
574082 CCATTTGAAATGATAATACCTTAAGCAATGTGTCGCTGATTCGAAATAACGTTAATCGAGCCATA
66 CCATTTGAAATG-TAAT-CCTCAAGCAAGGTGTCGCTGATTCGAAATAACGTGAATCGAGCAATA
574147 GGTCGA
129 GGTCGA
*
574153 ACAAGCT-TTCTCATTATGAACTTCTTCTCCCTCTGTCGAACGAGTTCTTCTCATTATGAACTCT
1 ACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGAATGAGTTCTTCTCATTATGAACTCT
*
574217 TCATTTGAAATGTTAATCCCTCAAGC
66 CCATTTGAAATG-TAAT-CCTCAAGC
574243 GAGGCGTAGT
Statistics
Matches: 195, Mismatches: 26, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
134 1 0.01
135 110 0.56
136 81 0.42
137 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.35
Consensus pattern (134 bp):
ACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGAATGAGTTCTTCTCATTATGAACTCT
CCATTTGAAATGTAATCCTCAAGCAAGGTGTCGCTGATTCGAAATAACGTGAATCGAGCAATAGG
TCGA
Found at i:574338 original size:39 final size:39
Alignment explanation
Indices: 574265--574518 Score: 327
Period size: 39 Copynumber: 6.5 Consensus size: 39
574255 GTTTTAAGAA
* *
574265 AAACAATCTCAAGTGAGAT-AAATCTTCAGTTTCGAGTG
1 AAACAATCTCAAGAGAGATAAAATCTTCTGTTTCGAGTG
* *
574303 AAA-ATATCTCAAGCGAGATAAAATCTTTTGTTTCGAGTG
1 AAACA-ATCTCAAGAGAGATAAAATCTTCTGTTTCGAGTG
* *
574342 AAACAATCTCAAGGGAGATAAAATCTTCTTTTTCGAGTG
1 AAACAATCTCAAGAGAGATAAAATCTTCTGTTTCGAGTG
*
574381 AAACAATCTCAAGAGAGATAAAATCTTATGTTTCGAGTG
1 AAACAATCTCAAGAGAGATAAAATCTTCTGTTTCGAGTG
* * *
574420 AAACTAT-TACAAGCGAGATAAAATCTTCTGTTTCAAGTG
1 AAACAATCT-CAAGAGAGATAAAATCTTCTGTTTCGAGTG
* * **
574459 AAA-ATATCTCAAGTGAGATGAAATCTTCTGTTTTAAGTG
1 AAACA-ATCTCAAGAGAGATAAAATCTTCTGTTTCGAGTG
574498 AAACAATCTCAAGAGAGATAA
1 AAACAATCTCAAGAGAGATAA
574519 TTCTTGTTTT
Statistics
Matches: 190, Mismatches: 19, Indels: 13
0.86 0.09 0.06
Matches are distributed among these distances:
37 1 0.01
38 17 0.09
39 169 0.89
40 3 0.02
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (39 bp):
AAACAATCTCAAGAGAGATAAAATCTTCTGTTTCGAGTG
Found at i:574470 original size:117 final size:117
Alignment explanation
Indices: 574254--574518 Score: 378
Period size: 117 Copynumber: 2.3 Consensus size: 117
574244 AGGCGTAGTT
** *
574254 TGTTTTAAGAAAAACAATCTCAAGTGAGAT-AAATCTTCAGTTTCGAGTGAAAATATCTCAAGCG
1 TGTTTTAAGTGAAACAATCTCAAGAGAGATAAAATCTTCAGTTTCGAGTGAAAATATCTCAAGCG
* *
574318 AGATAAAATCTTTTGTTTCGAGTGAAACAATCTCAAGGGAGATAAAATCTTC
66 AGATAAAATCTTCTGTTTCAAGTGAAACAATCTCAAGGGAGATAAAATCTTC
* *
574370 T-TTTTCGAGTGAAACAATCTCAAGAGAGATAAAATCTT-ATGTTTCGAGTGAAACTAT-TACAA
1 TGTTTT-AAGTGAAACAATCTCAAGAGAGATAAAATCTTCA-GTTTCGAGTGAAAATATCT-CAA
* *
574432 GCGAGATAAAATCTTCTGTTTCAAGTGAAA-ATATCTCAAGTGAGATGAAATCTTC
63 GCGAGATAAAATCTTCTGTTTCAAGTGAAACA-ATCTCAAGGGAGATAAAATCTTC
574487 TGTTTTAAGTGAAACAATCTCAAGAGAGATAA
1 TGTTTTAAGTGAAACAATCTCAAGAGAGATAA
574519 TTCTTGTTTT
Statistics
Matches: 133, Mismatches: 10, Indels: 11
0.86 0.06 0.07
Matches are distributed among these distances:
115 4 0.03
116 24 0.18
117 101 0.76
118 4 0.03
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (117 bp):
TGTTTTAAGTGAAACAATCTCAAGAGAGATAAAATCTTCAGTTTCGAGTGAAAATATCTCAAGCG
AGATAAAATCTTCTGTTTCAAGTGAAACAATCTCAAGGGAGATAAAATCTTC
Found at i:574538 original size:33 final size:33
Alignment explanation
Indices: 574498--574612 Score: 95
Period size: 33 Copynumber: 3.3 Consensus size: 33
574488 GTTTTAAGTG
574498 AAACAATCTCAAGAGAGATAATTCTTGTTTTAA
1 AAACAATCTCAAGAGAGATAATTCTTGTTTTAA
** * * *
574531 AAACAATCTTGAGTGAAATGAAATGTCTTCTTTCGAGTAA
1 AAACAATCTCAAGAGAGAT--AAT-TCTTGTTT----TAA
** *
574571 AAACTGTCTCAAGAGAGATAAATCTTGTTTTAA
1 AAACAATCTCAAGAGAGATAATTCTTGTTTTAA
574604 AAACAATCT
1 AAACAATCT
574613 TGAGTGAAAT
Statistics
Matches: 60, Mismatches: 15, Indels: 14
0.67 0.17 0.16
Matches are distributed among these distances:
33 25 0.42
35 3 0.05
36 7 0.12
37 7 0.12
38 2 0.03
40 16 0.27
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (33 bp):
AAACAATCTCAAGAGAGATAATTCTTGTTTTAA
Found at i:574573 original size:40 final size:39
Alignment explanation
Indices: 574528--574646 Score: 106
Period size: 40 Copynumber: 3.2 Consensus size: 39
574518 ATTCTTGTTT
*
574528 TAAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTCGAG
1 TAAAAACAATCTTGAGTGAAATGAAAT-TCTTATTTCGAG
** ** * * *
574568 TAAAAACTGTCTCAAGAGAGAT-AAA-TCTTGTTT----
1 TAAAAACAATCTTGAGTGAAATGAAATTCTTATTTCGAG
574601 TAAAAACAATCTTGAGTGAAATGAAATATCTTATTTCGAG
1 TAAAAACAATCTTGAGTGAAATGAAAT-TCTTATTTCGAG
574641 TAAAAA
1 TAAAAA
574647 TTGTCTCAAG
Statistics
Matches: 58, Mismatches: 14, Indels: 14
0.67 0.16 0.16
Matches are distributed among these distances:
33 16 0.28
34 3 0.05
36 7 0.12
37 7 0.12
39 3 0.05
40 22 0.38
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (39 bp):
TAAAAACAATCTTGAGTGAAATGAAATTCTTATTTCGAG
Found at i:574588 original size:73 final size:73
Alignment explanation
Indices: 574504--574677 Score: 294
Period size: 73 Copynumber: 2.4 Consensus size: 73
574494 AGTGAAACAA
* * *
574504 TCTCAAGAGAGATAATTCTTGTTTTAAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTCGAGT
1 TCTCAAGAGAGATAAATCTTGTTTTAAAAACAATCTTGAGTGAAATGAAATATCTTATTTCGAGT
574569 AAAAACTG
66 AAAAACTG
574577 TCTCAAGAGAGATAAATCTTGTTTTAAAAACAATCTTGAGTGAAATGAAATATCTTATTTCGAGT
1 TCTCAAGAGAGATAAATCTTGTTTTAAAAACAATCTTGAGTGAAATGAAATATCTTATTTCGAGT
*
574642 AAAAATTG
66 AAAAACTG
* *
574650 TCTCAAGAGAGACAAATCTGGTTTTAAA
1 TCTCAAGAGAGATAAATCTTGTTTTAAA
574678 GAAAAACAAT
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 95 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.33
Consensus pattern (73 bp):
TCTCAAGAGAGATAAATCTTGTTTTAAAAACAATCTTGAGTGAAATGAAATATCTTATTTCGAGT
AAAAACTG
Found at i:576892 original size:12 final size:12
Alignment explanation
Indices: 576875--576915 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
576865 AAAATATGGT
576875 ATGAACAATACC
1 ATGAACAATACC
576887 ATGAACAATA--
1 ATGAACAATACC
*
576897 ATGAACATTACC
1 ATGAACAATACC
*
576909 GTGAACA
1 ATGAACA
576916 GTGATGAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 9 0.36
12 16 0.64
ACGTcount: A:0.49, C:0.20, G:0.12, T:0.20
Consensus pattern (12 bp):
ATGAACAATACC
Found at i:576903 original size:22 final size:22
Alignment explanation
Indices: 576875--576935 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
576865 AAAATATGGT
*
576875 ATGAACAATACCATGAACAATA
1 ATGAACAATACCGTGAACAATA
* * *
576897 ATGAACATTACCGTGAACAGTG
1 ATGAACAATACCGTGAACAATA
*
576919 ATGAACAGTACCGTGAA
1 ATGAACAATACCGTGAA
576936 ATCAAATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.20
Consensus pattern (22 bp):
ATGAACAATACCGTGAACAATA
Found at i:576983 original size:21 final size:22
Alignment explanation
Indices: 576959--577005 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
576949 CAGATTGCAA
*
576959 ACAGGGAACTGATT-CTCTGCT
1 ACAGGGAACTGATTCCCCTGCT
*
576980 ACAGGGTACTGATTCCCCTGCT
1 ACAGGGAACTGATTCCCCTGCT
577002 ACAG
1 ACAG
577006 TACTTCCGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (22 bp):
ACAGGGAACTGATTCCCCTGCT
Found at i:577879 original size:30 final size:31
Alignment explanation
Indices: 577836--577906 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
577826 ACATAGTTTC
*
577836 TATCACGTAGACATATCA-TTTCCATACCTT
1 TATCACATAGACATATCATTTTCCATACCTT
* *
577866 TTTCACATAGACATATCATTTTTCATACCTT
1 TATCACATAGACATATCATTTTCCATACCTT
577897 TATCACATAG
1 TATCACATAG
577907 CTCATATAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 16 0.44
31 20 0.56
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.39
Consensus pattern (31 bp):
TATCACATAGACATATCATTTTCCATACCTT
Found at i:578006 original size:34 final size:29
Alignment explanation
Indices: 577928--577995 Score: 136
Period size: 29 Copynumber: 2.3 Consensus size: 29
577918 TTTCCTGCAT
577928 ATTCATGTCACATAATGCATATAATATGA
1 ATTCATGTCACATAATGCATATAATATGA
577957 ATTCATGTCACATAATGCATATAATATGA
1 ATTCATGTCACATAATGCATATAATATGA
577986 ATTCATGTCA
1 ATTCATGTCA
577996 TTTTTCATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (29 bp):
ATTCATGTCACATAATGCATATAATATGA
Found at i:581189 original size:14 final size:13
Alignment explanation
Indices: 581144--581178 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
581134 CACATGCAAA
581144 TGCAAAATGGGTG
1 TGCAAAATGGGTG
581157 TGCAAAATGGGTG
1 TGCAAAATGGGTG
581170 TGCAAAATG
1 TGCAAAATG
581179 CGAGATGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.34, C:0.09, G:0.34, T:0.23
Consensus pattern (13 bp):
TGCAAAATGGGTG
Found at i:585366 original size:22 final size:22
Alignment explanation
Indices: 585315--585371 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
585305 CCCTCATGGG
*
585315 GGAATCGGTTCCCCTTCAAAGGG
1 GGAATCGGTTCCCCTT-AAAGGA
585338 GGAATCGGTTCCCCTGT-AAGGA
1 GGAATCGGTTCCCCT-TAAAGGA
* *
585360 GGTATCGATTCC
1 GGAATCGGTTCC
585372 TACTACTAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.47
23 15 0.50
24 1 0.03
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (22 bp):
GGAATCGGTTCCCCTTAAAGGA
Found at i:589179 original size:21 final size:21
Alignment explanation
Indices: 589155--589196 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
589145 ATAAGACTAT
589155 TATCACTTTTT-AATTTTGAAA
1 TATCA-TTTTTGAATTTTGAAA
*
589176 TATCATTTTTGTATTTTGAAA
1 TATCATTTTTGAATTTTGAAA
589197 ATAAAGTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (21 bp):
TATCATTTTTGAATTTTGAAA
Found at i:591920 original size:14 final size:14
Alignment explanation
Indices: 591901--591929 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
591891 TTCGGGAGTC
591901 AGTTACGCGTGGGG
1 AGTTACGCGTGGGG
591915 AGTTACGCGTGGGG
1 AGTTACGCGTGGGG
591929 A
1 A
591930 AGGATTAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.14, G:0.48, T:0.21
Consensus pattern (14 bp):
AGTTACGCGTGGGG
Found at i:592985 original size:18 final size:19
Alignment explanation
Indices: 592960--593004 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
592950 ACCAACAAAT
* *
592960 AATAAAAA-ATATAAAAAA
1 AATAAAAACATAGAATAAA
592978 AAGTAAAAACATAGAATAAA
1 AA-TAAAAACATAGAATAAA
592998 AATAAAA
1 AATAAAA
593005 TAAACATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 11 0.48
20 10 0.43
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (19 bp):
AATAAAAACATAGAATAAA
Found at i:594629 original size:21 final size:20
Alignment explanation
Indices: 594605--594653 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
594595 CTCAAAATCA
* *
594605 TTTTTCAAAATTTCATTTTG
1 TTTTTCAAAATCTAATTTTG
594625 TTTTTCAAAATCTAATTTTG
1 TTTTTCAAAATCTAATTTTG
*
594645 -CTTTCAAAA
1 TTTTTCAAAA
594654 GAAAATCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.31, C:0.12, G:0.04, T:0.53
Consensus pattern (20 bp):
TTTTTCAAAATCTAATTTTG
Found at i:600353 original size:15 final size:15
Alignment explanation
Indices: 600333--600363 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
600323 GAAGCAAGCC
600333 AGTTAATTGAGATAT
1 AGTTAATTGAGATAT
600348 AGTTAATTGAGATAT
1 AGTTAATTGAGATAT
600363 A
1 A
600364 ACCCTAACGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (15 bp):
AGTTAATTGAGATAT
Found at i:601918 original size:33 final size:33
Alignment explanation
Indices: 601876--601941 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
601866 AAAACTACAA
601876 CTGACCAATCTCAAACAAAAATGTAACCAATTC
1 CTGACCAATCTCAAACAAAAATGTAACCAATTC
601909 CTGACCAATCTCAAACAAAAATGTAACCAATTC
1 CTGACCAATCTCAAACAAAAATGTAACCAATTC
601942 TAAGTTCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.45, C:0.27, G:0.06, T:0.21
Consensus pattern (33 bp):
CTGACCAATCTCAAACAAAAATGTAACCAATTC
Found at i:605716 original size:11 final size:11
Alignment explanation
Indices: 605702--605726 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
605692 AAAATTGAAT
605702 TGGGTTTTAAA
1 TGGGTTTTAAA
605713 TGGGTTTTAAA
1 TGGGTTTTAAA
605724 TGG
1 TGG
605727 ATTGGGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (11 bp):
TGGGTTTTAAA
Found at i:608208 original size:78 final size:78
Alignment explanation
Indices: 608077--608278 Score: 280
Period size: 78 Copynumber: 2.6 Consensus size: 78
608067 CCTGTACACC
* * * ** * *
608077 CAGTAAAGG-CTTACCCTGTGCACAAAGCAGAAGAGTTTGCGGTAAGGTCTTATCCTATGCACAA
1 CAGT-AAGGACTTACCCTGAGCACAAAGCTGAGGAGCCTGTGGTAAGGTATTATCCTATGCACAA
*
608141 AGCAGATGAGCCTG
65 AGCAGATGAGCCTA
* * *
608155 CAGTAAGGACTTACCCTGAGCACAAAGCTGAGGAACCTGTGGTAAGGTATTATCTTGTGCACAAA
1 CAGTAAGGACTTACCCTGAGCACAAAGCTGAGGAGCCTGTGGTAAGGTATTATCCTATGCACAAA
608220 GCAGATGAGCCTA
66 GCAGATGAGCCTA
*
608233 CAGTAAGGACTTACCCTAAGCACAAAGCTGAGGAGCCTGTGGTAAG
1 CAGTAAGGACTTACCCTGAGCACAAAGCTGAGGAGCCTGTGGTAAG
608279 CGGTAAGGTC
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
77 4 0.04
78 106 0.96
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (78 bp):
CAGTAAGGACTTACCCTGAGCACAAAGCTGAGGAGCCTGTGGTAAGGTATTATCCTATGCACAAA
GCAGATGAGCCTA
Found at i:608278 original size:39 final size:39
Alignment explanation
Indices: 608082--608278 Score: 182
Period size: 39 Copynumber: 5.1 Consensus size: 39
608072 ACACCCAGTA
* **
608082 AAGG-CTTACCCTGTGCACAAAGCAGAAGAGTTTGCGGT
1 AAGGACTTACCCTGTGCACAAAGCAGAGGAGCCTGCGGT
* * * * *
608120 AAGGTCTTATCCTATGCACAAAGCAGATGAGCCTGCAGT
1 AAGGACTTACCCTGTGCACAAAGCAGAGGAGCCTGCGGT
* * * *
608159 AAGGACTTACCCTGAGCACAAAGCTGAGGAACCTGTGGT
1 AAGGACTTACCCTGTGCACAAAGCAGAGGAGCCTGCGGT
* * * * *
608198 AAGGTA-TTATCTTGTGCACAAAGCAGATGAGCCTACAGT
1 AAGG-ACTTACCCTGTGCACAAAGCAGAGGAGCCTGCGGT
** * *
608237 AAGGACTTACCCTAAGCACAAAGCTGAGGAGCCTGTGGT
1 AAGGACTTACCCTGTGCACAAAGCAGAGGAGCCTGCGGT
608276 AAG
1 AAG
608279 CGGTAAGGTC
Statistics
Matches: 123, Mismatches: 33, Indels: 5
0.76 0.20 0.03
Matches are distributed among these distances:
38 5 0.04
39 117 0.95
40 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.21
Consensus pattern (39 bp):
AAGGACTTACCCTGTGCACAAAGCAGAGGAGCCTGCGGT
Found at i:609218 original size:13 final size:13
Alignment explanation
Indices: 609200--609224 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
609190 CGGGGGTTGG
609200 AAAAAATTCTAAA
1 AAAAAATTCTAAA
609213 AAAAAATTCTAA
1 AAAAAATTCTAA
609225 GTGTGTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAAAATTCTAAA
Found at i:610695 original size:3 final size:3
Alignment explanation
Indices: 610689--610740 Score: 68
Period size: 3 Copynumber: 17.3 Consensus size: 3
610679 ATTAAAAAAG
* * * *
610689 ATA ATA ATA TTA ATG ATA ATG ATT ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
610737 ATA A
1 ATA A
610741 ATTATTCATT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:610886 original size:16 final size:16
Alignment explanation
Indices: 610822--610901 Score: 72
Period size: 16 Copynumber: 5.0 Consensus size: 16
610812 AATTAAATTT
*
610822 GGGTTG-TTCTCGGTTT
1 GGGTTGCTT-TCGGTTC
* *
610838 GGGTTGCTTTCAGTCC
1 GGGTTGCTTTCGGTTC
* *
610854 GGGTTGATTTCGATTC
1 GGGTTGCTTTCGGTTC
610870 GGGTTGCTTTCGGTTC
1 GGGTTGCTTTCGGTTC
* * *
610886 GAGTTGTTTTTGGTTC
1 GGGTTGCTTTCGGTTC
610902 AATGAAAATT
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
16 49 0.96
17 2 0.04
ACGTcount: A:0.05, C:0.15, G:0.34, T:0.46
Consensus pattern (16 bp):
GGGTTGCTTTCGGTTC
Found at i:612841 original size:34 final size:34
Alignment explanation
Indices: 612798--612866 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
612788 GTTTGGTGTT
612798 TCTGATCGGAAATAAGATGCTAATTGAAGATTAA
1 TCTGATCGGAAATAAGATGCTAATTGAAGATTAA
612832 TCTGATCGGAAATAAGATGCTAATTGAAGATTAA
1 TCTGATCGGAAATAAGATGCTAATTGAAGATTAA
612866 T
1 T
612867 AAATACTCTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (34 bp):
TCTGATCGGAAATAAGATGCTAATTGAAGATTAA
Found at i:614986 original size:6 final size:6
Alignment explanation
Indices: 614975--615023 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
614965 AAAATGACTC
*
614975 ATTATA ATTAT- ATT-TA ATTATA AATATA A-T-TA ATTATA ATTATA
1 ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA
615019 ATTAT
1 ATTAT
615024 TATGTTTTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
4 4 0.11
5 8 0.21
6 26 0.68
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
ATTATA
Found at i:614996 original size:16 final size:16
Alignment explanation
Indices: 614975--615026 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
614965 AAAATGACTC
*
614975 ATTATAATTATATTTA
1 ATTATAATTATAATTA
*
614991 ATTATAAATATAATTA
1 ATTATAATTATAATTA
615007 ATTATAATTATAATT-
1 ATTATAATTATAATTA
615022 ATTAT
1 ATTAT
615027 GTTTTAGTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
15 5 0.15
16 28 0.85
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTATAATTATAATTA
Found at i:615003 original size:22 final size:22
Alignment explanation
Indices: 614977--615019 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
614967 AATGACTCAT
614977 TATAATTATATT-TAATTATAAA
1 TATAATTA-ATTATAATTATAAA
614999 TATAATTAATTATAATTATAA
1 TATAATTAATTATAATTATAA
615020 TTATTATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TATAATTAATTATAATTATAAA
Found at i:623743 original size:38 final size:37
Alignment explanation
Indices: 623701--623786 Score: 145
Period size: 38 Copynumber: 2.3 Consensus size: 37
623691 TTCTACTTTA
623701 AAACCCAAAACCTATTTTCCAGGATTCAACTCTTACTC
1 AAACCCAAAACCTATTTTCCAGGATTCAACTCTTAC-C
*
623739 AAACCCAAAGCCTATTTTCCAGGATTCAACTCTTACC
1 AAACCCAAAACCTATTTTCCAGGATTCAACTCTTACC
*
623776 CAACCCAAAAC
1 AAACCCAAAAC
623787 AGCATCTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
37 10 0.22
38 35 0.78
ACGTcount: A:0.36, C:0.34, G:0.06, T:0.24
Consensus pattern (37 bp):
AAACCCAAAACCTATTTTCCAGGATTCAACTCTTACC
Found at i:626336 original size:23 final size:23
Alignment explanation
Indices: 626310--626357 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
626300 ATAAAGTACA
*
626310 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
626333 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
626356 AT
1 AT
626358 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:626838 original size:39 final size:39
Alignment explanation
Indices: 626784--626870 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
626774 TCAAGTTGTA
*
626784 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
*
626823 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
626862 GATTTTGAT
1 GATTTTGAT
626871 GAGCATCGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
Found at i:627151 original size:18 final size:18
Alignment explanation
Indices: 627128--627164 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
627118 CGAAATATAT
627128 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
627146 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
627164 A
1 A
627165 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:627440 original size:25 final size:25
Alignment explanation
Indices: 627412--627462 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
627402 TTAATCCAAA
*
627412 TAATGTACCCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
627437 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
627462 T
1 T
627463 GATTTGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:627766 original size:23 final size:23
Alignment explanation
Indices: 627740--627802 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
627730 ATATAACCAC
*
627740 TACCTATTACATTATATAAATGA
1 TACCTATTACATTATATAAAGGA
* *
627763 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAAGGA
*
627786 TACCTATTACATCATAT
1 TACCTATTACATTATAT
627803 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (23 bp):
TACCTATTACATTATATAAAGGA
Found at i:628191 original size:23 final size:23
Alignment explanation
Indices: 628165--628227 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
628155 ATATAACCAC
628165 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
628188 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
628211 TACCTATTACATCATAT
1 TACCTATTACATTATAT
628228 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:631103 original size:181 final size:183
Alignment explanation
Indices: 630798--631137 Score: 551
Period size: 181 Copynumber: 1.9 Consensus size: 183
630788 TTCAAATTAC
* *
630798 CGACACTTTTTTAAATGGTATCGACACATTTTTATTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
* *
630863 ATTATAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTA
66 ATTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTA
*
630928 TATTACAAA-TTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGT
131 TATTACAAATTTACCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGT
* *
630980 CGACAC-TTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGGCATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
*
631044 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGTATA-TTATACCGGTT
66 ATT-AAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
* **
631108 ATATTGCAAATTTACCTATTTTATTATAAT
130 ATATTACAAATTTACCTATTACATTATAAT
631138 ATGTTGAAAG
Statistics
Matches: 145, Mismatches: 11, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
181 77 0.53
182 68 0.47
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.36
Consensus pattern (183 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
ATTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTA
TATTACAAATTTACCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGT
Found at i:632614 original size:3 final size:3
Alignment explanation
Indices: 632606--632692 Score: 84
Period size: 3 Copynumber: 29.0 Consensus size: 3
632596 ACTTGTTTGG
* * * **
632606 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GCC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * * *
632654 AGC TTC ATC GTC ATC ATC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
632693 GTCAGCTTCA
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.24, C:0.34, G:0.06, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:632629 original size:18 final size:18
Alignment explanation
Indices: 632606--632707 Score: 87
Period size: 18 Copynumber: 5.7 Consensus size: 18
632596 ACTTGTTTGG
632606 ATCATCATCTTCATCATC
1 ATCATCATCTTCATCATC
* *
632624 ATCATCATCATCGTCATC
1 ATCATCATCTTCATCATC
* ** * *
632642 ATCTTCATCGCCAGCTTC
1 ATCATCATCTTCATCATC
* *
632660 ATCGTCATCATCATCATC
1 ATCATCATCTTCATCATC
* *
632678 ATCGTCATCTTCATCGTC
1 ATCATCATCTTCATCATC
* *
632696 AGCTTCATCTTC
1 ATCATCATCTTC
632708 TGCGACCGCT
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.23, C:0.34, G:0.07, T:0.36
Consensus pattern (18 bp):
ATCATCATCTTCATCATC
Found at i:632673 original size:42 final size:42
Alignment explanation
Indices: 632614--632704 Score: 146
Period size: 42 Copynumber: 2.2 Consensus size: 42
632604 GGATCATCAT
*
632614 CTTCATCATCATCATCATCATCGTCATCATCTTCATCGCCAG
1 CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
* * *
632656 CTTCATCGTCATCATCATCATCATCGTCATCTTCATCGTCAG
1 CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
632698 CTTCATC
1 CTTCATC
632705 TTCTGCGACC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.22, C:0.35, G:0.08, T:0.35
Consensus pattern (42 bp):
CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
Found at i:639778 original size:10 final size:10
Alignment explanation
Indices: 639752--639817 Score: 66
Period size: 10 Copynumber: 6.8 Consensus size: 10
639742 GCTGGAAAAT
639752 CGGTTTG-AC
1 CGGTTTGAAC
*
639761 CAGTTTTGAAC
1 C-GGTTTGAAC
639772 CGGTTTG-AC
1 CGGTTTGAAC
*
639781 CGGTTCGAAC
1 CGGTTTGAAC
639791 CGGTTTG-AC
1 CGGTTTGAAC
*
639800 CGGTCTGAAC
1 CGGTTTGAAC
*
639810 CGGGTTGA
1 CGGTTTGA
639818 CCCGACCCGA
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
9 17 0.37
10 26 0.57
11 3 0.07
ACGTcount: A:0.17, C:0.23, G:0.32, T:0.29
Consensus pattern (10 bp):
CGGTTTGAAC
Found at i:639792 original size:19 final size:19
Alignment explanation
Indices: 639752--639819 Score: 84
Period size: 19 Copynumber: 3.5 Consensus size: 19
639742 GCTGGAAAAT
* *
639752 CGGTTTGACCAGTTTTGAAC
1 CGGTTTGACC-GGTTCGAAC
639772 CGGTTTGACCGGTTCGAAC
1 CGGTTTGACCGGTTCGAAC
639791 CGGTTTGACCGG-TCTGAAC
1 CGGTTTGACCGGTTC-GAAC
*
639810 CGGGTTGACC
1 CGGTTTGACC
639820 CGACCCGACT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
18 2 0.05
19 32 0.73
20 10 0.23
ACGTcount: A:0.16, C:0.25, G:0.31, T:0.28
Consensus pattern (19 bp):
CGGTTTGACCGGTTCGAAC
Found at i:639835 original size:17 final size:17
Alignment explanation
Indices: 639813--639870 Score: 107
Period size: 17 Copynumber: 3.4 Consensus size: 17
639803 TCTGAACCGG
*
639813 GTTGACCCGACCCGACT
1 GTTGACCCGACCCGACC
639830 GTTGACCCGACCCGACC
1 GTTGACCCGACCCGACC
639847 GTTGACCCGACCCGACC
1 GTTGACCCGACCCGACC
639864 GTTGACC
1 GTTGACC
639871 GTTGACCGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.17, C:0.43, G:0.24, T:0.16
Consensus pattern (17 bp):
GTTGACCCGACCCGACC
Found at i:639870 original size:7 final size:7
Alignment explanation
Indices: 639860--639890 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
639850 GACCCGACCC
639860 GACCGTT
1 GACCGTT
639867 GACCGTT
1 GACCGTT
639874 GACCGTT
1 GACCGTT
639881 GACCGTT
1 GACCGTT
639888 GAC
1 GAC
639891 TTTCTTTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.26
Consensus pattern (7 bp):
GACCGTT
Found at i:641531 original size:24 final size:24
Alignment explanation
Indices: 641521--641635 Score: 160
Period size: 24 Copynumber: 4.8 Consensus size: 24
641511 CATAATTCAC
* * * *
641521 GTCAAGTATCATATCAAAATCTAG
1 GTCAAGTATCAGATCAGAATCCAA
641545 GTCAAGTATCAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAA
*
641569 GTCAAGTATCAGATCAAAATCCAA
1 GTCAAGTATCAGATCAGAATCCAA
*
641593 GTC-AGCTATCAGATCAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAA
641617 GTCAAGTATCAGATCAGAA
1 GTCAAGTATCAGATCAGAA
641636 ATCAAATCGA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 2 0.02
24 78 0.95
25 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAA
Found at i:641652 original size:48 final size:48
Alignment explanation
Indices: 641497--641652 Score: 138
Period size: 48 Copynumber: 3.2 Consensus size: 48
641487 AAACGGATAT
* * * * * * * *
641497 ATCAAAAATCAAATCATAATTCACGTCAAGTATCATATCAAAATCTAG
1 ATCAGAAATCAGATCAGAATCCAAGTCAAGTATCAGATCAAAATCCAA
* *
641545 GTCA-AGTATCAGATCAGAATCCAAGTCAAGTATCAGATCAAAATCCAA
1 ATCAGA-AATCAGATCAGAATCCAAGTCAAGTATCAGATCAAAATCCAA
* ** *
641593 GTCAGCTATCAGATCAGAATCCATGTCAAGTATCAGATCAGAAAT-CAA
1 ATCAGAAATCAGATCAGAATCCAAGTCAAGTATCAGATCA-AAATCCAA
641641 ATC-GAAAATCAG
1 ATCAG-AAATCAG
641653 GTAAAATATT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
47 2 0.02
48 84 0.93
49 4 0.04
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.23
Consensus pattern (48 bp):
ATCAGAAATCAGATCAGAATCCAAGTCAAGTATCAGATCAAAATCCAA
Found at i:641652 original size:72 final size:71
Alignment explanation
Indices: 641501--641652 Score: 164
Period size: 72 Copynumber: 2.1 Consensus size: 71
641491 GGATATATCA
* * * * * *
641501 AAAATCAAATCATAATTCACGTCAAGTATCATATCAAAATCTAGGTCAAGTATCAGATCAGAATC
1 AAAATCAGATCAAAATCCAAGTCAAGTATCAGATCAAAATCCAGGTCAAGTATCAGATCAGAATC
*
641566 CAAGTC
66 CAAATC
* * *
641572 AAGTATCAGATCAAAATCCAAGTC-AGCTATCAGATCAGAATCCATGTCAAGTATCAGATCAGAA
1 AA-AATCAGATCAAAATCCAAGTCAAG-TATCAGATCAAAATCCAGGTCAAGTATCAGATCAG-A
641636 AT-CAAATC
63 ATCCAAATC
641644 GAAAATCAG
1 -AAAATCAG
641653 GTAAAATATT
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
71 4 0.06
72 57 0.86
73 5 0.08
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.23
Consensus pattern (71 bp):
AAAATCAGATCAAAATCCAAGTCAAGTATCAGATCAAAATCCAGGTCAAGTATCAGATCAGAATC
CAAATC
Found at i:644109 original size:17 final size:17
Alignment explanation
Indices: 644087--644127 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
644077 GGTCAATTGT
*
644087 GGTCAACGCCGGTCAAC
1 GGTCAACGCAGGTCAAC
*
644104 GGTCAACGCAGGTTAAC
1 GGTCAACGCAGGTCAAC
*
644121 AGTCAAC
1 GGTCAAC
644128 ATTTGACCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (17 bp):
GGTCAACGCAGGTCAAC
Found at i:646659 original size:65 final size:65
Alignment explanation
Indices: 646501--646659 Score: 191
Period size: 64 Copynumber: 2.5 Consensus size: 65
646491 GTTTAAGGTG
* * * **
646501 CATCGATGCACATGCAGTGCATCGATGCAT--GAATTTAAATAGAAAACATCGAATAGGATTTAT
1 CATCGATGCATAAGGAGTGCATCGATGCATCCCCA-TTAAATAGAAAACATCGAATAGGATTTAT
*
646564 G
65 A
*
646565 CATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATA-CAAACATCGAATAGGATTTATA
1 CATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTATA
*
646629 CATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 CATCGATGCATAAG-G-AGTGCATCGATGCAT
646660 ACCTTCATTA
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
63 1 0.01
64 59 0.71
65 22 0.27
66 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (65 bp):
CATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTATA
Found at i:647178 original size:18 final size:18
Alignment explanation
Indices: 647155--647189 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
647145 CTAGGAGATT
647155 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
647173 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
647190 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:648052 original size:147 final size:148
Alignment explanation
Indices: 647862--648174 Score: 533
Period size: 147 Copynumber: 2.1 Consensus size: 148
647852 GAGTCGAGGG
* **
647862 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
1 TCTACGCGGTCCTTCGGGA-ATATATATATTCTGTGGAACATGTGTGAAGTCTGGAAAGACACAT
647927 A-TATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
65 ACT-TGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
647991 ATATGGCACTACGGTGCAAT
129 ATATGGCACTACGGTGCAAT
*
648011 TCTACGCGGTCCTTCGGG-ATATATATATTCTGTGGAACATGTGTGAAGTCTTGAAAGACACATA
1 TCTACGCGGTCCTTCGGGAATATATATATTCTGTGGAACATGTGTGAAGTCTGGAAAGACACATA
*
648075 CTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATTATTAT
66 CTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTAT
648140 ATGGCACTACGGTGCAAT
131 ATGGCACTACGGTGCAAT
648158 TCTACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
648175 TGCAATTATA
Statistics
Matches: 157, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
146 1 0.01
147 137 0.87
148 1 0.01
149 18 0.11
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (148 bp):
TCTACGCGGTCCTTCGGGAATATATATATTCTGTGGAACATGTGTGAAGTCTGGAAAGACACATA
CTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTAT
ATGGCACTACGGTGCAAT
Found at i:648175 original size:23 final size:23
Alignment explanation
Indices: 648142--648186 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
648132 ATTATTATAT
*
648142 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
*
648165 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTATACG
648187 AGCTGTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:651641 original size:65 final size:65
Alignment explanation
Indices: 651483--651641 Score: 191
Period size: 64 Copynumber: 2.5 Consensus size: 65
651473 GTTTAAGGTG
* * * **
651483 CATCGATGCACATGCAGTGCATCGATGCAT--GAATTTAAATAGAAAACATCGAATAGGATTTAT
1 CATCGATGCATAAGGAGTGCATCGATGCATCCCCA-TTAAATAGAAAACATCGAATAGGATTTAT
*
651546 G
65 A
*
651547 CATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATA-CAAACATCGAATAGGATTTATA
1 CATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTATA
*
651611 CATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 CATCGATGCATAAG-G-AGTGCATCGATGCAT
651642 ACCTTCATTA
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
63 1 0.01
64 59 0.71
65 22 0.27
66 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (65 bp):
CATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTATA
Found at i:653015 original size:149 final size:149
Alignment explanation
Indices: 652844--653148 Score: 549
Period size: 149 Copynumber: 2.0 Consensus size: 149
652834 GAGTCGAGGG
* * **
652844 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
1 TCTACGCAGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTGGAAAGACACAT
652909 A-TATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATTATT
66 ACT-TGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATTATT
652973 ATATGGCACTACGGTGCAAT
130 ATATGGCACTACGGTGCAAT
*
652993 TCTACGCAGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGAAAGACACAT
1 TCTACGCAGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTGGAAAGACACAT
653058 ACTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATTATTA
653123 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
653142 TCTACGC
1 TCTACGC
653149 GGCACTTCGG
Statistics
Matches: 150, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
149 149 0.99
150 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (149 bp):
TCTACGCAGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTGGAAAGACACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATTATTA
TATGGCACTACGGTGCAAT
Found at i:653159 original size:23 final size:23
Alignment explanation
Indices: 653126--653170 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
653116 ATTATTATAT
*
653126 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
*
653149 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTATACG
653171 AGCTGTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:654450 original size:24 final size:24
Alignment explanation
Indices: 654423--654537 Score: 151
Period size: 24 Copynumber: 4.8 Consensus size: 24
654413 TATAATTCAC
* * * *
654423 GTCAAGTATCATATCAAAATCTAG
1 GTCAAGTATCAGATCAGAATCCAT
*
654447 GTCAAGTATCAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAT
654471 GTCAAGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAT
654495 GTC-AGATATCAGATCAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAT
* *
654519 GTCAAGTGTCATATCAGAA
1 GTCAAGTATCAGATCAGAA
654538 ATCAAATAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 2 0.02
24 78 0.95
25 2 0.02
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAT
Found at i:659187 original size:24 final size:24
Alignment explanation
Indices: 659160--659280 Score: 109
Period size: 24 Copynumber: 5.0 Consensus size: 24
659150 TATATCAAAA
* * *
659160 ATCAAATCATAATTCACGTCAAGT
1 ATCAAATCAAAATCCAAGTCAAGT
* *
659184 ATCATATCAAAATCCAGGTCAAGT
1 ATCAAATCAAAATCCAAGTCAAGT
*
659208 ATCAAATCAGAATCCAAGTCAAGT
1 ATCAAATCAAAATCCAAGTCAAGT
* * * *
659232 ATCAGATTAGAATCCATGTC-AGAT
1 ATCAAATCAAAATCCAAGTCAAG-T
* * *
659256 ATCAGATCAGAATCCATGTCAAGT
1 ATCAAATCAAAATCCAAGTCAAGT
659280 A
1 A
659281 CCAGAATTTA
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
23 2 0.02
24 80 0.95
25 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (24 bp):
ATCAAATCAAAATCCAAGTCAAGT
Found at i:659231 original size:48 final size:48
Alignment explanation
Indices: 659160--659285 Score: 146
Period size: 48 Copynumber: 2.6 Consensus size: 48
659150 TATATCAAAA
* * * *
659160 ATCAAATCATAATTCACGTCAAGTATCATATCAAAATCCAGGTCA-AGT
1 ATCAAATCAGAATCCAAGTCAAGTATCAGATCAAAATCCAGGTCAGA-T
* * *
659208 ATCAAATCAGAATCCAAGTCAAGTATCAGATTAGAATCCATGTCAGAT
1 ATCAAATCAGAATCCAAGTCAAGTATCAGATCAAAATCCAGGTCAGAT
* * *
659256 ATCAGATCAGAATCCATGTCAAGTACCAGA
1 ATCAAATCAGAATCCAAGTCAAGTATCAGA
659286 ATTTACGGAT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
48 66 0.99
49 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (48 bp):
ATCAAATCAGAATCCAAGTCAAGTATCAGATCAAAATCCAGGTCAGAT
Found at i:659285 original size:24 final size:24
Alignment explanation
Indices: 659177--659285 Score: 139
Period size: 24 Copynumber: 4.5 Consensus size: 24
659167 CATAATTCAC
* * *
659177 GTCAAGTATCATATCAAAATCCAG
1 GTCAAGTATCAGATCAGAATCCAT
* *
659201 GTCAAGTATCAAATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAT
*
659225 GTCAAGTATCAGATTAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAT
659249 GTC-AGATATCAGATCAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAT
*
659273 GTCAAGTACCAGA
1 GTCAAGTATCAGA
659286 ATTTACGGAT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
23 2 0.03
24 71 0.95
25 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAT
Found at i:663794 original size:15 final size:15
Alignment explanation
Indices: 663757--663797 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
663747 ATTCATCCTC
663757 TTTTCTTTTATTCTTA
1 TTTTCTTTT-TTCTTA
* *
663773 GTTTCTTTTTTGTTA
1 TTTTCTTTTTTCTTA
663788 TTTTCTTTTT
1 TTTTCTTTTT
663798 AATTTTGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.07, C:0.10, G:0.05, T:0.78
Consensus pattern (15 bp):
TTTTCTTTTTTCTTA
Found at i:667341 original size:18 final size:18
Alignment explanation
Indices: 667320--667357 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
667310 CCTTACACAC
667320 TTTGCCACAACAACACCA
1 TTTGCCACAACAACACCA
* *
667338 TTTGCCACGACAACGCCA
1 TTTGCCACAACAACACCA
667356 TT
1 TT
667358 CATACTTCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.37, G:0.11, T:0.21
Consensus pattern (18 bp):
TTTGCCACAACAACACCA
Found at i:673778 original size:18 final size:18
Alignment explanation
Indices: 673755--673790 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
673745 CCTTACACTC
673755 TGCCACAACAACACCATT
1 TGCCACAACAACACCATT
* *
673773 TGCCACGACAACGCCATT
1 TGCCACAACAACACCATT
673791 CATACTTCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.39, G:0.11, T:0.17
Consensus pattern (18 bp):
TGCCACAACAACACCATT
Found at i:678339 original size:54 final size:54
Alignment explanation
Indices: 678273--678376 Score: 181
Period size: 54 Copynumber: 1.9 Consensus size: 54
678263 AACTATCAAG
*
678273 ATCATTTGATTCGTTTATTTTTATTTCAACGATAAAAACAAGTATGATTGAATT
1 ATCATTTGATTCGTATATTTTTATTTCAACGATAAAAACAAGTATGATTGAATT
* *
678327 ATCATTTTATTCGTATATTTTTATTTCAACGATAAAAGCAAGTATGATTG
1 ATCATTTGATTCGTATATTTTTATTTCAACGATAAAAACAAGTATGATTG
678377 GGTATCATGA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.44
Consensus pattern (54 bp):
ATCATTTGATTCGTATATTTTTATTTCAACGATAAAAACAAGTATGATTGAATT
Found at i:678690 original size:31 final size:31
Alignment explanation
Indices: 678632--678691 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 31
678622 TCAAACCTTT
*
678632 AAAATTTTAAAATATTTAATTTGATCTTTAC
1 AAAATTTTAAAATATTTAATTTAATCTTTAC
678663 AAAATTTTTAAAAT-TTT-ATATTAATCTTT
1 AAAA-TTTTAAAATATTTAAT-TTAATCTTT
678692 CACTTTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 2 0.08
31 15 0.58
32 9 0.35
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.52
Consensus pattern (31 bp):
AAAATTTTAAAATATTTAATTTAATCTTTAC
Found at i:679736 original size:21 final size:21
Alignment explanation
Indices: 679710--679768 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
679700 ATTTACCGTG
*
679710 ATTGCGGCCGTCGCGGGCGCT
1 ATTGCGGCTGTCGCGGGCGCT
* * *
679731 ATTGCGGCTATCGCAGACGCT
1 ATTGCGGCTGTCGCGGGCGCT
679752 ATTGCGGCTGTCGCGGG
1 ATTGCGGCTGTCGCGGG
679769 TAACTCGGAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.10, C:0.29, G:0.39, T:0.22
Consensus pattern (21 bp):
ATTGCGGCTGTCGCGGGCGCT
Found at i:683701 original size:19 final size:21
Alignment explanation
Indices: 683658--683709 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
683648 GAAACCCCTT
*
683658 TGAAAATACATAACTTTTAAA
1 TGAAAATACATGACTTTTAAA
683679 TGAAAATACATGA-TTTT-AA
1 TGAAAATACATGACTTTTAAA
*
683698 TGAAGATACATG
1 TGAAAATACATG
683710 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.45
20 4 0.14
21 12 0.41
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.33
Consensus pattern (21 bp):
TGAAAATACATGACTTTTAAA
Found at i:684552 original size:17 final size:18
Alignment explanation
Indices: 684516--684552 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
684506 AACTATATAA
684516 TGCATATAATAAATGATG
1 TGCATATAATAAATGATG
*
684534 TGCATATTATAAA-GATG
1 TGCATATAATAAATGATG
684551 TG
1 TG
684553 AACTATAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.41, C:0.05, G:0.19, T:0.35
Consensus pattern (18 bp):
TGCATATAATAAATGATG
Found at i:687353 original size:19 final size:20
Alignment explanation
Indices: 687296--687345 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
687286 ATAATGAGTT
*
687296 TAAGAAATGAACAAT-AAT-A
1 TAAGTAATGAA-AATAAATAA
687315 TAAGTAATGAAAATAAATAA
1 TAAGTAATGAAAATAAATAA
687335 TAAG-AATGAAA
1 TAAGTAATGAAA
687346 TGAAATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 3 0.11
19 20 0.71
20 5 0.18
ACGTcount: A:0.64, C:0.02, G:0.12, T:0.22
Consensus pattern (20 bp):
TAAGTAATGAAAATAAATAA
Found at i:692580 original size:1 final size:1
Alignment explanation
Indices: 692576--692632 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
692566 TGAATTTCTC
* * * * * * *
692576 TTTTTCTTTTCTTTTCTTCTTTTCTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
692633 GCACTCCAAT
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (1 bp):
T
Found at i:692632 original size:13 final size:13
Alignment explanation
Indices: 692570--692629 Score: 72
Period size: 13 Copynumber: 4.8 Consensus size: 13
692560 TCTTTTTGAA
*
692570 TTTCTCTTTTTCT
1 TTTCTTTTTTTCT
*
692583 TTTCTTTTCTTCT
1 TTTCTTTTTTTCT
*
692596 TTTCTTTTCTTCT
1 TTTCTTTTTTTCT
692609 TTT-TTTTTTT-T
1 TTTCTTTTTTTCT
692620 TTT-TTTTTTT
1 TTTCTTTTTTT
692630 TTTGCACTCC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
11 11 0.25
12 6 0.14
13 27 0.61
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTCTTTTTTTCT
Found at i:692946 original size:20 final size:20
Alignment explanation
Indices: 692885--692934 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
692875 ATAATGGGTT
*
692885 TAAGAAATGAACAAT-AAT-A
1 TAAGTAATGAA-AATAAATAA
692904 TAAGTAATGAAAATAAATAA
1 TAAGTAATGAAAATAAATAA
692924 TAAG-AATGAAA
1 TAAGTAATGAAA
692935 TGAAATGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 3 0.11
19 20 0.71
20 5 0.18
ACGTcount: A:0.64, C:0.02, G:0.12, T:0.22
Consensus pattern (20 bp):
TAAGTAATGAAAATAAATAA
Found at i:702930 original size:9 final size:9
Alignment explanation
Indices: 702916--702963 Score: 51
Period size: 9 Copynumber: 5.0 Consensus size: 9
702906 GGCGGTTCAA
702916 ACCGGTTTT
1 ACCGGTTTT
702925 ACCGGTTTT
1 ACCGGTTTT
**
702934 CAACCGGTTCA
1 --ACCGGTTTT
702945 ACCCGGTTTT
1 A-CCGGTTTT
702955 ACCGGTTTT
1 ACCGGTTTT
702964 CATTGCCAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
9 18 0.56
10 7 0.22
11 7 0.22
ACGTcount: A:0.15, C:0.27, G:0.21, T:0.38
Consensus pattern (9 bp):
ACCGGTTTT
Found at i:702940 original size:20 final size:20
Alignment explanation
Indices: 702915--702963 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
702905 CGGCGGTTCA
702915 AACCGGTTTTA-CCGGTTTT
1 AACCGGTTTTACCCGGTTTT
**
702934 CAACCGGTTCAACCCGGTTTT
1 -AACCGGTTTTACCCGGTTTT
702955 -ACCGGTTTT
1 AACCGGTTTT
702964 CATTGCCAGC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 7 0.29
20 9 0.38
21 8 0.33
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.37
Consensus pattern (20 bp):
AACCGGTTTTACCCGGTTTT
Found at i:702943 original size:30 final size:30
Alignment explanation
Indices: 702908--702965 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
702898 AGTGAACCGG
702908 CGGTTCAAACCGGTTTTACCGGTTTTCAAC
1 CGGTTCAAACCGGTTTTACCGGTTTTCAAC
*
702938 CGGTTCAACCCGGTTTTACCGGTTTTCA
1 CGGTTCAAACCGGTTTTACCGGTTTTCA
702966 TTGCCAGCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.17, C:0.28, G:0.21, T:0.34
Consensus pattern (30 bp):
CGGTTCAAACCGGTTTTACCGGTTTTCAAC
Found at i:704073 original size:10 final size:10
Alignment explanation
Indices: 704057--704095 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
704047 ATTTTTTAAT
704057 GATTAAATTA
1 GATTAAATTA
* *
704067 TATTAAAGTA
1 GATTAAATTA
704077 GATTAAATTA
1 GATTAAATTA
704087 GATTAAATT
1 GATTAAATT
704096 GCAAGATAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:704109 original size:136 final size:136
Alignment explanation
Indices: 703958--711433 Score: 7900
Period size: 146 Copynumber: 53.9 Consensus size: 136
703948 TTTATTGAGT
* * *
703958 TTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAATATATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
704023 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTATATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
704088 ATTAAA
131 ATTAAA
704094 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
704159 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG------TT-G
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
704214 ATTAAA
131 ATTAAA
* * * *
704220 TTGTAAGATAGATAAAAATACATTGAAATTAAATAAATAAACATACTAATTTTTCGAAATATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
704285 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
*
704350 ATAAAA
131 ATTAAA
* * *
704356 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACCTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
704421 AATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT--A--A-
704486 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
704502 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
704567 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
704631 ATTAAAGTAGATTACA
131 A-T----T--A--A-A
*
704647 TTACAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
704712 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT-AA----
704777 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
*
704793 TCGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
704858 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG------TT-G
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
704913 ATTAAA
131 ATTAAA
*
704919 TTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
704984 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG------TT-G
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
705039 ATTAAA
131 ATTAAA
* * *
705045 TTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTCGAAATATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
705110 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
*
705175 ATAAAA
131 ATTAAA
* * *
705181 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAA-AAACCTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
705245 AATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT--A--A-
705310 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
* *
705326 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACTTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
705391 AATAC-ACAAAACATTAAAACAT-AA-TTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
66 AATACAAC-AAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
705453 GATTAAA
130 GATTAAA
705460 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
705525 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGTATTAAATTAGATTAGTAGA
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAG------ATTA-A--AGTAGA
705589 TTTAGATTATTAGATTAAA
122 -TTA-A--ATTAGATTAAA
*
705608 TTGCAAGATAGATAAAAATACATTGAAAGTAGATAAAT-AACATACTAA-TTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
705671 AATACAACAAACTTAAAAACATAAA-TTTTTAATGATTAAATTAGATT-AA--AG-------TAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
705725 ATTAAA
131 ATTAAA
705731 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
705796 AACACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAG-----A-TT-
705861 ATTAATGTAGATTAAA
124 A--AAT-TAGATTAAA
* *
705877 TTGCATGATAGATAAAAATACATTGAAATTAGATAAATAAAAATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
705942 AATACAACAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTATATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAG----------TAG
*
706007 ATTAAAGTAGATTAAA
121 ATTAAATTAGATTAAA
* * *
706023 TTGCAAGATAAATAAAAATACATTTAAATTAGATAAATAAAAATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
706088 AATACAACAAACATATAAACAT-AATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT-AA----
706152 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
*
706168 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACAAACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
706233 AATACAACAAACATAAAAACATAAATTTTTAATGATTAAATTAGATTAAATTAGATTAAATTAGA
66 AATACAACAAACATAAAAACATAAA--TTT--T--TT-AA-T-GATTAAATTAGATTAAAGTAGA
706298 TTAAATTAGATTAAA
122 TTAAATTAGATTAAA
* *
706313 TTGCATGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATGTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
706378 AATACAACAAGCATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT--A--A-
706442 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
706458 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
706523 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT-AA----
706588 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
706604 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
706669 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
706733 ATTAAAGTAGATTATA
131 A-T----T--A--A-A
*
706749 TTACAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
706814 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT-AA----
706879 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
*
706895 TCGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
706960 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG------TT-G
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
707015 ATTAAA
131 ATTAAA
*
707021 TTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
707086 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG------TT-G
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
707141 ATTAAA
131 ATTAAA
* * *
707147 TTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTCGAAATATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
707212 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
*
707277 ATAAAA
131 ATTAAA
* * *
707283 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACCTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
707348 AATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
707413 ATTAAAGTAGATTATA
131 A-T----T--A--A-A
* *
707429 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACTTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
707494 AATACAAAAAACATTAAAACAT-AATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
707558 ATTAAA
131 ATTAAA
707564 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
707629 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAGTAGATT--A--A-
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
707688 ATT--A
131 ATTAAA
707692 --GCAAGATAGATAAAAATACATTGAAA-TAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
707754 AATACAACAAACTTAAAAACATAAA-TTTTTAATGATTAAATTAGATT-AA--AG-------TAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
707808 ATTAAA
131 ATTAAA
*
707814 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATATTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
707879 AACACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAG-----A-TT-
707944 ATTAATGTAGATTAAA
124 A--AAT-TAGATTAAA
* *
707960 TTGCATGATAGATAAAAATACATTCAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
708025 AATACAACAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTATATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAG----------TAG
*
708090 ATTAAAGTAGATTAAA
121 ATTAAATTAGATTAAA
* *
708106 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAAAATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
708171 AATACAACAAACATATAAACATAAATTTTTTAATGATTAAATTAGATTAATGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAA---AG--T--A---G
*
708236 ATTAAAGTAGATTAAA
121 ATTAAATTAGATTAAA
*
708252 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACAAACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
708317 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAATTATATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
708381 ATTAAA
131 ATTAAA
* *
708387 TTGCATGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATGTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
708452 AATACAACAAGCATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT--A--A-
708516 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
708532 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
708597 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT-AA----
708662 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
708678 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
708743 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG-------TAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
708798 ATTAAA
131 ATTAAA
* * *
708804 TTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAATATATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* * *
708869 AATACAACAAACATAAAAACATAAAATTTTTAATGATTAAATTAGATTAAATTGCAAGA-TAGAT
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAA--G-TAGATTAAAT
* * * *
708933 AAAAATACA
128 TAGATTAAA
* * * * * **** **
708942 TTG-AA-ATTAGATAAATAA-ACATATTAATTTTTTGA-AACATAAAAATACAACAAACATAAAA
1 TTGCAAGA-TAGATAAA-AATACAT-TGAA--ATTAGATAA-ATAAACATACTA-ATTTTTTGAA
** ** ** * * * *** * * * *
709003 ACATAAATTTTTTAA-TGA-TTAAATTAGATTAAAGTAGATTAA--AGTAGATTAAATTGCAAGA
59 ACATAAA-AATACAACAAACATAAA-AACA-TAAA-TTTTTTAATGATTAAATTAGATT-AAAG-
* * *
709064 TAGATAAAAATACATTGAAA
118 TAGATTAAATTAGATT-AAA
* * * *** * * * *
709084 TTAG-ATAAATAAACAAACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATT
1 TT-GCA-AGATAGATAAA--AATACATTG-AA-AT-TAGATA-AATAAACAT----AC-TAATTT
* ** * * * ** * * * * ** * *
709148 TTTTAATGATTAAATTAGATTAAA-GT--AGA-TTAAATTTGATTAATG--TAGGTTAAATTGCA
53 TTTGAAACATAAAAATACAACAAACATAAAAACATAAATTT-TTTAATGATTAAATTAGATT-AA
* * *
709207 AGATAGATAAAAATACATTGAAA
116 AG-TAGATTAAATTAGATT-AAA
* * * * * ** * **
709230 TT---AGATAAATAAACATAC--T-AATATTTTGA-AACATAAAAATACAACAAATATAAAAACA
1 TTGCAAGATAGATAAAAATACATTGAA-A-TTAGATAA-ATAAACATACTA-ATTTTTTGAAACA
*** ** ** * * ** * *
709288 TCAATTTTTTAA-TGA-ATAAATTAGATTAAAGTAGATTAAATTAGATTAAAGTAGATTAAATTG
62 T-AAAAATACAACAAACATAAA-AACA-TAAA-T-TTTTTAA-T-GATTAAATTAGATTAAA--G
* * *
709351 CAAGATAAAAAATAATACATTGAAA
118 -TAGAT--TAAAT--TAGATT-AAA
* * * * *
709376 TT---AGATAAATAAACATACTATTTTTTTGAAATATAAAAATACAACAAACATAAAAACATAAA
1 TTGCAAGATAGATAAAAATAC-A-----TTGAAAT-T--AGATA-AATAAACAT----AC-TAAT
* ** * * * * * * *** *
709438 TTTTTTAATGATTAAATTAGATTA-AATTAGATTAAAGTAGATTAAA-TTGCAAGATAGATAAAA
51 TTTTTGAAACATAAAAATACA--ACAA--ACA-TAAA-AACA-TAAATTTTTTA-AT-GATTAAA
* * * *
709501 ATACATTGAAATTAGA-TAAA-TAAACTTATTAA
107 TTAGATT-AAAGTAGATTAAATTAGA-TTA--AA
**** * * * * * ** *
709533 TTTTTTGAAACATAAAAATACA---AAA-AACAT-AA-AAAC--A-TAATTTTTTTAATGATTAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* * * * * *** * * * *
709589 ATTAGATTA-AAGTAGATTAAATTAGATTAAA-TTGCAAGATAGATAAAAATACATTGAAATTAG
66 AATACA--ACAA--ACA-TAAA-AACA-TAAATTTTTTA-AT-GATTAAATTAGATT-AAAGTAG
* *
709652 A-TAAA-TAAACATACTAA
121 ATTAAATTAGA-TTA--AA
**** * * * * * ** *
709669 TTTTTTGAAACATAAAAATAC----AACTAACAT-AA-AAACATA--AA-TTTTT-AATGATTAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* * ** * * * **
709724 ATTAGATTAAA-GT--AGA-TTAAATTAGATTAA--ATT-A----GATTAAAGTAGATTAAATTA
66 AATACAACAAACATAAAAACATAAATT-TTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
709778 GATTAAA
130 GATTAAA
709785 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
709850 AATACAACTAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
709914 ATTAAA
131 ATTAAA
709920 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
709985 AATACAACAAACTTAAAAACATAAA-TTTTTAATGATTAAATTAGATT-AA--AG-------TAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
710039 ATTAAA
131 ATTAAA
* *
710045 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAAAATTCTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
710110 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT-AA----
710175 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
*
710191 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
710256 AATACAAAAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG-------TAG
710321 ATTAAATTAGATTAAA
121 ATTAAATTAGATTAAA
* *
710337 TTGCAAAATAGATAAAAATACATTGAAAATAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
710402 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATT-AA--AG-------TAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
710456 ATTAAA
131 ATTAAA
*
710462 TTGCAAGATAGATAAATATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
710527 AATACAACAAACATAAAAACATAAATTTTTGAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAG-----A-TT-
710592 ATTAATGTAGATTAAA
124 A--AAT-TAGATTAAA
*
710608 TTGCATGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
710673 AATACAACAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAGAGTATATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATT--A--A-ATT--AG---ATTAAAGTAG
*
710738 ATTAAAGTAGATTAAA
121 ATTAAATTAGATTAAA
* *
710754 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAAAATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
710819 AATACAACAAACATATAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT-AA----
710884 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
*
710900 TTGCAAGATTGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
710965 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT--A--A-
711030 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
* * *
711046 TTGCAAGATAAATAAAACTACATTGAAATTAGATAAATAAACATACTAATTTTTTTAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* * * *
711111 GATACAA-AAATCATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAATTAGATTAAAGTA
66 AATACAACAAA-CATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
711175 GATTAAA
130 GATTAAA
711182 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
711247 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG-------TAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
711302 ATTAAA
131 ATTAAA
*
711308 TTGCAAGATAGATAAAAATACATTGAAATTTGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
711373 AATACAACAAACATAAAAAAATAAA--TTTTAATGATTAAATTAGATTAAAGTAGATTAAATT
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATT
711434 GCAAGATAGA
Statistics
Matches: 6489, Mismatches: 390, Indels: 924
0.83 0.05 0.12
Matches are distributed among these distances:
116 17 0.00
117 7 0.00
118 9 0.00
119 4 0.00
120 9 0.00
121 2 0.00
122 11 0.00
123 48 0.01
124 61 0.01
125 381 0.06
126 942 0.15
127 25 0.00
128 6 0.00
129 17 0.00
130 12 0.00
131 16 0.00
132 11 0.00
133 6 0.00
134 99 0.02
135 554 0.09
136 672 0.10
137 31 0.00
138 24 0.00
139 11 0.00
140 41 0.01
141 53 0.01
142 36 0.01
143 18 0.00
144 60 0.01
145 810 0.12
146 2192 0.34
147 36 0.01
148 54 0.01
149 12 0.00
150 13 0.00
151 27 0.00
152 5 0.00
153 5 0.00
154 6 0.00
155 33 0.01
156 32 0.00
157 11 0.00
158 4 0.00
159 1 0.00
160 16 0.00
161 13 0.00
162 2 0.00
163 15 0.00
164 5 0.00
165 1 0.00
166 13 0.00
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.32
Consensus pattern (136 bp):
TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
ATTAAA
Found at i:704293 original size:126 final size:130
Alignment explanation
Indices: 703958--705308 Score: 813
Period size: 136 Copynumber: 10.0 Consensus size: 130
703948 TTTATTGAGT
* * *
703958 TTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAATATATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
704023 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTATATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAA-TAG-----ATTAG
704088 ATTAAA
125 ATTAAA
704094 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
704159 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA-AG-TT-GATTAAA
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAATAGATTAGATTAAA
* * * *
704220 TTGTAAGATAGATAAAAATACATTGAAATTAAATAAATAAACATACTAATTTTTCGAAATATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
704285 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAA-TAGA-T----TAG
*
704350 ATAAAA
125 ATTAAA
* * *
704356 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACCTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* * * *
704421 AATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAA-TAGATTAGATTAA
704486 A
130 A
* * * * * * *
704487 TT-AAAG-TAGATTAAATTGCA---AGA-TAGATAAA-AATACAT--TGAA--ATTAGATAA-AT
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAA-ACATACT-AATTTTTTGA-AACAT
* * *** ** **
704540 AAACATACTAATTTTTTGAAACATAAAAATACA-ACAAACATAAAAACA-TAAATTTTTAATGAT
63 AAAAATAC-AA------CAAACAT-AAAA-ACATA-AATTTTTTAATGATTAAA---TT-A-GAT
* * *
704603 TAAATTAGATTAAAGTAGA
113 TAAA-TAGATTAGATTAAA
* * * * * * * *
704622 TT--AA-ATTAGATTAAAGTAGATT-ACATTACAAGATAGATAAAAATAC--ATTGAAATTAGAT
1 TTGCAAGA-TAGATAAAAATACATTGAAATT---AGATAAATAAACATACTAATT---TTTTGA-
* * *** ** **
704681 AA-ATAAACATACTAATTTTTTGAAACATAAAAATACA-ACAAACATAAAAACA-TAAATTTTTT
58 AACATAAAAATAC-AA------CAAACAT-AAAA-ACATA-AATTTTTTAATGATTAAA----TT
* * *
704743 AATGATTAAATTAGATTAAAGTAGA
109 -A-GATTAAA-TAGATTAGATTAAA
* * * * * * * * *
704768 TT--AA-ATTTGATTAAAGTAGATT-AAATCGCAAGATAGATAAAAATAC--ATTGAAATTAGAT
1 TTGCAAGA-TAGATAAAAATACATTGAAAT---TAGATAAATAAACATACTAATT---TTTTGA-
* * *** ** **
704827 AA-ATAAACATACTAATTTTTTGAAACATAAAAATACA-ACAAACATAAAAACA-TAAATTTTTT
58 AACATAAAAATAC-AA------CAAACAT-AAAA-ACATA-AATTTTTTAATGATTAAA----TT
704889 AATGATTAAATTAGATTAAAGTTGATTAAA
109 -A-GATTAAA-TAGATT--A---GATTAAA
*
704919 TTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
704984 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA-AG-TT-GATTAAA
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAATAGATTAGATTAAA
* * *
705045 TTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTCGAAATATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
705110 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAA-TAGA-T----TAG
*
705175 ATAAAA
125 ATTAAA
* * *
705181 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAA-AAACCTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* * *
705245 AATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAA-TAGATTAGATTA
705309 GATTAAAGTA
Statistics
Matches: 1058, Mismatches: 85, Indels: 150
0.82 0.07 0.12
Matches are distributed among these distances:
122 13 0.01
123 5 0.00
124 4 0.00
125 11 0.01
126 236 0.22
127 6 0.01
129 20 0.02
130 17 0.02
131 18 0.02
132 2 0.00
133 6 0.01
134 4 0.00
135 117 0.11
136 272 0.26
137 3 0.00
138 3 0.00
140 1 0.00
141 18 0.02
142 11 0.01
143 6 0.01
145 63 0.06
146 162 0.15
148 1 0.00
149 4 0.00
150 13 0.01
151 20 0.02
153 17 0.02
154 5 0.00
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.32
Consensus pattern (130 bp):
TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAATAGATTAGATTAAA
Found at i:704334 original size:10 final size:10
Alignment explanation
Indices: 704319--704351 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
704309 ATTTTTTAAT
*
704319 GATTAAATTA
1 GATTAAAGTA
704329 GATTAAAGTA
1 GATTAAAGTA
704339 GATTAAAGTA
1 GATTAAAGTA
704349 GAT
1 GAT
704352 AAAATTGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (10 bp):
GATTAAAGTA
Found at i:704470 original size:10 final size:10
Alignment explanation
Indices: 704455--704503 Score: 80
Period size: 10 Copynumber: 4.9 Consensus size: 10
704445 TTTTTTTAAT
704455 GATTAAATTA
1 GATTAAATTA
*
704465 GATTAAAGTA
1 GATTAAATTA
704475 GATTAAATTA
1 GATTAAATTA
*
704485 GATTAAAGTA
1 GATTAAATTA
704495 GATTAAATT
1 GATTAAATT
704504 GCAAGATAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (10 bp):
GATTAAATTA
Found at i:704480 original size:20 final size:20
Alignment explanation
Indices: 704455--704503 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
704445 TTTTTTTAAT
704455 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
704475 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
704495 GATTAAATT
1 GATTAAATT
704504 GCAAGATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:704615 original size:10 final size:10
Alignment explanation
Indices: 704600--704649 Score: 73
Period size: 10 Copynumber: 5.0 Consensus size: 10
704590 AATTTTTAAT
704600 GATTAAATTA
1 GATTAAATTA
*
704610 GATTAAAGTA
1 GATTAAATTA
704620 GATTAAATTA
1 GATTAAATTA
*
704630 GATTAAAGTA
1 GATTAAATTA
*
704640 GATTACATTA
1 GATTAAATTA
704650 CAAGATAGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (10 bp):
GATTAAATTA
Found at i:704625 original size:20 final size:20
Alignment explanation
Indices: 704600--704649 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
704590 AATTTTTAAT
704600 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
704620 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
704640 GATTACATTA
1 GATTAAATTA
704650 CAAGATAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:704761 original size:10 final size:10
Alignment explanation
Indices: 704746--704793 Score: 69
Period size: 10 Copynumber: 4.8 Consensus size: 10
704736 ATTTTTTAAT
704746 GATTAAATTA
1 GATTAAATTA
*
704756 GATTAAAGTA
1 GATTAAATTA
*
704766 GATTAAATTT
1 GATTAAATTA
*
704776 GATTAAAGTA
1 GATTAAATTA
704786 GATTAAAT
1 GATTAAAT
704794 CGCAAGATAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:704771 original size:20 final size:20
Alignment explanation
Indices: 704746--704793 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
704736 ATTTTTTAAT
704746 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
704766 GATTAAATTTGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
704786 GATTAAAT
1 GATTAAAT
704794 CGCAAGATAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.38
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:705159 original size:10 final size:10
Alignment explanation
Indices: 705144--705176 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
705134 ATTTTTTAAT
*
705144 GATTAAATTA
1 GATTAAAGTA
705154 GATTAAAGTA
1 GATTAAAGTA
705164 GATTAAAGTA
1 GATTAAAGTA
705174 GAT
1 GAT
705177 AAAATTGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (10 bp):
GATTAAAGTA
Found at i:705294 original size:10 final size:10
Alignment explanation
Indices: 705279--705327 Score: 80
Period size: 10 Copynumber: 4.9 Consensus size: 10
705269 TTTTTTTAAT
705279 GATTAAATTA
1 GATTAAATTA
*
705289 GATTAAAGTA
1 GATTAAATTA
705299 GATTAAATTA
1 GATTAAATTA
*
705309 GATTAAAGTA
1 GATTAAATTA
705319 GATTAAATT
1 GATTAAATT
705328 GCAAGATAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (10 bp):
GATTAAATTA
Found at i:705304 original size:20 final size:20
Alignment explanation
Indices: 705279--705327 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
705269 TTTTTTTAAT
705279 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
705299 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
705319 GATTAAATT
1 GATTAAATT
705328 GCAAGATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:705438 original size:10 final size:10
Alignment explanation
Indices: 705423--705461 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
705413 AATTTTTAAT
705423 GATTAAATTA
1 GATTAAATTA
*
705433 GATTAAAGTA
1 GATTAAATTA
705443 GATTAAATTA
1 GATTAAATTA
705453 GATTAAATT
1 GATTAAATT
705462 GCAAGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:705728 original size:123 final size:126
Alignment explanation
Indices: 705599--705858 Score: 472
Period size: 123 Copynumber: 2.1 Consensus size: 126
705589 TTTAGATTAT
705599 TAGATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAAT-AACATACTAA-TTTTTG
1 TAGATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAATAAACATACTAATTTTTTG
* *
705662 AAACATAAAAATACAACAAACTTAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAG
66 AAACATAAAAACACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAG
*
705722 TAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTG
1 TAGATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAATAAACATACTAATTTTTTG
705787 AAACATAAAAACACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAG
66 AAACATAAAAACACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAG
705848 TAGATTAAATT
1 TAGATTAAATT
705859 TGATTAATGT
Statistics
Matches: 131, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
123 46 0.35
124 10 0.08
125 38 0.29
126 37 0.28
ACGTcount: A:0.53, C:0.07, G:0.08, T:0.31
Consensus pattern (126 bp):
TAGATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAATAAACATACTAATTTTTTG
AAACATAAAAACACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAG
Found at i:705743 original size:148 final size:148
Alignment explanation
Indices: 705038--705729 Score: 882
Period size: 135 Copynumber: 4.9 Consensus size: 148
705028 GATTAAAGTT
* * *
705038 GATTAAATTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTCGAA
1 GATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAATAAACATACTAATTTTTTGAA
*
705103 ATATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAG-ATTAAAGTAGAT
66 ACATAAAAATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGTATTAAAGTAGAT
705167 T-A-A-AG-TAG---A-T-
130 TAATAGAGATAGATTATTA
* * * *
705177 -A--AAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAA-AAACCTATTAATTTTTTGAA
1 GATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAATAAACATACTAATTTTTTGAA
* *
705238 ACATAAAAATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAG-ATTAAAGTAGAT
66 ACATAAAAATACAACAAACATAAAAACATAA-ATTTTTAATGATTAAATTAGTATTAAAGTAGAT
* *
705302 T-A-A-A-TTAGATTAAAGTA
130 TAATAGAGATAGATT--ATTA
* * *
705319 GATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACTTATTAATTTTTTGAA
1 GATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAATAAACATACTAATTTTTTGAA
*
705384 ACATAAAAATAC-ACAAAACATTAAAACAT-AATTTTTAATGATTAAATTAG-ATTAAAGTAG--
66 ACATAAAAATACAAC-AAACATAAAAACATAAATTTTTAATGATTAAATTAGTATTAAAGTAGAT
705444 --AT-----TA-A--ATTA
130 TAATAGAGATAGATTATTA
*
705453 GATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAA
1 GATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAATAAACATACTAATTTTTTGAA
*
705518 ACATAAAAATACAACAAACATAAAAACATAAATTTTTAATGATTAAATTAGTATTAAATTAGATT
66 ACATAAAAATACAACAAACATAAAAACATAAATTTTTAATGATTAAATTAGTATTAAAGTAGATT
* **
705583 AGTAGATTTAGATTATTA
131 AATAGAGATAGATTATTA
705601 GATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAAT-AACATACTAA-TTTTTGAA
1 GATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAATAAACATACTAATTTTTTGAA
*
705664 ACATAAAAATACAACAAACTTAAAAACATAAATTTTTAATGATTAAATTAG-ATTAAAGTAGATT
66 ACATAAAAATACAACAAACATAAAAACATAAATTTTTAATGATTAAATTAGTATTAAAGTAGATT
705728 AA
131 AA
705730 ATTGCAAGAT
Statistics
Matches: 500, Mismatches: 23, Indels: 54
0.87 0.04 0.09
Matches are distributed among these distances:
134 91 0.18
135 107 0.21
136 47 0.09
138 2 0.00
139 2 0.00
140 2 0.00
141 2 0.00
143 1 0.00
144 29 0.06
145 56 0.11
146 103 0.21
147 10 0.02
148 48 0.10
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.32
Consensus pattern (148 bp):
GATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAATAAACATACTAATTTTTTGAA
ACATAAAAATACAACAAACATAAAAACATAAATTTTTAATGATTAAATTAGTATTAAAGTAGATT
AATAGAGATAGATTATTA
Found at i:705815 original size:8 final size:8
Alignment explanation
Indices: 705787--705820 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
705777 TAATTTTTTG
705787 AAACATAA
1 AAACATAA
*
705795 AAACACAA
1 AAACATAA
705803 CAAACATAA
1 -AAACATAA
705812 AAACATAA
1 AAACATAA
705820 A
1 A
705821 TTTTTTAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.74, C:0.18, G:0.00, T:0.09
Consensus pattern (8 bp):
AAACATAA
Found at i:705845 original size:10 final size:10
Alignment explanation
Indices: 705830--705878 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
705820 ATTTTTTAAT
705830 GATTAAATTA
1 GATTAAATTA
*
705840 GATTAAAGTA
1 GATTAAATTA
*
705850 GATTAAATTT
1 GATTAAATTA
705860 GATT-AATGTA
1 GATTAAAT-TA
705870 GATTAAATT
1 GATTAAATT
705879 GCATGATAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 3 0.09
10 27 0.82
11 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:705855 original size:20 final size:20
Alignment explanation
Indices: 705830--705878 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
705820 ATTTTTTAAT
705830 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
* *
705850 GATTAAATTTGATTAATGTA
1 GATTAAATTAGATTAAAGTA
705870 GATTAAATT
1 GATTAAATT
705879 GCATGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:705991 original size:10 final size:10
Alignment explanation
Indices: 705976--706024 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
705966 TTTTTTTAAT
705976 GATTAAATTA
1 GATTAAATTA
*
705986 GATTAAAGTA
1 GATTAAATTA
*
705996 TATTAAATTA
1 GATTAAATTA
*
706006 GATTAAAGTA
1 GATTAAATTA
706016 GATTAAATT
1 GATTAAATT
706025 GCAAGATAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:706002 original size:20 final size:20
Alignment explanation
Indices: 705976--706024 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
705966 TTTTTTTAAT
705976 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
705996 TATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
706016 GATTAAATT
1 GATTAAATT
706025 GCAAGATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:706136 original size:10 final size:10
Alignment explanation
Indices: 706121--706169 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
706111 ATTTTTTAAT
706121 GATTAAATTA
1 GATTAAATTA
*
706131 GATTAAAGTA
1 GATTAAATTA
*
706141 GATTAAATTT
1 GATTAAATTA
*
706151 GATTAAAGTA
1 GATTAAATTA
706161 GATTAAATT
1 GATTAAATT
706170 GCAAGATAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:706146 original size:20 final size:20
Alignment explanation
Indices: 706121--706169 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
706111 ATTTTTTAAT
706121 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
706141 GATTAAATTTGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
706161 GATTAAATT
1 GATTAAATT
706170 GCAAGATAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:706280 original size:5 final size:5
Alignment explanation
Indices: 706266--706310 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
706256 AATTTTTAAT
* * * *
706266 GATTA AATTA GATTA AATTA GATTA AATTA GATTA AATTA GATTA
1 GATTA GATTA GATTA GATTA GATTA GATTA GATTA GATTA GATTA
706311 AATTGCATGA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (5 bp):
GATTA
Found at i:706281 original size:10 final size:10
Alignment explanation
Indices: 706266--706314 Score: 98
Period size: 10 Copynumber: 4.9 Consensus size: 10
706256 AATTTTTAAT
706266 GATTAAATTA
1 GATTAAATTA
706276 GATTAAATTA
1 GATTAAATTA
706286 GATTAAATTA
1 GATTAAATTA
706296 GATTAAATTA
1 GATTAAATTA
706306 GATTAAATT
1 GATTAAATT
706315 GCATGATAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:706426 original size:10 final size:10
Alignment explanation
Indices: 706411--706459 Score: 80
Period size: 10 Copynumber: 4.9 Consensus size: 10
706401 AATTTTTAAT
706411 GATTAAATTA
1 GATTAAATTA
*
706421 GATTAAAGTA
1 GATTAAATTA
706431 GATTAAATTA
1 GATTAAATTA
*
706441 GATTAAAGTA
1 GATTAAATTA
706451 GATTAAATT
1 GATTAAATT
706460 GCAAGATAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (10 bp):
GATTAAATTA
Found at i:706436 original size:20 final size:20
Alignment explanation
Indices: 706411--706459 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
706401 AATTTTTAAT
706411 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
706431 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
706451 GATTAAATT
1 GATTAAATT
706460 GCAAGATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:706572 original size:10 final size:10
Alignment explanation
Indices: 706557--706605 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
706547 ATTTTTTAAT
706557 GATTAAATTA
1 GATTAAATTA
*
706567 GATTAAAGTA
1 GATTAAATTA
*
706577 GATTAAATTT
1 GATTAAATTA
*
706587 GATTAAAGTA
1 GATTAAATTA
706597 GATTAAATT
1 GATTAAATT
706606 GCAAGATAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:706582 original size:20 final size:20
Alignment explanation
Indices: 706557--706605 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
706547 ATTTTTTAAT
706557 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
706577 GATTAAATTTGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
706597 GATTAAATT
1 GATTAAATT
706606 GCAAGATAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:706717 original size:10 final size:10
Alignment explanation
Indices: 706702--706751 Score: 73
Period size: 10 Copynumber: 5.0 Consensus size: 10
706692 AATTTTTAAT
706702 GATTAAATTA
1 GATTAAATTA
*
706712 GATTAAAGTA
1 GATTAAATTA
706722 GATTAAATTA
1 GATTAAATTA
*
706732 GATTAAAGTA
1 GATTAAATTA
*
706742 GATTATATTA
1 GATTAAATTA
706752 CAAGATAGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:706727 original size:20 final size:20
Alignment explanation
Indices: 706702--706751 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
706692 AATTTTTAAT
706702 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
706722 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
706742 GATTATATTA
1 GATTAAATTA
706752 CAAGATAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:706861 original size:126 final size:123
Alignment explanation
Indices: 706722--707941 Score: 503
Period size: 126 Copynumber: 9.2 Consensus size: 123
706712 GATTAAAGTA
* * *
706722 GATTAAATTAGATTAAAGTAGATTATATTACAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAAT
*
706787 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAAT
66 -AACATACTAA-TTTTTGAAACATAAAAACACAACAAACATAAAAACATAAA-TTTTTAAT
** * * * * * *
706848 GATTAAATTAGATTAAAGTAGATTAAATTTG-ATTAAAG-T-AGATTAAATCGCAAGATAGATAA
1 GATTAAATTAGATTAAAGTAGATTAAA-TTGCAAGATAGATAAAAATACATTGAAAG-TAGATAA
* * * * * * *
706910 AAATACAT--TGAA-ATTAGATAA-ATAAACATACTAATTTTTTGAAACATAAAAATACAACAAA
64 ATA-ACATACT-AATTTTTGA-AACATAAAAACAC-AA------CAAACAT-AAAA-AC-ATAAA
** ** *
706971 CATAAAAA
116 TTTTTAAT
* * *
706979 CA-TAAATTTTTTAATGATTAAATTAGATTAAAGTTGATTAAATTGTAAGATAGATAAAAATACA
1 GATTAAA----TT-A-GATT-AA--AG--TAGA-TT-A--AA-TTGCAAGATAGATAAAAATACA
* *
707043 TTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACAT
50 TTGAAAGTAGATAAAT-AACATACTAA-TTTTTGAAACATAAAAACACAACAAACATAAAAACAT
707108 AAATTTTTTAAT
113 AAA-TTTTTAAT
* * *
707120 GATTAAATTAGATTAAAGTTGATTAAATTGTAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAAT
* *
707185 AAACATACTAATTTTTCGAAATATAAAAATACAACAAACATAAAAACATAAATTTTTTAAT
66 -AACATACTAATTTTT-GAAACATAAAAACACAACAAACATAAAAACATAAA-TTTTTAAT
*
707246 GATTAAATTAGATTAAAGTAGATTAAAGTAGATAAAATTGCAAGATAAATAAAAATACATTGAAA
1 GATTAAATTAGATTAAAGTAG-----A-T---T-AAATTGCAAGATAGATAAAAATACATTGAAA
* * * * * *
707311 TTAGATAAATAAACCTATTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAATTTT
56 GTAGATAAAT-AACATACTAA-TTTTTGAAACATAAAAACACAACAAACATAAAAACATAA-ATT
707376 TTTAAT
118 TTTAAT
* * * * *
707382 GATTAAATTAGATTAAAGTAGATTAAATT---AGATTAAAGT-AGATTATATTGCAAGATAGATA
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGA-TAGA-TAAAAATACATTGAAAG-TAGATA
* * * *** * * *
707443 AAAATACAT--TGAA-ATTAGATAA-ATAAACTTATTAATTTTTTGAAACATAAAAATACAAAAA
63 AATA-ACATACT-AATTTTTGA-AACATAAAAACA-CAA------CAAACAT-AAAA-AC--ATA
***
707504 ACATTAAAACAT
114 A-ATTTTTA-AT
* ** * * * * * * * *
707516 AATT-TTTTAATGATTAAATTAGATTAAA--G-TAGATTAAATTAGATTAAATTGCAAGATAGAT
1 GATTAAATT-A-GATTAAAGTAGATTAAATTGCAAGA-TAGATAAAAATACATTGAAAG-TAGAT
* * * * * * *
707577 AAAAATACAT--TGAA-ATTAGATAA-ATAAACATACTAATTTTTTGAAACATAAAAATACAACA
62 AAATA-ACATACT-AATTTTTGA-AACATAAAAACAC-AA------CAAACAT-AAAA-AC-ATA
** ** *
707638 AACATAAAAA
114 AATTTTTAAT
*
707648 CA-TAAATTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAGCAAGATAGATAAAAATACA
1 GATTAAA---TT-A-GATT-AA--AG--T-----AGATTAAATT-GCAAGATAGATAAAAATACA
* *
707712 TTGAAA-TAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACTTAAAAACAT
50 TTGAAAGTAGATAAAT-AACATACTAA-TTTTTGAAACATAAAAACACAACAAACATAAAAACAT
707776 AAATTTTTAAT
113 AAATTTTTAAT
*
707787 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAAT
707852 AAACATACTAATATTTTGAAACATAAAAACACAACAAACATAAAAACATAAATTTTTTAAT
66 -AACATACTAAT-TTTTGAAACATAAAAACACAACAAACATAAAAACATAAA-TTTTTAAT
707913 GATTAAATTAGATTAAAGTAGATTAAATT
1 GATTAAATTAGATTAAAGTAGATTAAATT
707942 TGATTAATGT
Statistics
Matches: 874, Mismatches: 114, Indels: 212
0.73 0.09 0.18
Matches are distributed among these distances:
122 24 0.03
123 13 0.01
124 56 0.06
125 97 0.11
126 184 0.21
127 5 0.01
129 13 0.01
130 16 0.02
131 13 0.01
132 9 0.01
133 14 0.02
134 15 0.02
135 115 0.13
136 120 0.14
137 10 0.01
138 3 0.00
139 10 0.01
140 11 0.01
141 13 0.01
142 15 0.02
143 7 0.01
145 13 0.01
146 16 0.02
147 16 0.02
148 32 0.04
149 21 0.02
150 13 0.01
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.32
Consensus pattern (123 bp):
GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAAGTAGATAAAT
AACATACTAATTTTTGAAACATAAAAACACAACAAACATAAAAACATAAATTTTTAAT
Done.