Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003421.1 Hibiscus syriacus cultivar Beakdansim tig00007204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 882701
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
File 4 of 5
Found at i:706863 original size:10 final size:10
Alignment explanation
Indices: 706848--706895 Score: 69
Period size: 10 Copynumber: 4.8 Consensus size: 10
706838 ATTTTTTAAT
706848 GATTAAATTA
1 GATTAAATTA
*
706858 GATTAAAGTA
1 GATTAAATTA
*
706868 GATTAAATTT
1 GATTAAATTA
*
706878 GATTAAAGTA
1 GATTAAATTA
706888 GATTAAAT
1 GATTAAAT
706896 CGCAAGATAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:706873 original size:20 final size:20
Alignment explanation
Indices: 706848--706895 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
706838 ATTTTTTAAT
706848 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
706868 GATTAAATTTGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
706888 GATTAAAT
1 GATTAAAT
706896 CGCAAGATAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.38
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:707261 original size:10 final size:10
Alignment explanation
Indices: 707246--707278 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
707236 ATTTTTTAAT
*
707246 GATTAAATTA
1 GATTAAAGTA
707256 GATTAAAGTA
1 GATTAAAGTA
707266 GATTAAAGTA
1 GATTAAAGTA
707276 GAT
1 GAT
707279 AAAATTGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (10 bp):
GATTAAAGTA
Found at i:707397 original size:10 final size:10
Alignment explanation
Indices: 707382--707426 Score: 72
Period size: 10 Copynumber: 4.5 Consensus size: 10
707372 TTTTTTTAAT
*
707382 GATTAAATTA
1 GATTAAAGTA
707392 GATTAAAGTA
1 GATTAAAGTA
*
707402 GATTAAATTA
1 GATTAAAGTA
707412 GATTAAAGTA
1 GATTAAAGTA
707422 GATTA
1 GATTA
707427 TATTGCAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.36
Consensus pattern (10 bp):
GATTAAAGTA
Found at i:707407 original size:20 final size:20
Alignment explanation
Indices: 707382--707426 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
707372 TTTTTTTAAT
707382 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
707402 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
707422 GATTA
1 GATTA
707427 TATTGCAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.36
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:707536 original size:125 final size:125
Alignment explanation
Indices: 707402--707937 Score: 858
Period size: 125 Copynumber: 4.2 Consensus size: 125
707392 GATTAAAGTA
707402 GATTAAATTAGATTAAAGTAGATTATATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTATATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
* * * *
707467 AAACTTATTAATTTTTTGAAACATAAAAATACAAAAAACATTAAAACATAATTTTTTAAT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTAAT
707527 GATTAAATTAGATTAAAGTAGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAA
1 GATTAAATTAGATTAAAGTAG-----ATT--A-T--ATTGCAAGATAGATAAAAATACATTGAAA
*
707592 TTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTT
56 TTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTT
707657 TTAAT
121 TTAAT
*
707662 GATTAAATTAGATTAAAGTAGATTAAATTAGCAAGATAGATAAAAATACATTGAAA-TAGATAAA
1 GATTAAATTAGATTAAAGTAGATTATATT-GCAAGATAGATAAAAATACATTGAAATTAGATAAA
* *
707726 TAAACATACTAATTTTTTGAAACATAAAAATACAACAAACTTAAAAACATAAATTTTTAAT
65 TAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTAAT
*
707787 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTATATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
* *
707852 AAACATACTAATATTTTGAAACATAAAAACACAACAAACATAAAAACATAAATTTTTTAAT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACAT-AATTTTTTAAT
707913 GATTAAATTAGATTAAAGTAGATTA
1 GATTAAATTAGATTAAAGTAGATTA
707938 AATTTGATTA
Statistics
Matches: 387, Mismatches: 11, Indels: 25
0.91 0.03 0.06
Matches are distributed among these distances:
124 26 0.07
125 176 0.45
126 61 0.16
128 1 0.00
130 6 0.02
132 1 0.00
133 1 0.00
135 115 0.30
ACGTcount: A:0.54, C:0.07, G:0.08, T:0.32
Consensus pattern (125 bp):
GATTAAATTAGATTAAAGTAGATTATATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTAAT
Found at i:707542 original size:10 final size:10
Alignment explanation
Indices: 707527--707565 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
707517 ATTTTTTAAT
707527 GATTAAATTA
1 GATTAAATTA
*
707537 GATTAAAGTA
1 GATTAAATTA
707547 GATTAAATTA
1 GATTAAATTA
707557 GATTAAATT
1 GATTAAATT
707566 GCAAGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:707677 original size:10 final size:10
Alignment explanation
Indices: 707662--707692 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
707652 AATTTTTAAT
707662 GATTAAATTA
1 GATTAAATTA
*
707672 GATTAAAGTA
1 GATTAAATTA
707682 GATTAAATTA
1 GATTAAATTA
707692 G
1 G
707693 CAAGATAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.35
Consensus pattern (10 bp):
GATTAAATTA
Found at i:707898 original size:8 final size:8
Alignment explanation
Indices: 707870--707903 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
707860 TAATATTTTG
707870 AAACATAA
1 AAACATAA
*
707878 AAACACAA
1 AAACATAA
707886 CAAACATAA
1 -AAACATAA
707895 AAACATAA
1 AAACATAA
707903 A
1 A
707904 TTTTTTAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.74, C:0.18, G:0.00, T:0.09
Consensus pattern (8 bp):
AAACATAA
Found at i:707928 original size:10 final size:10
Alignment explanation
Indices: 707913--707961 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
707903 ATTTTTTAAT
707913 GATTAAATTA
1 GATTAAATTA
*
707923 GATTAAAGTA
1 GATTAAATTA
*
707933 GATTAAATTT
1 GATTAAATTA
707943 GATT-AATGTA
1 GATTAAAT-TA
707953 GATTAAATT
1 GATTAAATT
707962 GCATGATAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 3 0.09
10 27 0.82
11 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:707938 original size:20 final size:20
Alignment explanation
Indices: 707913--707961 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
707903 ATTTTTTAAT
707913 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
* *
707933 GATTAAATTTGATTAATGTA
1 GATTAAATTAGATTAAAGTA
707953 GATTAAATT
1 GATTAAATT
707962 GCATGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:708010 original size:21 final size:21
Alignment explanation
Indices: 707968--708010 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
707958 AATTGCATGA
*
707968 TAGATAAAAATACATTCAAAT
1 TAGATAAAAATACATACAAAT
*
707989 TAGATAAATAA-ACATACTAAT
1 TAGATAAA-AATACATACAAAT
708010 T
1 T
708011 TTTTGAAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.30
Consensus pattern (21 bp):
TAGATAAAAATACATACAAAT
Found at i:708074 original size:10 final size:10
Alignment explanation
Indices: 708059--708107 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
708049 TTTTTTTAAT
708059 GATTAAATTA
1 GATTAAATTA
*
708069 GATTAAAGTA
1 GATTAAATTA
*
708079 TATTAAATTA
1 GATTAAATTA
*
708089 GATTAAAGTA
1 GATTAAATTA
708099 GATTAAATT
1 GATTAAATT
708108 GCAAGATAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:708085 original size:20 final size:20
Alignment explanation
Indices: 708059--708107 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
708049 TTTTTTTAAT
708059 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
708079 TATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
708099 GATTAAATT
1 GATTAAATT
708108 GCAAGATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:708220 original size:10 final size:10
Alignment explanation
Indices: 708205--708253 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
708195 ATTTTTTAAT
708205 GATTAAATTA
1 GATTAAATTA
708215 GATT-AATGTA
1 GATTAAAT-TA
*
708225 GATTAAATTT
1 GATTAAATTA
*
708235 GATTAAAGTA
1 GATTAAATTA
708245 GATTAAATT
1 GATTAAATT
708254 GCAAGATAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 3 0.09
10 27 0.82
11 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:708230 original size:20 final size:20
Alignment explanation
Indices: 708205--708253 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
708195 ATTTTTTAAT
*
708205 GATTAAATTAGATTAATGTA
1 GATTAAATTAGATTAAAGTA
*
708225 GATTAAATTTGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
708245 GATTAAATT
1 GATTAAATT
708254 GCAAGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:708365 original size:10 final size:10
Alignment explanation
Indices: 708350--708388 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
708340 AATTTTTAAT
708350 GATTAAATTA
1 GATTAAATTA
708360 GATTAAATTA
1 GATTAAATTA
*
708370 TATTAAATTA
1 GATTAAATTA
708380 GATTAAATT
1 GATTAAATT
708389 GCATGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
GATTAAATTA
Found at i:708376 original size:20 final size:20
Alignment explanation
Indices: 708351--708388 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
708341 ATTTTTAATG
708351 ATTAAATTAGATTAAATTAT
1 ATTAAATTAGATTAAATTAT
708371 ATTAAATTAGATTAAATT
1 ATTAAATTAGATTAAATT
708389 GCATGATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
ATTAAATTAGATTAAATTAT
Found at i:708500 original size:10 final size:10
Alignment explanation
Indices: 708485--708533 Score: 80
Period size: 10 Copynumber: 4.9 Consensus size: 10
708475 AATTTTTAAT
708485 GATTAAATTA
1 GATTAAATTA
*
708495 GATTAAAGTA
1 GATTAAATTA
708505 GATTAAATTA
1 GATTAAATTA
*
708515 GATTAAAGTA
1 GATTAAATTA
708525 GATTAAATT
1 GATTAAATT
708534 GCAAGATAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (10 bp):
GATTAAATTA
Found at i:708510 original size:20 final size:20
Alignment explanation
Indices: 708485--708533 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
708475 AATTTTTAAT
708485 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
708505 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
708525 GATTAAATT
1 GATTAAATT
708534 GCAAGATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:708646 original size:10 final size:10
Alignment explanation
Indices: 708631--708679 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
708621 ATTTTTTAAT
708631 GATTAAATTA
1 GATTAAATTA
*
708641 GATTAAAGTA
1 GATTAAATTA
*
708651 GATTAAATTT
1 GATTAAATTA
*
708661 GATTAAAGTA
1 GATTAAATTA
708671 GATTAAATT
1 GATTAAATT
708680 GCAAGATAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:708656 original size:20 final size:20
Alignment explanation
Indices: 708631--708679 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
708621 ATTTTTTAAT
708631 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
708651 GATTAAATTTGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
708671 GATTAAATT
1 GATTAAATT
708680 GCAAGATAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:708784 original size:126 final size:131
Alignment explanation
Indices: 703958--705858 Score: 2322
Period size: 126 Copynumber: 14.0 Consensus size: 131
703948 TTTATTGAGT
* * *
703958 TTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAATATATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
704023 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTATATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATT-AA-TAGATT-AA--AGATTAAAGTAG
704088 ATTAAA
126 ATTAAA
704094 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
704159 AATACAACAAACATAAAAACATAAATTTTTTAATGATT-A-A-ATT--AGATTAAAGTTGATTAA
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAATAGATTAAAGATTAAAGTAGATTAA
704219 A
131 A
* * * *
704220 TTGTAAGATAGATAAAAATACATTGAAATTAAATAAATAAACATACTAATTTTTCGAAATATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
704285 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATT-AA-TAGATT-AA--AGATTAAAGTAG
*
704350 ATAAAA
126 ATTAAA
* * *
704356 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACCTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
704421 AATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATT-AA-TAGATT-AA--AGATT-AA--AG
704486 ATTAAAGTAGATTAAA
123 --T-A----GATTAAA
704502 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
704567 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATT-AA-TAGATT-AA--AGATT-AA--AG
*
704631 ATTAAAGTAGATTACA
123 --T-A----GATTAAA
*
704647 TTACAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
704712 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATT-AA-TAGATT-AA--AGATTAAA---G
*
704777 ATTAAAGTAGATTAAA
123 --T-AG----ATTAAA
*
704793 TCGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
704858 AATACAACAAACATAAAAACATAAATTTTTTAATGATT-A-A-ATT--AGATTAAAGTTGATTAA
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAATAGATTAAAGATTAAAGTAGATTAA
704918 A
131 A
*
704919 TTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
704984 AATACAACAAACATAAAAACATAAATTTTTTAATGATT-A-A-ATT--AGATTAAAGTTGATTAA
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAATAGATTAAAGATTAAAGTAGATTAA
705044 A
131 A
* * *
705045 TTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTCGAAATATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
705110 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATT-AA-TAGATT-AA--AGATTAAAGTAG
*
705175 ATAAAA
126 ATTAAA
* * *
705181 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAA-AAACCTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
705245 AATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATT-AA-TAGATT-AA--AGATT-AA--AG
705310 ATTAAAGTAGATTAAA
123 --T-A----GATTAAA
* *
705326 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACTTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
705391 AATAC-ACAAAACATTAAAACAT-AA-TTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
66 AATACAAC-AAACATAAAAACATAAATTTTTTAATGATT-AA-TAGATT-AA--AGATTAAAGTA
705453 GATTAAA
125 GATTAAA
705460 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
705525 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGTATTAAATTAGATTAGTAGA
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATT-AA-TAG-ATT-AA--AGA-T--TA-A
705589 TTTAGATTATTAGATTAAA
121 ---AG-----TAGATTAAA
*
705608 TTGCAAGATAGATAAAAATACATTGAAAGTAGATAAAT-AACATACTAA-TTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
705671 AATACAACAAACTTAAAAACATAAA-TTTTTAATGATT-A-A-ATT--AGATTAAAGTAGATTAA
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAATAGATTAAAGATTAAAGTAGATTAA
705730 A
131 A
705731 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
705796 AACACAACAAACATAAAAACATAAATTTTTTAATGATT-A-A-ATT--AGATTAAAGTAGATTAA
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAATAGATTAAAGATTAAAGTAGATTAA
705856 A
131 A
705857 TT
1 TT
705859 TGATTAATGT
Statistics
Matches: 1632, Mismatches: 65, Indels: 146
0.89 0.04 0.08
Matches are distributed among these distances:
123 46 0.03
124 10 0.01
125 38 0.02
126 383 0.23
128 4 0.00
130 2 0.00
131 11 0.01
132 3 0.00
133 1 0.00
134 90 0.06
135 105 0.06
136 301 0.18
137 3 0.00
138 3 0.00
139 5 0.00
140 5 0.00
141 6 0.00
142 3 0.00
143 4 0.00
144 34 0.02
145 189 0.12
146 330 0.20
147 10 0.01
148 46 0.03
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.32
Consensus pattern (131 bp):
TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
AATACAACAAACATAAAAACATAAATTTTTTAATGATTAATAGATTAAAGATTAAAGTAGATTAA
A
Found at i:708790 original size:116 final size:116
Alignment explanation
Indices: 708660--709035 Score: 617
Period size: 116 Copynumber: 3.2 Consensus size: 116
708650 AGATTAAATT
* *
708660 TGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACT
1 TGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATATT
708725 AATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAA
66 AATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAA
*
708776 TGATTAAATTAGATTAAAGTAGATTAAATTGCAAGATACATAAAAATACATTGAAATTAGATAAA
1 TGATT--A--A-A-T----TAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAA
* *
708841 TAAATATATTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAAATTTTTAA
56 TAAACATATTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAA
708902 TGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATATT
1 TGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATATT
708967 AATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAA
66 AATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAA
709018 TGATTAAATTAGATTAAA
1 TGATTAAATTAGATTAAA
709036 GTAGATTAAA
Statistics
Matches: 242, Mismatches: 8, Indels: 20
0.90 0.03 0.07
Matches are distributed among these distances:
116 127 0.52
118 1 0.00
120 2 0.01
121 2 0.01
122 1 0.00
124 1 0.00
126 108 0.45
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (116 bp):
TGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATATT
AATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAA
Found at i:708889 original size:126 final size:126
Alignment explanation
Indices: 707000--707941 Score: 1132
Period size: 126 Copynumber: 7.2 Consensus size: 126
706990 TAATGATTAA
* *
707000 ATTAGATTAAAGTTGATTAAATTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACAT
1 ATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACAT
707065 ACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAA
66 ACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAA
* *
707126 ATTAGATTAAAGTTGATTAAATTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACAT
1 ATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACAT
* *
707191 ACTAATTTTTCGAAATATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAA
66 ACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAA
*
707252 ATTAGATTAAAGTAGATTAAAGTAGATAAAATTGCAAGATAAATAAAAATACATTGAAATTAGAT
1 ATTAGATTAAAGTAG-----A-T---T-AAATTGCAAGATAGATAAAAATACATTGAAATTAGAT
* * * *
707317 AAATAAACCTATTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAATTTTTTTAAT
56 AAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAAT
707382 GATTAA
121 GATTAA
* * * *
707388 ATTAGATTAAAGTAGATTAAATT---AGATTAAAGT-AGATTATATTGCAAGA-TAGATAAA-AA
1 ATTAGATTAAAGTAGATTAAATTGCAAGA-TAGA-TAAAAATACATTG-AA-ATTAGATAAATAA
*** ** * * * *
707447 TACATTGAAATTAGATAAAT-AAACTTATTAATTTTTTGAA-ACATAAAAATACAAAAAACATTA
62 -ACATACTAATT---T-TTTGAAAC--A-TAA------AAATACA-ACAAACA-TAAAAACA-T-
707510 AAACATAATTTTTTAATGATTAA
109 ----A-AATTTTTTAATGATTAA
707533 ATTAGATTAAAGTAGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGAT
1 ATTAGATT-AA--AG-------TAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGAT
707598 AAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAA-TTTTTAAT
56 AAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAAT
707662 GATTAA
121 GATTAA
707668 ATTAGATTAAAGTAGATTAAATTAGCAAGATAGATAAAAATACATTGAAA-TAGATAAATAAACA
1 ATTAGATTAAAGTAGATTAAATT-GCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACA
*
707732 TACTAATTTTTTGAAACATAAAAATACAACAAACTTAAAAACATAAA-TTTTTAATGATTAA
65 TACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAA
707793 ATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACAT
1 ATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACAT
* *
707858 ACTAATATTTTGAAACATAAAAACACAACAAACATAAAAACATAAATTTTTTAATGATTAA
66 ACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAA
707919 ATTAGATTAAAGTAGATTAAATT
1 ATTAGATTAAAGTAGATTAAATT
707942 TGATTAATGT
Statistics
Matches: 717, Mismatches: 41, Indels: 116
0.82 0.05 0.13
Matches are distributed among these distances:
123 3 0.00
124 40 0.06
125 184 0.26
126 207 0.29
127 1 0.00
128 5 0.01
129 1 0.00
130 2 0.00
131 5 0.01
132 3 0.00
134 2 0.00
135 23 0.03
136 120 0.17
137 9 0.01
138 7 0.01
139 1 0.00
142 1 0.00
143 7 0.01
144 8 0.01
145 27 0.04
146 2 0.00
148 2 0.00
150 3 0.00
151 1 0.00
152 1 0.00
153 5 0.01
155 12 0.02
156 19 0.03
157 13 0.02
158 3 0.00
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.32
Consensus pattern (126 bp):
ATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACAT
ACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAA
Found at i:708924 original size:242 final size:247
Alignment explanation
Indices: 708660--709171 Score: 881
Period size: 252 Copynumber: 2.1 Consensus size: 247
708650 AGATTAAATT
*
708660 TGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACT
1 TGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACT
708725 AATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT-A-A-A-T-
66 AATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAATAGATTA
* * *
708785 TAGATTAAAGTAGATTAAATTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAATATAT
131 TAGATTAAAGTAGATTAAATTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAACAAAC
708850 TAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAAATTTTTAA
196 TAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAAATTTTTAA
*
708902 TGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATATT
1 TGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACT
708967 AATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGAT
66 AATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT-AA-TAGAT
*
709032 TAAAGTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAA
129 T--A-TAGATTAAAGTAGATTAAATTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAA
*
709097 CAAACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAA
191 CAAACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAAATTTTTAA
709154 TGATTAAATTAGATTAAA
1 TGATTAAATTAGATTAAA
709172 GTAGATTAAA
Statistics
Matches: 253, Mismatches: 7, Indels: 10
0.94 0.03 0.04
Matches are distributed among these distances:
242 119 0.47
244 1 0.00
246 1 0.00
247 1 0.00
248 1 0.00
252 130 0.51
ACGTcount: A:0.54, C:0.07, G:0.08, T:0.31
Consensus pattern (247 bp):
TGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACT
AATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAATAGATTA
TAGATTAAAGTAGATTAAATTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAACAAAC
TAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAAATTTTTAA
Found at i:708942 original size:126 final size:124
Alignment explanation
Indices: 707032--707398 Score: 475
Period size: 136 Copynumber: 2.8 Consensus size: 124
707022 TGTAAGATAG
707032 ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAA
1 ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAA
** * * *
707097 CATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAA-GTTGATTAAATTGTAAGATA
66 CATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAATGAAGAGTAGA-T-TAAAATA
* *
707157 GATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTCGAAATATAAAAATACAACAA
1 -ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAA
*
707222 ACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAGATAAAATTGC
65 ACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAA-T-G----AAG-AG-T-AGATT--
*
707287 AAGATAA
119 AAAAT-A
* * *
707294 ATAAAAATACATTGAAATTAGATAAATAAACCTATTAATTTTTTGAAACATAAAAATACAAAAAA
1 ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAA
*
707359 CATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAA
66 CATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAA
707399 GTAGATTAAA
Statistics
Matches: 217, Mismatches: 11, Indels: 16
0.89 0.05 0.07
Matches are distributed among these distances:
126 103 0.47
129 1 0.00
133 1 0.00
134 2 0.01
135 2 0.01
136 107 0.49
137 1 0.00
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (124 bp):
ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAA
CATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAATGAAGAGTAGATTAAAATA
Found at i:709034 original size:10 final size:10
Alignment explanation
Indices: 709019--709055 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
709009 ATTTTTTAAT
*
709019 GATTAAATTA
1 GATTAAAGTA
709029 GATTAAAGTA
1 GATTAAAGTA
709039 GATTAAAGTA
1 GATTAAAGTA
709049 GATTAAA
1 GATTAAA
709056 TTGCAAGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.16, T:0.32
Consensus pattern (10 bp):
GATTAAAGTA
Found at i:709170 original size:10 final size:10
Alignment explanation
Indices: 709155--709203 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
709145 ATTTTTTAAT
709155 GATTAAATTA
1 GATTAAATTA
*
709165 GATTAAAGTA
1 GATTAAATTA
*
709175 GATTAAATTT
1 GATTAAATTA
709185 GATT-AATGTA
1 GATTAAAT-TA
*
709195 GGTTAAATT
1 GATTAAATT
709204 GCAAGATAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
9 3 0.09
10 26 0.81
11 3 0.09
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:709180 original size:20 final size:20
Alignment explanation
Indices: 709155--709203 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
709145 ATTTTTTAAT
709155 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
* *
709175 GATTAAATTTGATTAATGTA
1 GATTAAATTAGATTAAAGTA
*
709195 GGTTAAATT
1 GATTAAATT
709204 GCAAGATAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.41
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:709322 original size:10 final size:10
Alignment explanation
Indices: 709304--709347 Score: 70
Period size: 10 Copynumber: 4.4 Consensus size: 10
709294 TTTTAATGAA
*
709304 TAAATTAGAT
1 TAAAGTAGAT
709314 TAAAGTAGAT
1 TAAAGTAGAT
*
709324 TAAATTAGAT
1 TAAAGTAGAT
709334 TAAAGTAGAT
1 TAAAGTAGAT
709344 TAAA
1 TAAA
709348 TTGCAAGATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (10 bp):
TAAAGTAGAT
Found at i:709329 original size:20 final size:20
Alignment explanation
Indices: 709304--709349 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
709294 TTTTAATGAA
709304 TAAATTAGATTAAAGTAGAT
1 TAAATTAGATTAAAGTAGAT
709324 TAAATTAGATTAAAGTAGAT
1 TAAATTAGATTAAAGTAGAT
709344 TAAATT
1 TAAATT
709350 GCAAGATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (20 bp):
TAAATTAGATTAAAGTAGAT
Found at i:709462 original size:10 final size:10
Alignment explanation
Indices: 709447--709485 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
709437 ATTTTTTAAT
709447 GATTAAATTA
1 GATTAAATTA
709457 GATTAAATTA
1 GATTAAATTA
*
709467 GATTAAAGTA
1 GATTAAATTA
709477 GATTAAATT
1 GATTAAATT
709486 GCAAGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:709552 original size:49 final size:47
Alignment explanation
Indices: 709495--709690 Score: 122
Period size: 49 Copynumber: 4.2 Consensus size: 47
709485 TGCAAGATAG
709495 ATAAAAATACATTGAAATTAGATAAATAAACTTATTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACTTA-TAATTTTTTGAAAC
* * * **
709544 ATAAAAATACA--AAA-AACAT-AA-AAAC--ATAATTTTTTTAATG
1 ATAAAAATACATTAAATTAGATAAATAAACTTATAATTTTTTGAAAC
* * * * * **** * *
709584 ATTAAATTAGATTAAAGTAGATTAAATTAGA-TTA-AATTGCAAGATAG
1 ATAAAAATACATTAAATTAGA-TAAA-TAAACTTATAATTTTTTGAAAC
*
709631 ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACTTA-TAATTTTTTGAAAC
709680 ATAAAAATACA
1 ATAAAAATACA
709691 ACTAACATAA
Statistics
Matches: 104, Mismatches: 30, Indels: 26
0.65 0.19 0.16
Matches are distributed among these distances:
40 19 0.18
41 1 0.01
42 3 0.03
43 6 0.06
44 3 0.03
45 5 0.05
46 6 0.06
47 24 0.23
48 8 0.08
49 29 0.28
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.33
Consensus pattern (47 bp):
ATAAAAATACATTAAATTAGATAAATAAACTTATAATTTTTTGAAAC
Found at i:709598 original size:10 final size:10
Alignment explanation
Indices: 709583--709621 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
709573 TTTTTTTAAT
709583 GATTAAATTA
1 GATTAAATTA
*
709593 GATTAAAGTA
1 GATTAAATTA
709603 GATTAAATTA
1 GATTAAATTA
709613 GATTAAATT
1 GATTAAATT
709622 GCAAGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:709733 original size:10 final size:10
Alignment explanation
Indices: 709718--709786 Score: 120
Period size: 10 Copynumber: 6.9 Consensus size: 10
709708 AATTTTTAAT
709718 GATTAAATTA
1 GATTAAATTA
*
709728 GATTAAAGTA
1 GATTAAATTA
709738 GATTAAATTA
1 GATTAAATTA
709748 GATTAAATTA
1 GATTAAATTA
*
709758 GATTAAAGTA
1 GATTAAATTA
709768 GATTAAATTA
1 GATTAAATTA
709778 GATTAAATT
1 GATTAAATT
709787 GCAAGATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 55 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:709752 original size:30 final size:30
Alignment explanation
Indices: 709718--709786 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
709708 AATTTTTAAT
709718 GATTAAATTAGATTAAAGTAGATTAAATTA
1 GATTAAATTAGATTAAAGTAGATTAAATTA
709748 GATTAAATTAGATTAAAGTAGATTAAATTA
1 GATTAAATTAGATTAAAGTAGATTAAATTA
709778 GATTAAATT
1 GATTAAATT
709787 GCAAGATAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (30 bp):
GATTAAATTAGATTAAAGTAGATTAAATTA
Found at i:709766 original size:165 final size:165
Alignment explanation
Indices: 709583--709921 Score: 678
Period size: 165 Copynumber: 2.1 Consensus size: 165
709573 TTTTTTTAAT
709583 GATTAAATTAGATTAAAGTAGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAA
1 GATTAAATTAGATTAAAGTAGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAA
709648 TTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACTAACATAAAAACATAAATTT
66 TTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACTAACATAAAAACATAAATTT
709713 TTAATGATTAAATTAGATTAAAGTAGATTAAATTA
131 TTAATGATTAAATTAGATTAAAGTAGATTAAATTA
709748 GATTAAATTAGATTAAAGTAGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAA
1 GATTAAATTAGATTAAAGTAGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAA
709813 TTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACTAACATAAAAACATAAATTT
66 TTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACTAACATAAAAACATAAATTT
709878 TTAATGATTAAATTAGATTAAAGTAGATTAAATTA
131 TTAATGATTAAATTAGATTAAAGTAGATTAAATTA
709913 GATTAAATT
1 GATTAAATT
709922 GCAAGATAGA
Statistics
Matches: 174, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
165 174 1.00
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (165 bp):
GATTAAATTAGATTAAAGTAGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAA
TTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACTAACATAAAAACATAAATTT
TTAATGATTAAATTAGATTAAAGTAGATTAAATTA
Found at i:709898 original size:10 final size:10
Alignment explanation
Indices: 709883--709921 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
709873 AATTTTTAAT
709883 GATTAAATTA
1 GATTAAATTA
*
709893 GATTAAAGTA
1 GATTAAATTA
709903 GATTAAATTA
1 GATTAAATTA
709913 GATTAAATT
1 GATTAAATT
709922 GCAAGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:710159 original size:10 final size:10
Alignment explanation
Indices: 710144--710192 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
710134 ATTTTTTAAT
710144 GATTAAATTA
1 GATTAAATTA
*
710154 GATTAAAGTA
1 GATTAAATTA
*
710164 GATTAAATTT
1 GATTAAATTA
*
710174 GATTAAAGTA
1 GATTAAATTA
710184 GATTAAATT
1 GATTAAATT
710193 GCAAGATAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:710169 original size:20 final size:20
Alignment explanation
Indices: 710144--710192 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
710134 ATTTTTTAAT
710144 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
710164 GATTAAATTTGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
710184 GATTAAATT
1 GATTAAATT
710193 GCAAGATAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:710305 original size:10 final size:10
Alignment explanation
Indices: 710290--710338 Score: 89
Period size: 10 Copynumber: 4.9 Consensus size: 10
710280 ATTTTTTAAT
710290 GATTAAATTA
1 GATTAAATTA
*
710300 GATTAAAGTA
1 GATTAAATTA
710310 GATTAAATTA
1 GATTAAATTA
710320 GATTAAATTA
1 GATTAAATTA
710330 GATTAAATT
1 GATTAAATT
710339 GCAAAATAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:710512 original size:21 final size:21
Alignment explanation
Indices: 710470--710512 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
710460 AATTGCAAGA
* **
710470 TAGATAAATATACATTGAAAT
1 TAGATAAATAAACATACAAAT
*
710491 TAGATAAATAAACATACTAAT
1 TAGATAAATAAACATACAAAT
710512 T
1 T
710513 TTTTGAAACA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (21 bp):
TAGATAAATAAACATACAAAT
Found at i:710576 original size:10 final size:10
Alignment explanation
Indices: 710561--710609 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
710551 ATTTTTGAAT
710561 GATTAAATTA
1 GATTAAATTA
*
710571 GATTAAAGTA
1 GATTAAATTA
*
710581 GATTAAATTT
1 GATTAAATTA
710591 GATT-AATGTA
1 GATTAAAT-TA
710601 GATTAAATT
1 GATTAAATT
710610 GCATGATAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 3 0.09
10 27 0.82
11 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:710586 original size:20 final size:20
Alignment explanation
Indices: 710561--710609 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
710551 ATTTTTGAAT
710561 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
* *
710581 GATTAAATTTGATTAATGTA
1 GATTAAATTAGATTAAAGTA
710601 GATTAAATT
1 GATTAAATT
710610 GCATGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:710733 original size:20 final size:20
Alignment explanation
Indices: 710707--710755 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
710697 TTTTTTTAAT
*
710707 GATTAAATTAGATTAGAGTA
1 GATTAAATTAGATTAAAGTA
*
710727 TATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
710747 GATTAAATT
1 GATTAAATT
710756 GCAAGATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:710741 original size:10 final size:10
Alignment explanation
Indices: 710707--710755 Score: 62
Period size: 10 Copynumber: 4.9 Consensus size: 10
710697 TTTTTTTAAT
710707 GATTAAATTA
1 GATTAAATTA
* *
710717 GATTAGAGTA
1 GATTAAATTA
*
710727 TATTAAATTA
1 GATTAAATTA
*
710737 GATTAAAGTA
1 GATTAAATTA
710747 GATTAAATT
1 GATTAAATT
710756 GCAAGATAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:710868 original size:10 final size:10
Alignment explanation
Indices: 710853--710901 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
710843 ATTTTTTAAT
710853 GATTAAATTA
1 GATTAAATTA
*
710863 GATTAAAGTA
1 GATTAAATTA
*
710873 GATTAAATTT
1 GATTAAATTA
*
710883 GATTAAAGTA
1 GATTAAATTA
710893 GATTAAATT
1 GATTAAATT
710902 GCAAGATTGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:710878 original size:20 final size:20
Alignment explanation
Indices: 710853--710901 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
710843 ATTTTTTAAT
710853 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
710873 GATTAAATTTGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
710893 GATTAAATT
1 GATTAAATT
710902 GCAAGATTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:711014 original size:10 final size:10
Alignment explanation
Indices: 710999--711047 Score: 80
Period size: 10 Copynumber: 4.9 Consensus size: 10
710989 ATTTTTTAAT
710999 GATTAAATTA
1 GATTAAATTA
*
711009 GATTAAAGTA
1 GATTAAATTA
711019 GATTAAATTA
1 GATTAAATTA
*
711029 GATTAAAGTA
1 GATTAAATTA
711039 GATTAAATT
1 GATTAAATT
711048 GCAAGATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (10 bp):
GATTAAATTA
Found at i:711024 original size:20 final size:20
Alignment explanation
Indices: 710999--711047 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
710989 ATTTTTTAAT
710999 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
711019 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
711039 GATTAAATT
1 GATTAAATT
711048 GCAAGATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:711149 original size:126 final size:125
Alignment explanation
Indices: 711019--711454 Score: 678
Period size: 126 Copynumber: 3.4 Consensus size: 125
711009 GATTAAAGTA
* *
711019 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAAATAAAACTACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
* *
711084 AAACATACTAATTTTTTTAAACATAAAGATACAA-AAATCATAAAAACATAATTTTTTTAATGAT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAA-CATAAAAACATAA----TTT--T--T
711148 TAAATT
122 T-AA-T
711154 AGATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAA
1 -GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAA
711219 TAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAAT
65 TAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACAT-AATTTTTTAAT
*
711281 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTTGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
* *
711346 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAAATAA-ATTTTAAT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTAAT
711405 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACAT
711455 ACATACTAAT
Statistics
Matches: 291, Mismatches: 7, Indels: 16
0.93 0.02 0.05
Matches are distributed among these distances:
124 57 0.20
125 2 0.01
126 112 0.38
127 1 0.00
128 2 0.01
129 2 0.01
131 1 0.00
133 3 0.01
136 106 0.36
137 5 0.02
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.32
Consensus pattern (125 bp):
GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTAAT
Found at i:711160 original size:10 final size:10
Alignment explanation
Indices: 711145--711183 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
711135 TTTTTTTAAT
711145 GATTAAATTA
1 GATTAAATTA
711155 GATTAAATTA
1 GATTAAATTA
*
711165 GATTAAAGTA
1 GATTAAATTA
711175 GATTAAATT
1 GATTAAATT
711184 GCAAGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:711297 original size:438 final size:414
Alignment explanation
Indices: 708903--711433 Score: 3445
Period size: 417 Copynumber: 6.0 Consensus size: 414
708893 AATTTTTAAT
* * *
708903 GATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATATTA
1 GATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTA
*
708968 ATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT-A-A-ATT-A
66 ATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTTAATGATTAATAGATTAA
* *
709029 G-ATTAAAGTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAA
131 GTATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAA
709093 TAAACAA-ACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGA
196 TAAA-AATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAC----ATTTTTTAATGA
*
709157 TTAAATTAGATTAAAGTAGATTAAATTTGATTAATGTAGGTTAAATTGCAAGATAGATAAAAATA
256 TT--A--AGATTAAA-TTGATTAAA---G--T-A-G-A--TTAAATTGCAAGATAGATAAAAATA
* *
709222 CATTGAAATTAGATAAATAAACATACTAATATTTTGAAACATAAAAATACAACAAATATAAAAAC
306 CATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAC
* *
709287 ATCAATTTTTTAATGAATAAATTAGATTAAAGTAGATTAAATTA
371 ATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
709331 GATTAAAGTAGATTAAATTGCAAGATAAA-AAATAATACATTGAAATTAGATAAATAAACATACT
1 GATTAAAGTAGATTAAATTGCAAGATAAATAAA-AATACATTGAAATTAGATAAATAAACATACT
* * *
709395 ATTTTTTTGAAATATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT-A-A-ATT-
65 AATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTTAATGATTAATAGATTA
*
709456 AG-ATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAA
130 AGTATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAA
** * *
709520 ATAAACTTATTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAATTTTTTTAATGA
195 ATAAAAATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAC---A-TTTTTTAATGA
* *
709585 TTAAATTAGATTAAAGTAGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATT
256 TT--A--AGATTAAA-TTGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATT
*
709650 AGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACTAACATAAAAACATAAA-TTTT
316 AGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTT
709714 TAATGATTAAATTAGATTAAAGTAGATTAAATTAGATTAAATTA
381 TAATGATTAAATTAGATT-AA--AG-------TAGATTAAATTA
*
709758 GATTAAAGTAGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATT-AA--AG-------TAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAAT
* *
709823 AAACATACTAATTTTTTGAAACATAAAAATACAACTAACATAAAAACATAA-ATTTTTAATGATT
56 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTTAATGATT
* * *
709887 -A-A-ATT-AG-ATTAAAGTAGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAA
121 AATAGATTAAGTATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAA
* *
709947 ATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACTTAAAAACATAAATT
186 ATTAGATAAATAAAAATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACAT---TT
710012 TTTAATGATTAA-ATT--A--GATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAA
248 TTTAATGATTAAGATTAAATTGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAA
* *
710072 ATTAGATAAATAAAAATTCTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATT
313 ATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATT
*
710137 TTTTAATGATTAAATTAGATTAAAGTAGATTAAATTT
378 TTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
* *
710174 GATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATATTA
1 GATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTA
* *
710239 ATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT
66 ATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTTAATGATT-AA-TAGATT
* * * *
710304 AAAGTAGATTAAATTAGATTAAATTAGATTAAATTGCAAAATAGATAAAAATACATTGAAAATAG
129 -AAGT--ATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAG
*
710369 ATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTAA
191 ATAAATAAAAATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACAT---TTTTTAA
*
710434 TGATTAA-ATT--A--GATTAAAGTAGATTAAATTGCAAGATAGATAAATATACATTGAAATTAG
253 TGATTAAGATTAAATTGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAG
*
710494 ATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTGA
318 ATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTA
*
710559 ATGATTAAATTAGATTAAAGTAGATTAAATTT
383 ATGATTAAATTAGATTAAAGTAGATTAAATTA
* * *
710591 GATTAATGTAGATTAAATTGCATGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTA
1 GATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTA
710656 ATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATT
66 ATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTTAATGATT-AA-TAGATT
710721 AGAGTATATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAG
129 A-AG--TATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAG
*
710786 ATAAATAAAAATACTAATTTTTTGAAACATAAAAATACAACAAACATATAAACATAAATTTTTTA
191 ATAAATAAAAATACTAATTTTTTGAAACATAAAAATACAACAAAC--ATAAA-A-ACA---TTT-
*
710851 ATGATTAAATTAGATTAAAGTAGATTAAATTTGATTAAAGTAGATTAAATTGCAAGATTGATAAA
248 -T--TT-AA-T-GATT--A--AGATTAAA-TTGATTAAAGTAGATTAAATTGCAAGATAGATAAA
710916 AATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAA
302 AATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAA
710981 AAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
367 AAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
*
711029 GATTAAAGTAGATTAAATTGCAAGATAAATAAAACTACATTGAAATTAGATAAATAAACATACTA
1 GATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTA
* *
711094 ATTTTTTTAAACATAAAGATACAA-AAATCATAAAAACATAATTTTTTTAATGATT-A-A-ATT-
66 ATTTTTTGAAACATAAAAATACAACAAA-CATAAAAACATAATTTTTTTAATGATTAATAGATTA
*
711154 AG-ATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAA
130 AGTATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAA
*
711218 ATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGA
195 ATAAAAATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAC----ATTTTTTAATGA
*
711283 TTAA-ATT--A--GATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTTGATA
256 TTAAGATTAAATTGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATA
*
711343 AATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAAATAAA--TTTTAATG
321 AATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATG
711406 ATTAAATTAGATTAAAGTAGATTAAATT
386 ATTAAATTAGATTAAAGTAGATTAAATT
711434 GCAAGATAGA
Statistics
Matches: 1959, Mismatches: 73, Indels: 164
0.89 0.03 0.07
Matches are distributed among these distances:
406 131 0.07
407 12 0.01
408 104 0.05
409 1 0.00
411 2 0.00
412 3 0.00
413 5 0.00
414 3 0.00
415 2 0.00
416 17 0.01
417 518 0.26
418 97 0.05
419 7 0.00
420 6 0.00
421 7 0.00
422 1 0.00
423 5 0.00
424 2 0.00
425 111 0.06
426 29 0.01
427 22 0.01
428 368 0.19
430 6 0.00
431 3 0.00
432 2 0.00
433 8 0.00
434 1 0.00
435 13 0.01
436 125 0.06
437 93 0.05
438 255 0.13
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.32
Consensus pattern (414 bp):
GATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTA
ATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAATTTTTTTAATGATTAATAGATTAA
GTATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAA
TAAAAATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATTTTTTAATGATTAAG
ATTAAATTGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAA
ACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAA
ATTAGATTAAAGTAGATTAAATTA
Found at i:711502 original size:126 final size:120
Alignment explanation
Indices: 711155--711498 Score: 364
Period size: 126 Copynumber: 2.7 Consensus size: 120
711145 GATTAAATTA
*
711155 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACAT-TGA-AA-TTAGATA
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATAT-ATAATTTTGA-A
* *
711217 A-ATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAAT
64 ACATAAAAATAC-AA------GAAACATAAAAATACAACAAACATAAAAAAATAAA-TTTTTAAT
711281 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACAT-TGA-AA-TTTGATA
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATAT-ATAATTTTGA-A
*
711343 A-ATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAAATAAA-TTTTAAT
64 ACATAAAAATAC-AA------GAAACATAAAAATACAACAAACATAAAAAAATAAATTTTTAAT
711405 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATACATACTAATTTTTT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACAT--ATA-TAA--TTTT
*
711470 GAAACATAAAAATACAACAAACATAAAAA
61 GAAACATAAAAATACAAGAAACATAAAAA
711499 AATAGAAAAT
Statistics
Matches: 205, Mismatches: 4, Indels: 20
0.90 0.02 0.09
Matches are distributed among these distances:
124 68 0.33
126 116 0.57
127 1 0.00
128 2 0.01
130 4 0.02
131 14 0.07
ACGTcount: A:0.55, C:0.07, G:0.08, T:0.30
Consensus pattern (120 bp):
GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATATATAATTTTGAAAC
ATAAAAATACAAGAAACATAAAAATACAACAAACATAAAAAAATAAATTTTTAAT
Found at i:715664 original size:22 final size:21
Alignment explanation
Indices: 715611--715665 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
715601 ATTGATAGTG
*
715611 TTATAATTATTTAATAAAATA
1 TTATTATTATTTAATAAAATA
*
715632 TTATATTTTATTTAATAACGAAT-
1 TTAT-TATTATTTAATAA--AATA
715655 TTATTATTATT
1 TTATTATTATT
715666 AAACGGTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 4 0.14
22 17 0.61
23 4 0.14
24 3 0.11
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
TTATTATTATTTAATAAAATA
Found at i:717672 original size:24 final size:25
Alignment explanation
Indices: 717624--717672 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
717614 AACATGTCTC
* *
717624 TAAATATCCAAAATAGCATAAAAAA
1 TAAACATCCAAAATAACATAAAAAA
717649 TAAACATCCAAAA-AACATAAAAAA
1 TAAACATCCAAAATAACATAAAAAA
717673 CCATCAAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.67, C:0.14, G:0.02, T:0.16
Consensus pattern (25 bp):
TAAACATCCAAAATAACATAAAAAA
Found at i:720297 original size:27 final size:29
Alignment explanation
Indices: 720263--720321 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
720253 AAAAAAGGCA
*
720263 TGCCCCCTGCCCCACGCTATATGTTTAAT
1 TGCCCTCTGCCCCACGCTATATGTTTAAT
*
720292 TGCCCTCTGCCCCGCGCTATATGTTTAAT
1 TGCCCTCTGCCCCACGCTATATGTTTAAT
720321 T
1 T
720322 ACTCCCATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.15, C:0.36, G:0.15, T:0.34
Consensus pattern (29 bp):
TGCCCTCTGCCCCACGCTATATGTTTAAT
Found at i:720508 original size:23 final size:22
Alignment explanation
Indices: 720469--720513 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
720459 TTATTATATT
*
720469 TTTAATATTTTGTATTTAATTTA
1 TTTAATATTTTGAATTT-ATTTA
720492 TTTAAGTATTTT-AATTTATTTA
1 TTTAA-TATTTTGAATTTATTTA
720514 ATATTTTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 9 0.45
24 6 0.30
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.64
Consensus pattern (22 bp):
TTTAATATTTTGAATTTATTTA
Found at i:720520 original size:17 final size:18
Alignment explanation
Indices: 720483--720521 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
720473 ATATTTTGTA
720483 TTTAATTTATTTAAGTAT
1 TTTAATTTATTTAAGTAT
720501 TTTAATTTATTTAA-TAT
1 TTTAATTTATTTAAGTAT
720518 TTTA
1 TTTA
720522 CTTCTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTAATTTATTTAAGTAT
Found at i:730025 original size:3 final size:3
Alignment explanation
Indices: 730017--730092 Score: 152
Period size: 3 Copynumber: 25.3 Consensus size: 3
730007 GGACCCCTAA
730017 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
730065 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
730093 TTAGTAACAA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:730137 original size:2 final size:2
Alignment explanation
Indices: 730130--730168 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
730120 ATAATAAACA
730130 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
730169 AATAACACTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:730268 original size:35 final size:35
Alignment explanation
Indices: 730196--730285 Score: 105
Period size: 35 Copynumber: 2.6 Consensus size: 35
730186 ACTATATAAC
*
730196 ATATATTATA-TTTTCAAAAACCATTTTAAAAACT
1 ATATATTATATTTTTCAAAAACCATTTTAAAAAAT
*
730230 ATATATTATATGTTTTCAAAAA-TATTTTAAAAAAT
1 ATATATTATAT-TTTTCAAAAACCATTTTAAAAAAT
*
730265 ATAT-TAAATATATTTTCAAAA
1 ATATAT-TATAT-TTTTCAAAA
730286 CTATATATTA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
34 11 0.22
35 28 0.57
36 10 0.20
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.43
Consensus pattern (35 bp):
ATATATTATATTTTTCAAAAACCATTTTAAAAAAT
Found at i:730289 original size:58 final size:60
Alignment explanation
Indices: 730218--730348 Score: 185
Period size: 58 Copynumber: 2.2 Consensus size: 60
730208 TTCAAAAACC
*
730218 ATTTTAAAAACTATATATTATATGTTTTCAAAA-ATATTTTAAAAA-ATATATTAAATAT
1 ATTTTCAAAACTATATATTATATGTTTTCAAAATATATTTTAAAAACATATATTAAATAT
* * *
730276 ATTTTCAAAACTATATATTATATGTTTTCAAAATGTTTTTTTTAAAAACTATATATTATATAT
1 ATTTTCAAAACTATATATTATATGTTTTCAAAA--TATATTTTAAAAAC-ATATATTAAATAT
730339 ATTTTCAAAA
1 ATTTTCAAAA
730349 AATGTTTTTT
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
58 32 0.50
61 10 0.16
63 22 0.34
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.47
Consensus pattern (60 bp):
ATTTTCAAAACTATATATTATATGTTTTCAAAATATATTTTAAAAACATATATTAAATAT
Found at i:730298 original size:23 final size:23
Alignment explanation
Indices: 730251--730308 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
730241 GTTTTCAAAA
730251 ATATTTT-AAAAAATATATTAAAT
1 ATATTTTCAAAAAATATATT-AAT
*
730274 ATATTTTCAAAACTATATATT-AT
1 ATATTTTCAAAA-AATATATTAAT
*
730297 ATGTTTTCAAAA
1 ATATTTTCAAAA
730309 TGTTTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 20 0.65
24 4 0.13
25 7 0.23
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (23 bp):
ATATTTTCAAAAAATATATTAAT
Found at i:730377 original size:41 final size:40
Alignment explanation
Indices: 730287--730451 Score: 212
Period size: 41 Copynumber: 4.2 Consensus size: 40
730277 TTTTCAAAAC
* ** *
730287 TATATAT-TATATGTTTTCAAAATGTTTTTTTTAAAAACTA
1 TATATATATATATATTTTCAAAAAATGTTTTTT-AAAACTA
730327 TATAT-TATATATATTTTCAAAAAATGTTTTTTAAAACTA
1 TATATATATATATATTTTCAAAAAATGTTTTTTAAAACTA
* *
730366 TATTATATATATATATATTCAAAAAATGTTTTTTAAAACAA
1 TA-TATATATATATATTTTCAAAAAATGTTTTTTAAAACTA
* *
730407 TATAT-TATATATATTTTCAAAAAAT-ATTTTCAAAACTA
1 TATATATATATATATTTTCAAAAAATGTTTTTTAAAACTA
730445 TATATAT
1 TATATAT
730452 TTTCAAAAAT
Statistics
Matches: 111, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
38 15 0.14
39 30 0.27
40 32 0.29
41 34 0.31
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.48
Consensus pattern (40 bp):
TATATATATATATATTTTCAAAAAATGTTTTTTAAAACTA
Found at i:730429 original size:38 final size:38
Alignment explanation
Indices: 730277--730524 Score: 223
Period size: 38 Copynumber: 6.6 Consensus size: 38
730267 ATTAAATATA
* *
730277 TTTTCAAAACTATATA-T-TATATGTTTTC-AAAATGTTT
1 TTTTTAAAACTATATATTATATATATTTTCAAAAATG--T
730314 TTTTTAAAAACTATATATTATATATATTTTCAAAAAATGT
1 TTTTT-AAAACTATATATTATATATATTTTC-AAAAATGT
*
730354 TTTTTAAAACTATATTATATATATATATATTCAAAAAATGT
1 TTTTTAAAACTATA-TAT-TATATATATTTTC-AAAAATGT
* *
730395 TTTTTAAAACAATATATTATATATATTTTCAAAAAAT-A
1 TTTTTAAAACTATATATTATATATATTTTC-AAAAATGT
*
730433 TTTTCAAAAC-------TATATATATTTTCAAAAATG-
1 TTTTTAAAACTATATATTATATATATTTTCAAAAATGT
* * * **
730463 TTTTCAAAACTATATACTATATATATATTCAAAAATAA
1 TTTTTAAAACTATATATTATATATATTTTCAAAAATGT
* *
730501 TTCTCAAAACTATATATTATATAT
1 TTTTTAAAACTATATATTATATAT
730525 GCTATATGTA
Statistics
Matches: 184, Mismatches: 11, Indels: 31
0.81 0.05 0.14
Matches are distributed among these distances:
30 16 0.09
31 13 0.07
37 22 0.12
38 42 0.23
39 29 0.16
40 22 0.12
41 34 0.18
42 6 0.03
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.46
Consensus pattern (38 bp):
TTTTTAAAACTATATATTATATATATTTTCAAAAATGT
Found at i:730435 original size:13 final size:13
Alignment explanation
Indices: 730417--730441 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
730407 TATATTATAT
730417 ATATTTTCAAAAA
1 ATATTTTCAAAAA
730430 ATATTTTCAAAA
1 ATATTTTCAAAA
730442 CTATATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
ATATTTTCAAAAA
Found at i:730458 original size:70 final size:68
Alignment explanation
Indices: 730373--730522 Score: 203
Period size: 68 Copynumber: 2.2 Consensus size: 68
730363 CTATATTATA
* * * *
730373 TATATATATATTCAAAAAATGTTTTTTAAAACAATATATTATATATATTTTCAAAAA-ATATTTT
1 TATATATATATTC-AAAAATG-TTTTCAAAACAATATACTATATATATATTCAAAAATA-ATTCT
730437 CAAAAC
63 CAAAAC
* *
730443 TATATATATTTTCAAAAATGTTTTCAAAACTATATACTATATATATATTCAAAAATAATTCTCAA
1 TATATATATATTCAAAAATGTTTTCAAAACAATATACTATATATATATTCAAAAATAATTCTCAA
730508 AAC
66 AAC
730511 TATATATTATAT
1 TATATA-TATAT
730523 ATGCTATATG
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
68 47 0.66
69 12 0.17
70 12 0.17
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (68 bp):
TATATATATATTCAAAAATGTTTTCAAAACAATATACTATATATATATTCAAAAATAATTCTCAA
AAC
Found at i:730467 original size:30 final size:31
Alignment explanation
Indices: 730412--730478 Score: 118
Period size: 30 Copynumber: 2.2 Consensus size: 31
730402 AACAATATAT
730412 TATATATATTTTCAAAAAATATTTTCAAAAC
1 TATATATATTTTCAAAAAATATTTTCAAAAC
*
730443 TATATATATTTTC-AAAAATGTTTTCAAAAC
1 TATATATATTTTCAAAAAATATTTTCAAAAC
730473 TATATA
1 TATATA
730479 CTATATATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 22 0.63
31 13 0.37
ACGTcount: A:0.46, C:0.09, G:0.01, T:0.43
Consensus pattern (31 bp):
TATATATATTTTCAAAAAATATTTTCAAAAC
Found at i:738080 original size:15 final size:16
Alignment explanation
Indices: 738055--738091 Score: 67
Period size: 15 Copynumber: 2.4 Consensus size: 16
738045 AAAAAAGGTT
738055 ATAAAAGAAAATAAAA
1 ATAAAAGAAAATAAAA
738071 ATAAAA-AAAATAAAA
1 ATAAAAGAAAATAAAA
738086 ATAAAA
1 ATAAAA
738092 TCAAGTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.14
Consensus pattern (16 bp):
ATAAAAGAAAATAAAA
Found at i:739424 original size:18 final size:17
Alignment explanation
Indices: 739398--739431 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
739388 AACATAATAT
739398 AATAAATAAATAATAAAC
1 AATAAATAAAT-ATAAAC
*
739416 AATATATAAATATAAA
1 AATAAATAAATATAAA
739432 TAACACTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AATAAATAAATATAAAC
Found at i:739553 original size:14 final size:14
Alignment explanation
Indices: 739534--739561 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
739524 TATATATTAT
739534 ATATGTTTTCAAAA
1 ATATGTTTTCAAAA
739548 ATATGTTTTCAAAA
1 ATATGTTTTCAAAA
739562 CTATATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
ATATGTTTTCAAAA
Found at i:739573 original size:39 final size:38
Alignment explanation
Indices: 739457--739797 Score: 322
Period size: 39 Copynumber: 9.2 Consensus size: 38
739447 CTATATAACA
*
739457 TATATTATATTTTCAAAAACCA-TTTTAAAAACTATATA-
1 TATA-TATATTTTCAAAAA-TATTTTTAAAAACTATATAT
* *
739495 -CTATATGTTTTCAAAAATA-TTTTAAAAACTATATAT
1 TATATATATTTTCAAAAATATTTTTAAAAACTATATAT
* *
739531 TATATATGTTTTCAAAAATATGTTTTCAAAACTATATA-
1 TATATATATTTTCAAAAATAT-TTTTAAAAACTATATAT
* *
739569 T-TATATGTTTTC-AAAATGTTTTTAAAAAACTATATAT
1 TATATATATTTTCAAAAATATTTTT-AAAAACTATATAT
*
739606 TATATATATTTTCAAAAAATATTTTTTAAAACTATATAT
1 TATATATATTTTC-AAAAATATTTTTAAAAACTATATAT
*
739645 TATATATATTTTCAAAAAATATTTTTTAAAACTATATAT
1 TATATATATTTTC-AAAAATATTTTTAAAAACTATATAT
* *
739684 TATATATATTTTTAAAAA-ATATTTTCAAAAC-------
1 TATATATATTTTCAAAAATAT-TTTTAAAAACTATATAT
* *
739715 TATATATATTTTCAAAAATGTTTTT-AAAACTAAATACT
1 TATATATATTTTCAAAAATATTTTTAAAAACTATATA-T
* * *
739753 ATATACATATTTTACAAAAA-A-TTCTCAAAACTATATAT
1 -TATATATATTTT-CAAAAATATTTTTAAAAACTATATAT
739791 TATATAT
1 TATATAT
739798 GCTATATGTA
Statistics
Matches: 262, Mismatches: 19, Indels: 45
0.80 0.06 0.14
Matches are distributed among these distances:
30 5 0.02
31 21 0.08
32 1 0.00
35 21 0.08
36 30 0.11
37 40 0.15
38 29 0.11
39 99 0.38
40 16 0.06
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (38 bp):
TATATATATTTTCAAAAATATTTTTAAAAACTATATAT
Found at i:739629 original size:13 final size:13
Alignment explanation
Indices: 739609--739719 Score: 59
Period size: 14 Copynumber: 8.5 Consensus size: 13
739599 TATATATTAT
739609 ATATATTTTCAAA
1 ATATATTTTCAAA
* *
739622 AAATATTTTTTAAA
1 ATATA-TTTTCAAA
* *
739636 ACTATATATT--AT
1 A-TATATTTTCAAA
739648 ATATATTTTCAAA
1 ATATATTTTCAAA
* *
739661 AAATATTTTTTAAA
1 ATATA-TTTTCAAA
* *
739675 ACTATATATT--AT
1 A-TATATTTTCAAA
*
739687 ATATATTTTTAAA
1 ATATATTTTCAAA
*
739700 AAATATTTTCAAA
1 ATATATTTTCAAA
739713 ACTATAT
1 A-TATAT
739720 ATATTTTCAA
Statistics
Matches: 72, Mismatches: 17, Indels: 17
0.68 0.16 0.16
Matches are distributed among these distances:
11 14 0.19
12 4 0.06
13 22 0.31
14 26 0.36
15 6 0.08
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATATTTTCAAA
Found at i:739727 original size:70 final size:69
Alignment explanation
Indices: 739645--739790 Score: 206
Period size: 69 Copynumber: 2.1 Consensus size: 69
739635 AACTATATAT
* * * * *
739645 TATATATATTTTCAAAAAATATTTTTTAAAACTATATATTATATATAT-TTTTA-AAAAATATTT
1 TATATATATTTTC-AAAAAT-GTTTTTAAAACTAAATACTATATACATATTTTACAAAAA-ATTC
739708 TCAAAAC
63 TCAAAAC
739715 TATATATATTTTCAAAAATGTTTTTAAAACTAAATACTATATACATATTTTACAAAAAATTCTCA
1 TATATATATTTTCAAAAATGTTTTTAAAACTAAATACTATATACATATTTTACAAAAAATTCTCA
739780 AAAC
66 AAAC
739784 TATATAT
1 TATATAT
739791 TATATATGCT
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
68 23 0.33
69 28 0.41
70 18 0.26
ACGTcount: A:0.47, C:0.08, G:0.01, T:0.44
Consensus pattern (69 bp):
TATATATATTTTCAAAAATGTTTTTAAAACTAAATACTATATACATATTTTACAAAAAATTCTCA
AAAC
Found at i:739744 original size:30 final size:31
Alignment explanation
Indices: 739684--739746 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
739674 AACTATATAT
739684 TATATATATTTTTAAAAAATATTTTCAAAAC
1 TATATATATTTTTAAAAAATATTTTCAAAAC
* * *
739715 TATATATA-TTTTCAAAAATGTTTTTAAAAC
1 TATATATATTTTTAAAAAATATTTTCAAAAC
739745 TA
1 TA
739747 AATACTATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 21 0.72
31 8 0.28
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (31 bp):
TATATATATTTTTAAAAAATATTTTCAAAAC
Found at i:740006 original size:7 final size:7
Alignment explanation
Indices: 739996--740029 Score: 50
Period size: 7 Copynumber: 4.6 Consensus size: 7
739986 CATTTATTTG
739996 TTTTCTTT
1 TTTTC-TT
740004 TTTTCTT
1 TTTTCTT
740011 TTTTCTT
1 TTTTCTT
740018 TTTCTCTT
1 TTT-TCTT
740026 TTTT
1 TTTT
740030 ATATATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 13 0.52
8 12 0.48
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTCTT
Found at i:740009 original size:8 final size:8
Alignment explanation
Indices: 739996--740043 Score: 53
Period size: 8 Copynumber: 5.9 Consensus size: 8
739986 CATTTATTTG
739996 TTTTCTTT
1 TTTTCTTT
740004 TTTTC-TT
1 TTTTCTTT
740011 TTTTCTTT
1 TTTTCTTT
*
740019 TTCTCTTT
1 TTTTCTTT
*
740027 TTTATATATT
1 TTT-TCT-TT
740037 TTTTCTT
1 TTTTCTT
740044 CATCCCTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
7 7 0.21
8 17 0.52
9 4 0.12
10 5 0.15
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTCTTT
Found at i:740016 original size:15 final size:15
Alignment explanation
Indices: 739996--740029 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
739986 CATTTATTTG
*
739996 TTTTCTTTTTTTCTT
1 TTTTCTTTTTCTCTT
740011 TTTTCTTTTTCTCTT
1 TTTTCTTTTTCTCTT
740026 TTTT
1 TTTT
740030 ATATATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTCTTTTTCTCTT
Found at i:740091 original size:14 final size:14
Alignment explanation
Indices: 740072--740100 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
740062 TTTTTCTCCT
740072 TTTTCCATTTTTTC
1 TTTTCCATTTTTTC
740086 TTTTCCATTTTTTC
1 TTTTCCATTTTTTC
740100 T
1 T
740101 ATTTTTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTCCATTTTTTC
Found at i:740581 original size:20 final size:20
Alignment explanation
Indices: 740528--740583 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
740518 TTGAACAAGC
*
740528 TCTTCTCATTATGAACTTAT
1 TCTTCTCATTATGAACTGAT
740548 TCTCTCTC-TT-TGAA-TGATT
1 TCT-TCTCATTATGAACTGA-T
740567 TCTTCTCATTATGAACT
1 TCTTCTCATTATGAACT
740584 CTTCTATTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
18 6 0.20
19 10 0.33
20 9 0.30
21 5 0.17
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.50
Consensus pattern (20 bp):
TCTTCTCATTATGAACTGAT
Found at i:740640 original size:119 final size:117
Alignment explanation
Indices: 740428--740747 Score: 390
Period size: 119 Copynumber: 2.7 Consensus size: 117
740418 GAACAAATTC
* * * * ** *
740428 TTCTCCCTCTTTGGATGAGTTGTTCTCATTATGAACCCTTCCACTGGAAATGGTGATTTACCTCC
1 TTCTCCCTCTTTGAATGAATTCTTCTCATTATGAA-CCTTCCATTGGAAA-AATGATTCACCTCC
740493 TTCTGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTA
64 TTCTGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTA
* * * *
740547 TTCTCTCTCTTTGAATGATTTCTTCTCATTATGAACTCTTCTATTGGAAAAATTGATCCACCTCC
1 TTCTCCCTCTTTGAATGAATTCTTCTCATTATGAAC-CTTCCATTGGAAAAA-TGATTCACCTCC
* * * *
740612 TTCTGTGATGGATTTGAGTAAAATGTTGAACAAGTTCTTCTCATTATGAACTTT
64 TTCTGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTA
* * * * *
740666 TTCTCCCTATTCGGAA-GAATGCTTCTCATTATAAACCATTCCATTGGAAATAATGATTCATCTC
1 TTCTCCCTCTT-TGAATGAATTCTTCTCATTATGAACC-TTCCATTGGAAA-AATGATTCACCTC
740730 CTTCTGTGATGGATTTGA
63 CTTCTGTGATGGATTTGA
740748 ATCTATAAAA
Statistics
Matches: 173, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
118 2 0.01
119 166 0.96
120 5 0.03
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (117 bp):
TTCTCCCTCTTTGAATGAATTCTTCTCATTATGAACCTTCCATTGGAAAAATGATTCACCTCCTT
CTGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTA
Found at i:741099 original size:101 final size:101
Alignment explanation
Indices: 740992--741289 Score: 420
Period size: 101 Copynumber: 2.9 Consensus size: 101
740982 GCTATCTCAG
* *
740992 GTGAGATAAAATTTTGTTTCAAGTGAAACAAATTCAAAATTTTTGTTTCAAGGGAAACTGTCTCA
1 GTGAGATAAAATTTT-TTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAACTGTCTCA
* *
741057 AGTGAGACGAAATTGGTTTTGAGAAAAA-AATCCCAA
65 AGCGAGACGAAATTGGTTTTAAGAAAAATAATCCCAA
** **
741093 GTGAGATAAATATTTTTTTGGAGTGAAACAATTTCAAAATTTGCATTTCAAGGGAAACTGTCTCA
1 GTGAGATAAA-ATTTTTTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAACTGTCTCA
*
741158 AGCGAGACGAAATTGGTTTTAAGAAAAATAATCTCAA
65 AGCGAGACGAAATTGGTTTTAAGAAAAATAATCCCAA
*
741195 GTGAGAT-AAATTTTTATGGTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAGCTGTCT
1 GTGAGATAAAATTTTT-T--TCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAACTGTCT
**
741259 CAAGCGAGACGAAATTTTTTTTTAAGAAAAA
63 CAAGCGAGACGAAA-TTGGTTTTAAGAAAAA
741290 CAATGTCAAA
Statistics
Matches: 175, Mismatches: 16, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
100 6 0.03
101 82 0.47
102 19 0.11
103 54 0.31
104 14 0.08
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (101 bp):
GTGAGATAAAATTTTTTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
GCGAGACGAAATTGGTTTTAAGAAAAATAATCCCAA
Found at i:746528 original size:59 final size:59
Alignment explanation
Indices: 746465--746823 Score: 184
Period size: 59 Copynumber: 6.1 Consensus size: 59
746455 TAGCACTCTC
* *
746465 AGTGCTCTATCTGGAAAAT-CATACGC-TTAGTATGATTCCCCTT-TCATTTTAGCACACGA
1 AGTGCCCTATCT-GAAAATCCATAC-CATTAGTATGATT-CCCTTACCATTTTAGCACACGA
* * * *** *
746524 AGTGCCCTAT-TCAAAAATTCATACCATTAATATGATTTTGTTACCATTTTAGCACATGA
1 AGTGCCCTATCT-GAAAATCCATACCATTAGTATGATTCCCTTACCATTTTAGCACACGA
* * * * * **
746583 AATGCCCTATGTGAAAATCCATACCATTAGTATGATTTCCTTATC-TTTGTAGCACCCTT
1 AGTGCCCTATCTGAAAATCCATACCATTAGTATGATTCCCTTACCATTT-TAGCACACGA
** * **
746642 AGTGCTTTATCT-AGAAATCCATA-CACTCAGTATGATTCCC-TACCATTTTAGCACATAA
1 AGTGCCCTATCTGA-AAATCCATACCA-TTAGTATGATTCCCTTACCATTTTAGCACACGA
* * ** * * * * **
746700 AATGCCCTATC-AAGAAATCCATA-TTTTCAATATGATTTCCTTATCATGTTAGCACACTC
1 AGTGCCCTATCTGA-AAATCCATACCATT-AGTATGATTCCCTTACCATTTTAGCACACGA
* * ** * * * *
746759 AGTGCTCC-ATATGGAAATTTATA-CACTCAGTATGATTTCCTTATCATTTTAGCACACAA
1 AGTGC-CCTATCTGAAAATCCATACCA-TTAGTATGATTCCCTTACCATTTTAGCACACGA
746818 AGTGCC
1 AGTGCC
746824 ATTCGGTAAT
Statistics
Matches: 229, Mismatches: 57, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
57 1 0.00
58 54 0.24
59 170 0.74
60 4 0.02
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (59 bp):
AGTGCCCTATCTGAAAATCCATACCATTAGTATGATTCCCTTACCATTTTAGCACACGA
Found at i:746734 original size:117 final size:118
Alignment explanation
Indices: 746565--746823 Score: 292
Period size: 117 Copynumber: 2.2 Consensus size: 118
746555 ATGATTTTGT
* ** *
746565 TACCATTTTAGCACATGAAATGCCCTATGTGAAAATCCATACCATTAGTATGATTTCCTTATC-T
1 TACCATTTTAGCACATAAAATGCCCTATAAGAAAATCCATACCATTAATATGATTTCCTTATCAT
* * * ** *
746629 TTGTAGCACCCTTAGTGCTTTATCTAGAAATCCATACACTCAGTATGA-TTCCC
66 GT-TAGCACACTCAGTGCTCCATATAGAAATCCATACACTCAGTATGATTTCCC
**
746682 TACCATTTTAGCACATAAAATGCCCTATCAAG-AAATCCATA-TTTTCAATATGATTTCCTTATC
1 TACCATTTTAGCACATAAAATGCCCTAT-AAGAAAATCCATACCATT-AATATGATTTCCTTATC
* ** *
746745 ATGTTAGCACACTCAGTGCTCCATATGGAAATTTATACACTCAGTATGATTTCCT
64 ATGTTAGCACACTCAGTGCTCCATATAGAAATCCATACACTCAGTATGATTTCCC
* * *
746800 TATCATTTTAGCACACAAAGTGCC
1 TACCATTTTAGCACATAAAATGCC
746824 ATTCGGTAAT
Statistics
Matches: 119, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
116 2 0.02
117 89 0.75
118 28 0.24
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (118 bp):
TACCATTTTAGCACATAAAATGCCCTATAAGAAAATCCATACCATTAATATGATTTCCTTATCAT
GTTAGCACACTCAGTGCTCCATATAGAAATCCATACACTCAGTATGATTTCCC
Found at i:751543 original size:51 final size:52
Alignment explanation
Indices: 751467--751597 Score: 158
Period size: 55 Copynumber: 2.5 Consensus size: 52
751457 CCTTTTCCTT
* * * *
751467 TATGACATCCATTT-AAACCAATTATGCATTTTTGTACA-CTATATATATATC
1 TATGACATCC-TTTCAAACCACTTATGCATTGTTGTACATATATATATATATA
* *
751518 TATGGCATCCTTTCATACCACTTATGCATTGTTGTACATTGTATATATATATATA
1 TATGACATCCTTTCAAACCACTTATGCATTGTTGTACA---TATATATATATATA
751573 TATGACATCCTTTCAAACCACTTAT
1 TATGACATCCTTTCAAACCACTTAT
751598 CCATGGTTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
50 3 0.04
51 30 0.45
55 34 0.51
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.41
Consensus pattern (52 bp):
TATGACATCCTTTCAAACCACTTATGCATTGTTGTACATATATATATATATA
Found at i:751771 original size:81 final size:81
Alignment explanation
Indices: 751635--755359 Score: 5134
Period size: 81 Copynumber: 46.1 Consensus size: 81
751625 ATTCCTTTAG
* * * ** * *
751635 TCTTTTACCCAAAGGCATTTAACATTTCATTTAACTTGCATAATTGACACATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
751700 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * *
751716 TCTTTTACTCAACGGTATTTAACTGTTCATCTAACTAGCATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* *
751781 ACAGTTAAGCCATTAA
66 ACAGCTAGGCCATTAA
* ** * *
751797 TCTTTTACTCAA-GGTATTTAACCGTTCATATAACTATCATAACTGACAC-TTTCCTACCAAATG
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTT-CTGCCAAATG
*
751860 CACATCTAGGCCATTAA
65 CACAGCTAGGCCATTAA
* * *
751877 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGATACCTTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
751942 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
** * *
751958 TCTTTTACTCAACGGTATTTAATTGTTCATCTAAATGGCATAATTGAAACATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* *
752023 ACAGTTAAGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * * *
752039 TCTATTACTCAACGATATTTAACCGTTCATATAACTGGCATAATTGACACTTTTTTGCAAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
752104 ACAGCTAGTCCATTAA
66 ACAGCTAGGCCATTAA
* * *
752120 TCTTTTACTCAACGGTATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
752185 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * *
752201 TCTTTTACTCAATGGTATTTAATCGTTCATCTAACTGGTATAATTGACACCA-TTCTCCCAAATG
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CATTTCTGCCAAATG
*
752265 CACAGTTAGGCCATTAA
65 CACAGCTAGGCCATTAA
* *
752282 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTACTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* *
752347 ACAGTTAGACCATTAA
66 ACAGCTAGGCCATTAA
* * *
752363 TCTTTTACTCAACGGTATTTAAACATTCATCTAACTGGCATAATT-ACACATTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* *
752427 A-TGCTAGGCCAATAA
66 ACAGCTAGGCCATTAA
* * * * *
752442 TCTTTTACTCAACGATATTTAATCATTCATCTAACTGGCATAATTGACACCTTTCTTCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
752507 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* *
752523 TCTTTTACTCAACGGTATTTAACTGTTCATCTAACTGGCATAATTGACATC-TTTCTACCAAATG
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CATTTCTGCCAAATG
752587 CACAGCTAGGCCATTAA
65 CACAGCTAGGCCATTAA
* * * * * *
752604 TCTTTTACTCAACAGTATTTAACCATTCATCTAACTGGAATAATTGACACCTTTCCT-CTAAATA
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTT-CTGCCAAATG
752668 CACAGCTAGGCCATTAA
65 CACAGCTAGGCCATTAA
* * *
752685 TCTTTTACTCAACGGTATTTAATCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
752750 ACAGCTAGGCCATTAT
66 ACAGCTAGGCCATTAA
* * *
752766 TTTTTTACTCAACGGTATTTAACCATTCATCTAACTGGCATAATTGACACATTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
752831 ACAGCTAGGTCATTAA
66 ACAGCTAGGCCATTAA
* * * * * * *
752847 TCATTTACTAAACGGTATTTAACCGTTAATTTAATTGACATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* * *
752912 TCAACTAGGCTATTAA
66 ACAGCTAGGCCATTAA
*
752928 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGT
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
752993 ATAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * * * *
753009 TATTTTACTCAACGGTATTTAATCATTCATCTAACTGGCATAGTTGACACCTTTCTACCAAATTC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
753074 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * * *
753090 TCTTTTACTCCATGGTATTTAACTGTTCATCTAACTGACATAATTGACATATTTCTGCCAAATTC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
753155 ATAGCTAAGG-CATTAA
66 ACAGCT-AGGCCATTAA
* * * * *
753171 TCTTTTACTCAATGGTATTTAACCGTTCATCTAACTGGTATAATTAATACATTTCTTCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
753236 ACATCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * *
753252 TCTTTTACTCAACGGTTTTTAACCGTTCATCTAACTGGTATAATTGACACCTTTCTAG-CAAATG
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCT-GCCAAATG
*
753316 CATAGCTAGGCCATTAA
65 CACAGCTAGGCCATTAA
* ** * *
753333 TCTTTTACTCAACGGTGTTTAACCGTTCATCTAACTACCATAGTTGAAACATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* *
753398 ACAGTTAAGCCATTAA
66 ACAGCTAGGCCATTAA
* * * *
753414 TCTTTTACTCAACAGTATTTAACCGTTCATCTAAATGGCATAATTGACACATTTCTACCAAATTC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
753479 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * *
753495 TCTTTTACTCAACGGTATTTAACCATTCATCTAACTAGCATAATTGACATATTTATGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
753560 ACAACTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * *
753576 TCTTTTACTCAATGGTATTTAACTGTTCATCTAATTGGCATAATTGACACATTTCTTCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
753641 ACATCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * *
753657 TCTTTTACTCAACGGT-TTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCAGCCAAATTC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
753721 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * *
753737 TATTTTACTC-ATGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCTAGATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
753801 A-A-CTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * *
753815 TCTTTTACTCAACGGTATTTAATCGTTGATCTAACTAGCATAATTGACACCTTTCTGCCAAATGG
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* *
753880 AGATCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* *
753896 TCTTTTACTCAACGGTATTTAACCATTCATCTAACTGGCATAATTGACACATTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
753961 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * *
753977 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGAAATATTTATGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* *
754042 ACAGTTAAGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * * * * * *
754058 TATTTTACTCAATGATATTTAATCGTTCATATAACTGGAATAATTGACACCTTTCTTCAAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
754123 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * *
754139 TCTTTTACTCAATGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTACTAAATAC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
754204 ACAGTTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * *
754220 TCTTTTACTCAACGGTATTTAATCGTTCATCTAACTGGTATAATTGACATATTTCTCCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
754285 ACAGTTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * *
754301 TCTTTTACTCAAAGGTATCTAACCGTTCATCTAACTGGCATAATTGACACCTTACTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
754366 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * *
754382 TATTTTACTCAATGGTATTTAACCATTCATCTAACTGGCATAATTGACATATTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
**
754447 ATGGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
*
754463 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACATATTT-TGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* *
754527 ACAACTAGGCCGTTAA
66 ACAGCTAGGCCATTAA
* **
754543 TCTTTTACTCAACGGTATTTAACCGTTCATCAAACT-GCATAATTGACACATTTCAACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
754607 ACTGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
*
754623 TCTTTTACTCAATGGTATTT-ACTCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATG
1 TCTTTTACTCAACGGTATTTAAC-CGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATG
*
754687 CACAACTAGGCCATTAA
65 CACAGCTAGGCCATTAA
*
754704 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACATATTT-TGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* *
754768 ACAACTAGGCCGTTAA
66 ACAGCTAGGCCATTAA
* * **
754784 TCTTTTACTCAACGGTATTTAACCGTTCATCAAACTGCCATAATTGACACATTTCAACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
754849 ACTGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
*
754865 TCTTTTACTCAATGGTATTT-ACTCGTTCATCTAACTGGCATAATTGACACATTTCTGTCCAAAT
1 TCTTTTACTCAACGGTATTTAAC-CGTTCATCTAACTGGCATAATTGACACATTTCTG-CCAAAT
*
754929 GCACAACTAGGCCATTAA
64 GCACAGCTAGGCCATTAA
* * *
754947 TCTTTTACTCAACGGTATTTAATCGTTCATCTAATTGGCATAATTG-CATC-TTTCTTCCAAATG
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CATTTCTGCCAAATG
* *
755010 CACGGCTTGGCCATTAA
65 CACAGCTAGGCCATTAA
* *
755027 TCTTTTACTCAACGGTATTTAACCATTCATATATAACTGGCATAATTGACACATTTCTGCCAAAT
1 TCTTTTACTCAACGGTATTTAACCGTTC--ATCTAACTGGCATAATTGACACATTTCTGCCAAAT
* **
755092 GCATAGCTAGGCGTTTAA
64 GCACAGCTAGGCCATTAA
*
755110 TCTTTTACTCAACGGTATTTAACAGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* *
755175 ACAGTTAGACCATTAA
66 ACAGCTAGGCCATTAA
* * * * * *
755191 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTTGCATTATTG-CACCTTTCTTCTAATTGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
*
755255 ACAACTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * *
755271 TATTTTACTCAACGATATTTAACTGTTCATCTAACTGGTATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
* *
755336 AGAGCTAGGCCGTTAA
66 ACAGCTAGGCCATTAA
755352 TCTTTTAC
1 TCTTTTAC
755360 ATTATAACTA
Statistics
Matches: 3226, Mismatches: 385, Indels: 66
0.88 0.10 0.02
Matches are distributed among these distances:
78 21 0.01
79 127 0.04
80 523 0.16
81 2409 0.75
82 93 0.03
83 53 0.02
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (81 bp):
TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
ACAGCTAGGCCATTAA
Found at i:756851 original size:20 final size:20
Alignment explanation
Indices: 756828--756883 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
756818 CCCTAACTGA
* *
756828 GGTATATATACCCTGTCTAT
1 GGTATAGATACCCTGCCTAT
*
756848 GGTATAGATACCCTGCCTCT
1 GGTATAGATACCCTGCCTAT
756868 GGTATAGATACCCTGC
1 GGTATAGATACCCTGC
756884 TAACATTCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (20 bp):
GGTATAGATACCCTGCCTAT
Found at i:763073 original size:18 final size:18
Alignment explanation
Indices: 763050--763084 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
763040 AGCAAATATT
763050 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
763068 TGTCCCGAATGACCACT
1 TGTCCCGAAGGACCACT
763085 GGATACATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.34, G:0.20, T:0.20
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:763098 original size:22 final size:22
Alignment explanation
Indices: 763070--763146 Score: 84
Period size: 22 Copynumber: 3.5 Consensus size: 22
763060 GACCACTATG
*
763070 TCCCGAATGACCACTGGATACA
1 TCCCGAAGGACCACTGGATACA
*
763092 TCCCGAAGGACCACTGGATACG
1 TCCCGAAGGACCACTGGATACA
* * **
763114 T-TCTAACGGACCACTGGATATG
1 TCCCGAA-GGACCACTGGATACA
763136 TCCCGAAGGAC
1 TCCCGAAGGAC
763147 TACTATAAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
21 3 0.07
22 40 0.87
23 3 0.07
ACGTcount: A:0.29, C:0.30, G:0.23, T:0.18
Consensus pattern (22 bp):
TCCCGAAGGACCACTGGATACA
Found at i:763707 original size:20 final size:20
Alignment explanation
Indices: 763682--763733 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
763672 CGCTAACTGA
*
763682 GGTATAGATACCCTGTCTAT
1 GGTATAGATACCCTGCCTAT
763702 GGTATAGATACCCTGCCTAT
1 GGTATAGATACCCTGCCTAT
*
763722 GTTATAGATACC
1 GGTATAGATACC
763734 TTGCTAACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (20 bp):
GGTATAGATACCCTGCCTAT
Found at i:763967 original size:22 final size:19
Alignment explanation
Indices: 763926--763968 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 19
763916 TCCTTTACAT
763926 ATACTTAACTCATATACTC
1 ATACTTAACTCATATACTC
763945 ATACTTGAACTCATTAATACTC
1 ATACTT-AACTCA-T-ATACTC
763967 AT
1 AT
763969 TCAATACATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 6 0.29
21 1 0.05
22 8 0.38
ACGTcount: A:0.37, C:0.23, G:0.02, T:0.37
Consensus pattern (19 bp):
ATACTTAACTCATATACTC
Found at i:764936 original size:20 final size:21
Alignment explanation
Indices: 764908--764959 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 21
764898 GTTAACAATG
* *
764908 GTATTGATACCAT-CTTCGTA
1 GTATCGATACCATGCCTCGTA
* *
764928 GTATCGATA-CATGCCTCTTG
1 GTATCGATACCATGCCTCGTA
764948 GTATCGATACCA
1 GTATCGATACCA
764960 CTTGAATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 3 0.12
20 21 0.81
21 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (21 bp):
GTATCGATACCATGCCTCGTA
Found at i:774269 original size:3 final size:3
Alignment explanation
Indices: 774261--774306 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
774251 GGACCCCTAA
774261 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
774307 TTAGTAACAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:774366 original size:30 final size:28
Alignment explanation
Indices: 774312--774367 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
774302 TAATATTAGT
774312 AACAACATATTATAATAAATAAATAATA
1 AACAACATATTATAATAAATAAATAATA
* *
774340 AACAATATATATATATATATATAAATAA
1 AACAACATAT-TATA-ATAAATAAATAA
774368 CACTCATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.38
29 4 0.17
30 11 0.46
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (28 bp):
AACAACATATTATAATAAATAAATAATA
Found at i:774457 original size:35 final size:34
Alignment explanation
Indices: 774390--774479 Score: 110
Period size: 35 Copynumber: 2.6 Consensus size: 34
774380 ACTATATAAC
774390 ATATATTATATTTTCAAAAACCATTTTAAAAACT
1 ATATATTATATTTTCAAAAACCATTTTAAAAACT
* *
774424 ATATATTATATGTTTTCAATAA-TATTTTAAAAACT
1 ATATATTATA--TTTTCAAAAACCATTTTAAAAACT
*
774459 ATATTAAATATATTTTCAAAA
1 ATA-T-ATTATATTTTCAAAA
774480 CTATATATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
34 10 0.21
35 23 0.48
36 10 0.21
37 5 0.10
ACGTcount: A:0.47, C:0.08, G:0.01, T:0.44
Consensus pattern (34 bp):
ATATATTATATTTTCAAAAACCATTTTAAAAACT
Found at i:774492 original size:23 final size:23
Alignment explanation
Indices: 774445--774502 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
774435 GTTTTCAATA
*
774445 ATATTTTAAAAACTATATTAAAT
1 ATATTTTCAAAACTATATTAAAT
*
774468 ATATTTTCAAAACTATA-TATTAT
1 ATATTTTCAAAACTATATTA-AAT
*
774491 ATGTTTTCAAAA
1 ATATTTTCAAAA
774503 TGTTTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 2 0.06
23 29 0.94
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.45
Consensus pattern (23 bp):
ATATTTTCAAAACTATATTAAAT
Found at i:774559 original size:38 final size:38
Alignment explanation
Indices: 774471--774646 Score: 194
Period size: 38 Copynumber: 4.5 Consensus size: 38
774461 ATTAAATATA
* * ** *
774471 TTTTCAAAACTATATA-T-TATATGTTTTCAAAATGTTT
1 TTTTTAAAACTATATATTATATATATTTTCAAAA-AATG
*
774508 TTTTTTAAACTATATATTATATATATTTTCAAAAAATG
1 TTTTTAAAACTATATATTATATATATTTTCAAAAAATG
774546 TTTTTAAAACTATATTATATATATATATATATATTCAAAAAATG
1 TTTTTAAAAC--TA-TATAT-TATATATAT-T-TTCAAAAAATG
*
774590 TTTTTTAAAACTATATATTATATATATTTTCAAAAAATA
1 -TTTTTAAAACTATATATTATATATATTTTCAAAAAATG
*
774629 TTTTCAAAACTATATATT
1 TTTTTAAAACTATATATT
774647 TTCAAAAATG
Statistics
Matches: 121, Mismatches: 9, Indels: 17
0.82 0.06 0.12
Matches are distributed among these distances:
37 14 0.12
38 28 0.23
39 24 0.20
40 3 0.02
41 14 0.12
42 14 0.12
43 3 0.02
44 11 0.09
45 10 0.08
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (38 bp):
TTTTTAAAACTATATATTATATATATTTTCAAAAAATG
Found at i:774602 original size:83 final size:82
Alignment explanation
Indices: 774481--774643 Score: 245
Period size: 83 Copynumber: 2.0 Consensus size: 82
774471 TTTTCAAAAC
* * ** * * *
774481 TATATATTATATGTTTTCAAAATGTTTTTTTTTAAACTATATATTATATATATTTTCAAAAAATG
1 TATATATTATATATATTCAAAAAATGTTTTTTAAAACTATATATTATATATATTTTCAAAAAATA
*
774546 TTTTTAAAACTATATTA
66 TTTTCAAAACTATATTA
774563 TATATATATATATATATTCAAAAAATGTTTTTTAAAACTATATATTATATATATTTTCAAAAAAT
1 TATATAT-TATATATATTCAAAAAATGTTTTTTAAAACTATATATTATATATATTTTCAAAAAAT
774628 ATTTTCAAAACTATAT
65 ATTTTCAAAACTATAT
774644 ATTTTCAAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
82 7 0.10
83 65 0.90
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (82 bp):
TATATATTATATATATTCAAAAAATGTTTTTTAAAACTATATATTATATATATTTTCAAAAAATA
TTTTCAAAACTATATTA
Found at i:774662 original size:28 final size:29
Alignment explanation
Indices: 774610--774672 Score: 110
Period size: 28 Copynumber: 2.2 Consensus size: 29
774600 CTATATATTA
774610 TATATATTTTCAAAAAATATTTTCAAAAC
1 TATATATTTTCAAAAAATATTTTCAAAAC
*
774639 TATATATTTTC-AAAAATGTTTTCAAAAC
1 TATATATTTTCAAAAAATATTTTCAAAAC
774667 TATATA
1 TATATA
774673 CTATATATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 22 0.67
29 11 0.33
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.43
Consensus pattern (29 bp):
TATATATTTTCAAAAAATATTTTCAAAAC
Found at i:774668 original size:66 final size:68
Alignment explanation
Indices: 774571--774712 Score: 218
Period size: 66 Copynumber: 2.1 Consensus size: 68
774561 TATATATATA
* * * *
774571 TATATATATTCAAAAAATGTTTTTTAAAACTATATATTATATATATTTTCAAAAA-ATATTTTCA
1 TATATATTTTCAAAAAATGTTTTTCAAAACTATATACTATATATATTTTCAAAAACA-ATTCTCA
774635 AAAC
65 AAAC
774639 TATATATTTTC-AAAAATG-TTTTCAAAACTATATACTATATATATTTTCAAAAACAATTCTCAA
1 TATATATTTTCAAAAAATGTTTTTCAAAACTATATACTATATATATTTTCAAAAACAATTCTCAA
774702 AAC
66 AAC
774705 TATATATT
1 TATATATT
774713 ATATATGCTA
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
66 51 0.74
67 8 0.12
68 10 0.14
ACGTcount: A:0.46, C:0.10, G:0.01, T:0.43
Consensus pattern (68 bp):
TATATATTTTCAAAAAATGTTTTTCAAAACTATATACTATATATATTTTCAAAAACAATTCTCAA
AAC
Found at i:774706 original size:38 final size:37
Alignment explanation
Indices: 774639--774718 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 37
774629 TTTTCAAAAC
** *
774639 TATATATTTTCAAAAATGTTTTCAAAACTATATACTA
1 TATATATTTTCAAAAAAATTCTCAAAACTATATACTA
*
774676 TATATATTTTCAAAAACAATTCTCAAAACTATATATTA
1 TATATATTTTCAAAAA-AATTCTCAAAACTATATACTA
774714 TATAT
1 TATAT
774719 GCTATATGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
37 16 0.42
38 22 0.58
ACGTcount: A:0.45, C:0.11, G:0.01, T:0.42
Consensus pattern (37 bp):
TATATATTTTCAAAAAAATTCTCAAAACTATATACTA
Found at i:783466 original size:15 final size:16
Alignment explanation
Indices: 783441--783477 Score: 67
Period size: 15 Copynumber: 2.4 Consensus size: 16
783431 AAAAAAGGTT
783441 ATAAAAGAAAATAAAA
1 ATAAAAGAAAATAAAA
783457 ATAAAA-AAAATAAAA
1 ATAAAAGAAAATAAAA
783472 ATAAAA
1 ATAAAA
783478 TCAAGTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.14
Consensus pattern (16 bp):
ATAAAAGAAAATAAAA
Found at i:783632 original size:18 final size:18
Alignment explanation
Indices: 783609--783643 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
783599 TTTTTGGAAG
*
783609 AAAAAAATAAAATAAAAT
1 AAAAAAACAAAATAAAAT
*
783627 AAAAAAACAGAATAAAA
1 AAAAAAACAAAATAAAA
783644 AGAAAAAGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.83, C:0.03, G:0.03, T:0.11
Consensus pattern (18 bp):
AAAAAAACAAAATAAAAT
Found at i:784896 original size:14 final size:13
Alignment explanation
Indices: 784865--785048 Score: 50
Period size: 14 Copynumber: 14.5 Consensus size: 13
784855 ACTATATACT
* *
784865 ATATGTTTTCAAA
1 ATATATTTTAAAA
784878 A-ATATTTTAAAA
1 ATATATTTTAAAA
*
784890 ACTATATATT--AA
1 A-TATATTTTAAAA
*
784902 ATATGTTTTCAAAA
1 ATATATTTT-AAAA
*
784916 ATATGTTTTCAAAA
1 ATATATTTT-AAAA
* *
784930 CTATATATT----
1 ATATATTTTAAAA
* *
784939 ATATGTTTTCAAA
1 ATATATTTTAAAA
*
784952 ATGT-TTTTAAAAA
1 ATATATTTT-AAAA
* *
784965 ACTATATATT--AT
1 A-TATATTTTAAAA
784977 ATATATTTTCAAAAA
1 ATATATTTT--AAAA
*
784992 ATATTTTTTAAAA
1 ATATATTTTAAAA
* * * *
785005 CTATATATTATAT
1 ATATATTTTAAAA
785018 ATAT-TTTTAAAA
1 ATATATTTTAAAA
785030 A-ATATTTTCAAAA
1 ATATATTTT-AAAA
*
785043 CTATAT
1 ATATAT
785049 ATATTTTCAA
Statistics
Matches: 123, Mismatches: 29, Indels: 37
0.65 0.15 0.20
Matches are distributed among these distances:
9 6 0.05
11 15 0.12
12 29 0.24
13 27 0.22
14 34 0.28
15 12 0.10
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (13 bp):
ATATATTTTAAAA
Found at i:785009 original size:75 final size:74
Alignment explanation
Indices: 784825--785050 Score: 269
Period size: 75 Copynumber: 3.0 Consensus size: 74
784815 CTATATAACA
** *
784825 TATATTATATTTTCAAAAACCA-TTTTAAAAACTATATACTATATGTTTTCAAAAATATTTTAAA
1 TATA-TATATTTTCAAAAAATATTTTTAAAAACTATATATTATATGTTTTCAAAAATATTTTAAA
784889 AACTATATAT
65 AACTATATAT
* * * *
784899 TAAATATGTTTTC-AAAAATATGTTTTCAAAACTATATATTATATGTTTTC-AAAATGTTTTTAA
1 TATATATATTTTCAAAAAATAT-TTTTAAAAACTATATATTATATGTTTTCAAAAAT-ATTTT-A
784962 AAAACTATATAT
63 AAAACTATATAT
* * * *
784974 TATATATATTTTCAAAAAATATTTTTTAAAACTATATATTATATATATTTTTAAAAAATATTTTC
1 TATATATATTTTCAAAAAATATTTTTAAAAACTATATA-T-TATAT-GTTTTCAAAAATATTTTA
785039 AAAACTATATAT
63 AAAACTATATAT
785051 ATTTTCAAAA
Statistics
Matches: 129, Mismatches: 14, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
72 5 0.04
73 13 0.10
74 33 0.26
75 39 0.30
76 9 0.07
77 17 0.13
78 8 0.06
79 5 0.04
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.46
Consensus pattern (74 bp):
TATATATATTTTCAAAAAATATTTTTAAAAACTATATATTATATGTTTTCAAAAATATTTTAAAA
ACTATATAT
Found at i:785016 original size:39 final size:37
Alignment explanation
Indices: 784825--785127 Score: 252
Period size: 39 Copynumber: 8.2 Consensus size: 37
784815 CTATATAACA
*
784825 TATATTATATTTTCAAAAACCATTTTAAAAACTATATA-
1 TATA-TATATTTTCAAAAA-TATTTTAAAAACTATATAT
* *
784863 -CTATATGTTTTCAAAAATATTTTAAAAACTATATAT
1 TATATATATTTTCAAAAATATTTTAAAAACTATATAT
* * *
784899 TAAATATGTTTTCAAAAATATGTTTTCAAAACTATATA-
1 TATATATATTTTCAAAAATA--TTTTAAAAACTATATAT
* *
784937 T-TATATGTTTTC-AAAATGTTTTTAAAAAACTATATAT
1 TATATATATTTTCAAAAAT-ATTTT-AAAAACTATATAT
*
784974 TATATATATTTTCAAAAAATATTTTTTAAAACTATATAT
1 TATATATATTTTC-AAAAATA-TTTTAAAAACTATATAT
* *
785013 TATATATATTTTTAAAAAATATTTTCAAAAC-------
1 TATATATA-TTTTCAAAAATATTTTAAAAACTATATAT
* * *
785044 TATATATATTTTCAAAAATGTTTTTAAAACTAAATACT
1 TATATATATTTTCAAAAATATTTTAAAAACTATATA-T
* * * *
785082 ATATACATATTTTACAAAAAAATTCTCAAAACTATATAT
1 -TATATATATTTT-CAAAAATATTTTAAAAACTATATAT
785121 TATATAT
1 TATATAT
785128 GCTATATGTA
Statistics
Matches: 219, Mismatches: 24, Indels: 44
0.76 0.08 0.15
Matches are distributed among these distances:
30 19 0.09
31 8 0.04
35 21 0.10
36 29 0.13
37 30 0.14
38 26 0.12
39 54 0.25
40 32 0.15
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (37 bp):
TATATATATTTTCAAAAATATTTTAAAAACTATATAT
Found at i:785073 original size:30 final size:31
Alignment explanation
Indices: 785013--785075 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
785003 AACTATATAT
785013 TATATATATTTTTAAAAAATATTTTCAAAAC
1 TATATATATTTTTAAAAAATATTTTCAAAAC
* * *
785044 TATATATA-TTTTCAAAAATGTTTTTAAAAC
1 TATATATATTTTTAAAAAATATTTTCAAAAC
785074 TA
1 TA
785076 AATACTATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 21 0.72
31 8 0.28
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (31 bp):
TATATATATTTTTAAAAAATATTTTCAAAAC
Found at i:785074 original size:68 final size:72
Alignment explanation
Indices: 784974--785120 Score: 212
Period size: 70 Copynumber: 2.1 Consensus size: 72
784964 AACTATATAT
* * * * * *
784974 TATATATATTTTCAAAAAATATTTTTTAAAACTATATATTATATATAT-TTTTA-AAAAATATTT
1 TATATATATTTTCAAAAAATAGTTTTTAAAACTAAATACTATATACATATTTTACAAAAAAATTC
785037 TCAAAAC
66 TCAAAAC
785044 TATATATATTTTC-AAAAAT-GTTTTTAAAACTAAATACTATATACATATTTTACAAAAAAATTC
1 TATATATATTTTCAAAAAATAGTTTTTAAAACTAAATACTATATACATATTTTACAAAAAAATTC
785107 TCAAAAC
66 TCAAAAC
785114 TATATAT
1 TATATAT
785121 TATATATGCT
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
68 23 0.33
69 11 0.16
70 35 0.51
ACGTcount: A:0.48, C:0.08, G:0.01, T:0.44
Consensus pattern (72 bp):
TATATATATTTTCAAAAAATAGTTTTTAAAACTAAATACTATATACATATTTTACAAAAAAATTC
TCAAAAC
Found at i:785121 original size:68 final size:69
Alignment explanation
Indices: 784975--785121 Score: 192
Period size: 68 Copynumber: 2.1 Consensus size: 69
784965 ACTATATATT
* * * * * *
784975 ATATATATTTTCAAAAAATATTTTTTAAAACTATATATTATATATATTTTTAAAAAATATTTTCA
1 ATATATATTTTCAAAAAATAGTTTTTAAAACTAAATACTATATACATTTTTAAAAAAAATTCTCA
785040 AAAC
66 AAAC
785044 TATATATATTTTC-AAAAAT-GTTTTTAAAACTAAATACTATATACATATTTTACAAAAAAATTC
1 -ATATATATTTTCAAAAAATAGTTTTTAAAACTAAATACTATATACAT-TTTTA-AAAAAAATTC
785107 TCAAAAC
63 TCAAAAC
785114 -TATATATT
1 ATATATATT
785122 ATATATGCTA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
68 31 0.45
69 11 0.16
70 27 0.39
ACGTcount: A:0.48, C:0.08, G:0.01, T:0.44
Consensus pattern (69 bp):
ATATATATTTTCAAAAAATAGTTTTTAAAACTAAATACTATATACATTTTTAAAAAAAATTCTCA
AAAC
Found at i:785339 original size:8 final size:8
Alignment explanation
Indices: 785326--785371 Score: 51
Period size: 7 Copynumber: 5.9 Consensus size: 8
785316 CATTTATTTG
785326 TTTTCTTT
1 TTTTCTTT
785334 TTTTC-TT
1 TTTTCTTT
785341 TTTTC-TT
1 TTTTCTTT
*
785348 TTCTCTTT
1 TTTTCTTT
*
785356 TTTATATTT
1 TTT-TCTTT
785365 TTTTCTT
1 TTTTCTT
785372 CATCCCTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 13 0.41
8 12 0.38
9 7 0.22
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTCTTT
Found at i:785380 original size:25 final size:24
Alignment explanation
Indices: 785339--785395 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
785329 TCTTTTTTTC
* *
785339 TTTTTTCTTTTCTCTTTTT-TATAT
1 TTTTTTCTTATCCCTTTTTAT-TAT
785363 TTTTTTCTTCATCCCTTTTTATTAT
1 TTTTTTCTT-ATCCCTTTTTATTAT
*
785388 TATTTTCT
1 TTTTTTCT
785396 CCTTTTTCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 9 0.32
25 18 0.64
26 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTTTTCTTATCCCTTTTTATTAT
Found at i:785418 original size:14 final size:14
Alignment explanation
Indices: 785399--785427 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
785389 ATTTTCTCCT
785399 TTTTCCATTTTTTC
1 TTTTCCATTTTTTC
785413 TTTTCCATTTTTTC
1 TTTTCCATTTTTTC
785427 T
1 T
785428 ATTTTTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTCCATTTTTTC
Found at i:785879 original size:20 final size:21
Alignment explanation
Indices: 785856--785912 Score: 68
Period size: 19 Copynumber: 2.9 Consensus size: 21
785846 GTTGAACAAG
*
785856 TTCTTCTCATTATGAACTTA-
1 TTCTTCTCATTATGAACTGAT
785876 TTCTCTCTC-TT-TGAA-TGAT
1 TTCT-TCTCATTATGAACTGAT
785895 TTCTTCTCATTATGAACT
1 TTCTTCTCATTATGAACT
785913 CTTCTATTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
18 6 0.19
19 10 0.32
20 10 0.32
21 5 0.16
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.51
Consensus pattern (21 bp):
TTCTTCTCATTATGAACTGAT
Found at i:786021 original size:120 final size:118
Alignment explanation
Indices: 785779--786075 Score: 373
Period size: 120 Copynumber: 2.5 Consensus size: 118
785769 GGATGAGTTA
* **
785779 TTCTCATTATGAACCCTTCCACTGGAAATGGTGATTCACCTCCTTCTGTGATGGA-TTTGAGCAA
1 TTCTCATTATGAA-CCTTCCATTGGAAA-AATGATTCACCTCCTTCTGTGATGGATTTTGAGCAA
* * * * *
785843 AAGGTTGAACAAGTTCTTCTCATTATGAACTTATTCTCTCTCTTTGAATGATTTC
64 AAGGTTGAACAAGTTCTTCTCATTATGAACTTATTCTCCCTATTGGAATGAATGC
* * * *
785898 TTCTCATTATGAACTCTTCTATTGGAAAAATTGATCCACCTCCTTCTGTAATGGATTTTGAGTAA
1 TTCTCATTATGAAC-CTTCCATTGGAAAAA-TGATTCACCTCCTTCTGTGATGGATTTTGAGCAA
* *
785963 AATGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTCCCTATTCGGAA-GAATGC
64 AAGGTTGAACAAGTTCTTCTCATTATGAACTTATTCTCCCTATT-GGAATGAATGC
* *
786018 TTCTCATTATAAACCATTCCATTGGAAATAATGATTCATCTCCTTCTGTGATGGATTT
1 TTCTCATTATGAACC-TTCCATTGGAAA-AATGATTCACCTCCTTCTGTGATGGATTT
786076 GAATCTATAA
Statistics
Matches: 153, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
118 1 0.01
119 47 0.31
120 100 0.65
121 5 0.03
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.39
Consensus pattern (118 bp):
TTCTCATTATGAACCTTCCATTGGAAAAATGATTCACCTCCTTCTGTGATGGATTTTGAGCAAAA
GGTTGAACAAGTTCTTCTCATTATGAACTTATTCTCCCTATTGGAATGAATGC
Found at i:786438 original size:102 final size:102
Alignment explanation
Indices: 786322--786618 Score: 429
Period size: 101 Copynumber: 2.9 Consensus size: 102
786312 GCTATCTCAG
* *
786322 GTGAGATAAA-ATTTTGTTTCAAGTGAAACAAATTCAAAATTTTTGTTTCAAGGGAAACTGTCTC
1 GTGAGATAAATATTTT-TTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAACTGTCTC
* *
786386 AAGTGAGACGAAATTGGTTTTGAGAAAAA-AATCCCAA
65 AAGCGAGACGAAATTGGTTTTAAGAAAAATAATCCCAA
* ** **
786423 TTGAGATAAATATTTTTTTGGAGTGAAACAATTTCAAAATTTGCATTTCAAGGGAAACTGTCTCA
1 GTGAGATAAATATTTTTTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAACTGTCTCA
*
786488 AGCGAGACGAAATTGGTTTTAAGAAAAATAATCTCAA
66 AGCGAGACGAAATTGGTTTTAAGAAAAATAATCCCAA
* *
786525 GTGAGATAAAT-TTTTATTTCATGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAGCTGTCTC
1 GTGAGATAAATATTTT-TTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAACTGTCTC
*
786589 AAGCGAGACGAAATTTGTTTTTAAGAAAAA
65 AAGCGAGACGAAA-TTGGTTTTAAGAAAAA
786619 CAATGTCAAA
Statistics
Matches: 174, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
101 82 0.47
102 77 0.44
103 15 0.09
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (102 bp):
GTGAGATAAATATTTTTTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAACTGTCTCA
AGCGAGACGAAATTGGTTTTAAGAAAAATAATCCCAA
Found at i:786620 original size:66 final size:67
Alignment explanation
Indices: 786550--786694 Score: 165
Period size: 66 Copynumber: 2.2 Consensus size: 67
786540 ATTTCATGTG
* * *
786550 AAACAATTTCAAAAT-TT-GTGT-TTCAAGGGAAG-CTGTCTCAAGCGAGACGAAATTTGTTTTT
1 AAACAATATCAAAATGTTCGTGTCTT-AA-GGAAGACTGTATCAAGCGAGACAAAATTTG-TTTT
786611 AAGAA
63 AAGAA
* * * *
786616 AAACAATGTC-AAATGTTCGTGTCTTGAGGAAGACTGTATCAAGTGAGACAAAATTTGTTTTGAG
1 AAACAATATCAAAATGTTCGTGTCTTAAGGAAGACTGTATCAAGCGAGACAAAATTTGTTTTAAG
786680 AA
66 AA
786682 AAACAATATCAAA
1 AAACAATATCAAA
786695 TGAGATAAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
65 4 0.06
66 33 0.49
67 28 0.42
68 2 0.03
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (67 bp):
AAACAATATCAAAATGTTCGTGTCTTAAGGAAGACTGTATCAAGCGAGACAAAATTTGTTTTAAG
AA
Found at i:797506 original size:59 final size:60
Alignment explanation
Indices: 797443--797801 Score: 192
Period size: 59 Copynumber: 6.1 Consensus size: 60
797433 TAGCACTCTC
* *
797443 AGTGCTCTATCTAGAAAAT-CATACGC-TTAGTATGATTCCCCTT-TCATTTTAGCACACGA
1 AGTGCCCTATCTAGAAAATCCATAC-CATTAGTATGATT-CCCTTACCATTTTAGCACACGA
* * *** *
797502 AGTGCCCTAT-TCA-AAAATTCATACCATTAATATGATTTTGTTACCATTTTAGCACATGA
1 AGTGCCCTATCT-AGAAAATCCATACCATTAGTATGATTCCCTTACCATTTTAGCACACGA
* * * * * **
797561 AATGCCCTATGT-GAAAATCCATACCATTAGTATGATTTCCTTATC-TTTGTAGCACCCTT
1 AGTGCCCTATCTAGAAAATCCATACCATTAGTATGATTCCCTTACCATTT-TAGCACACGA
** * **
797620 AGTGCTTTATCTAG-AAATCCATA-CACTCAGTATTGATTCCC-TACCATTTTAGCACATAA
1 AGTGCCCTATCTAGAAAATCCATACCA-TTAGTA-TGATTCCCTTACCATTTTAGCACACGA
* * ** * * * **
797679 AATGCCCTATCAAG-AAATCCATA-TTTTCAATATGATTTCCTTATCA-TTTAGCACACTC
1 AGTGCCCTATCTAGAAAATCCATACCATT-AGTATGATTCCCTTACCATTTTAGCACACGA
* * ** * * * *
797737 AGTGCTCC-ATAT-GGAAATTTATA-CACTCAGTATGATTTCCTTATCATTTTAGCACACAA
1 AGTGC-CCTATCTAGAAAATCCATACCA-TTAGTATGATTCCCTTACCATTTTAGCACACGA
797796 AGTGCC
1 AGTGCC
797802 ATTCGGTAAT
Statistics
Matches: 231, Mismatches: 52, Indels: 35
0.73 0.16 0.11
Matches are distributed among these distances:
57 1 0.00
58 62 0.27
59 156 0.68
60 12 0.05
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (60 bp):
AGTGCCCTATCTAGAAAATCCATACCATTAGTATGATTCCCTTACCATTTTAGCACACGA
Found at i:797665 original size:118 final size:117
Alignment explanation
Indices: 797543--797801 Score: 290
Period size: 117 Copynumber: 2.2 Consensus size: 117
797533 ATGATTTTGT
* ** *
797543 TACCATTTTAGCACATGAAATGCCCTAT-GTGAAAATCCATACCATT-AGTATGATTTCCTTATC
1 TACCATTTTAGCACATAAAATGCCCTATCAAG-AAATCCATA-CATTCAATATGATTTCCTTATC
* * * ** *
797606 TTTGTAGCACCCTTAGTGCTTTATCTAGAAATCCATACACTCAGTATTGA-TTCCC
64 ATT-TAGCACACTCAGTGCTCCATATAGAAATCCATACACTCAGTA-TGATTTCCC
**
797661 TACCATTTTAGCACATAAAATGCCCTATCAAGAAATCCATATTTTCAATATGATTTCCTTATCAT
1 TACCATTTTAGCACATAAAATGCCCTATCAAGAAATCCATACATTCAATATGATTTCCTTATCAT
* ** *
797726 TTAGCACACTCAGTGCTCCATATGGAAATTTATACACTCAGTATGATTTCCT
66 TTAGCACACTCAGTGCTCCATATAGAAATCCATACACTCAGTATGATTTCCC
* * *
797778 TATCATTTTAGCACACAAAGTGCC
1 TACCATTTTAGCACATAAAATGCC
797802 ATTCGGTAAT
Statistics
Matches: 119, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
116 3 0.03
117 61 0.51
118 54 0.45
119 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (117 bp):
TACCATTTTAGCACATAAAATGCCCTATCAAGAAATCCATACATTCAATATGATTTCCTTATCAT
TTAGCACACTCAGTGCTCCATATAGAAATCCATACACTCAGTATGATTTCCC
Done.