Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003422.1 Hibiscus syriacus cultivar Beakdansim tig00007205_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51530

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5476--5522
20
2.3
20
89
10
69
61
0
8
29
1.25
5672--5719
3
16.0
3
86
0
69
31
37
2
29
1.69
5672--5719
18
2.7
18
96
0
87
31
37
2
29
1.69
7570--7625
18
3.2
17
80
12
51
60
5
0
33
1.19
7586--7634
18
3.0
16
77
13
55
67
2
0
30
1.02
10817--10945
35
3.6
36
73
13
122
28
17
15
38
1.90
10804--10945
72
2.0
72
90
2
223
27
16
16
39
1.90
26141--26189
25
1.9
26
84
12
66
51
0
0
48
1.00
26283--26333
20
2.5
22
75
21
56
39
7
0
52
1.30
27594--27635
21
2.0
21
86
9
59
35
4
0
59
1.19
28922--29008
38
2.3
38
88
5
124
12
9
37
40
1.75
28496--29058
243
2.2
246
86
10
795
24
12
27
36
1.91
30860--30892
14
2.4
14
100
0
66
51
0
0
48
1.00
31891--32017
66
1.9
66
98
0
245
29
7
25
37
1.82
40378--40540
22
7.8
22
77
8
135
20
22
28
28
1.98
40377--40540
44
3.9
42
79
10
167
20
22
28
29
1.98
40377--40521
66
2.3
62
84
4
173
20
22
27
29
1.98
40400--40540
40
3.4
40
84
5
167
19
21
29
29
1.98
47346--47507
22
7.7
22
84
5
160
17
21
30
30
1.97
47433--47484
18
2.9
18
97
0
95
11
15
38
34
1.83
47345--47524
58
3.0
58
78
8
164
17
21
30
30
1.96
47345--47526
40
4.4
40
74
13
147
18
21
29
30
1.97

Tables:   1

The End!