genome.fa.s3423.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003423.1 Hibiscus syriacus cultivar Beakdansim tig00007207_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108783

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3208--3266	21	2.8	21	81	0	82	20	38	30	10	1.86
4267--4323	29	1.9	29	85	3	78	52	1	5	40	1.34
4580--4680	53	1.9	53	93	0	175	42	11	9	35	1.75
5177--5235	28	2.1	28	83	0	73	55	11	10	22	1.65
5277--5306	14	2.1	14	100	0	60	10	30	6	53	1.60
9160--9195	18	2.0	18	88	0	54	16	11	38	33	1.84
15592--15629	18	2.1	18	90	0	58	21	10	36	31	1.87
20622--20655	17	2.0	17	88	0	50	20	26	26	26	1.99
23116--23243	48	2.7	49	85	3	136	25	13	19	41	1.88
23114--23225	24	4.7	24	87	4	154	25	15	19	40	1.90
23441--23465	2	12.5	2	100	0	50	48	0	0	52	1.00
27859--27994	48	2.8	49	86	4	161	24	13	20	41	1.88
27862--27976	24	4.8	24	88	4	160	23	15	20	40	1.90
29494--29523	2	15.0	2	100	0	60	50	0	0	50	1.00
31879--31963	38	2.2	38	95	0	152	24	5	32	36	1.80
40537--40585	6	8.8	6	78	17	61	51	0	0	48	1.00
40537--40585	10	4.5	11	78	17	57	51	0	0	48	1.00
40534--40585	16	3.3	16	89	2	79	51	0	0	48	1.00
40541--40583	22	2.0	22	90	9	70	48	0	0	51	1.00
42699--42767	34	2.0	34	100	0	138	30	20	8	40	1.82
44689--44752	16	4.0	16	81	0	65	45	32	15	6	1.71
44850--44892	3	14.3	3	82	0	50	37	4	0	58	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47156--47190	6	5.8	6	93	0	61	54	14	0	31	1.40
48789--48822	17	2.0	17	100	0	68	11	5	5	76	1.14
48840--48888	23	2.2	22	81	3	53	24	10	0	65	1.23
50040--50191	39	3.9	39	81	0	178	20	27	21	30	1.98
50040--50187	78	1.9	78	88	0	224	19	28	20	31	1.97
50551--50587	2	18.5	2	88	0	56	45	0	5	48	1.25
56777--56973	39	5.1	38	76	6	157	20	26	21	30	1.98
56777--56978	78	2.6	78	88	1	289	20	26	21	31	1.98
63223--63288	33	2.0	33	100	0	132	21	6	27	45	1.75
64819--64849	15	2.1	15	100	0	62	38	19	0	41	1.51
70593--70641	20	2.5	20	86	3	64	53	4	12	30	1.57
72240--72274	11	3.2	11	87	0	52	17	2	5	74	1.14
72254--72294	18	2.2	19	83	12	50	14	4	2	78	1.03
72254--72298	19	2.4	19	82	10	56	15	4	2	77	1.02
72950--72984	11	3.2	11	87	0	52	17	2	5	74	1.14
71831--73251	710	2.0	710	98	0	2747	26	10	11	50	1.72
84829--84863	13	2.7	13	100	0	70	22	34	8	34	1.85
88016--88083	29	2.3	29	100	0	136	35	10	14	39	1.80
89006--89052	21	2.2	21	84	3	58	23	23	27	25	2.00
91339--91512	73	2.4	73	92	0	276	33	16	11	39	1.84
91498--91751	39	6.5	39	86	5	336	29	17	14	38	1.89
91493--91762	117	2.3	116	86	7	386	31	17	13	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91772--92128	135	2.6	135	83	5	418	35	15	22	25	1.94
92728--92785	19	3.1	19	100	0	116	31	15	15	37	1.89
97529--97586	30	1.9	30	89	0	89	37	22	27	12	1.89
103196--103264	3	22.3	3	85	11	95	36	0	0	63	0.94
103196--103264	16	4.5	15	89	7	95	36	0	0	63	0.94

Tables:   1

The End!