Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003425.1 Hibiscus syriacus cultivar Beakdansim tig00007216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67791
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:3062 original size:12 final size:11
Alignment explanation
Indices: 3033--3081 Score: 53
Period size: 12 Copynumber: 4.3 Consensus size: 11
3023 CCTTGGCTTG
3033 CTTTTCTTTTT
1 CTTTTCTTTTT
***
3044 GAATTCTCTTTT
1 CTTTTCT-TTTT
3056 CTTTTCTTTCTT
1 CTTTTCTTT-TT
3068 CTTTTCTTTTT
1 CTTTTCTTTTT
3079 CTT
1 CTT
3082 CTTTTGTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
11 11 0.37
12 19 0.63
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.73
Consensus pattern (11 bp):
CTTTTCTTTTT
Found at i:3067 original size:9 final size:8
Alignment explanation
Indices: 3052--3104 Score: 56
Period size: 9 Copynumber: 6.5 Consensus size: 8
3042 TTGAATTCTC
3052 TTTTCTTT
1 TTTTCTTT
*
3060 TCTTTCTTC
1 T-TTTCTTT
3069 TTTTCTTT
1 TTTTCTTT
3077 TTCTTCTTT
1 TT-TTCTTT
3086 TGTTT-TTT
1 T-TTTCTTT
3094 TTTT-TTT
1 TTTTCTTT
3101 TTTT
1 TTTT
3105 TTTGCACTCC
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
7 10 0.25
8 13 0.32
9 16 0.40
10 1 0.03
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (8 bp):
TTTTCTTT
Found at i:3094 original size:17 final size:16
Alignment explanation
Indices: 3052--3107 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
3042 TTGAATTCTC
*
3052 TTTTCTTTTCTTTCTTCT
1 TTTTTTTTTC-TTCTT-T
*
3070 TTTCTTTTTCTTCTTT
1 TTTTTTTTTCTTCTTT
3086 TGTTTTTTTT-TT-TTT
1 T-TTTTTTTTCTTCTTT
3101 TTTTTTT
1 TTTTTTT
3108 GCACTCCAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
14 6 0.18
15 4 0.12
16 4 0.12
17 12 0.35
18 8 0.24
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (16 bp):
TTTTTTTTTCTTCTTT
Found at i:3098 original size:26 final size:26
Alignment explanation
Indices: 3054--3104 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
3044 GAATTCTCTT
3054 TTCTTTTCTTTCTTCTTTTCTTTTTC
1 TTCTTTTCTTTCTTCTTTTCTTTTTC
* * * *
3080 TTCTTTTGTTTTTTTTTTTTTTTTT
1 TTCTTTTCTTTCTTCTTTTCTTTTT
3105 TTTGCACTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.00, C:0.14, G:0.02, T:0.84
Consensus pattern (26 bp):
TTCTTTTCTTTCTTCTTTTCTTTTTC
Found at i:3105 original size:9 final size:9
Alignment explanation
Indices: 3052--3107 Score: 55
Period size: 8 Copynumber: 6.4 Consensus size: 9
3042 TTGAATTCTC
3052 TTTTCTTTT
1 TTTTCTTTT
* *
3061 CTTTC-TTC
1 TTTTCTTTT
3069 TTTTCTTTT
1 TTTTCTTTT
*
3078 TCTTCTTTT
1 TTTTCTTTT
3087 GTTTT-TTTT
1 -TTTTCTTTT
3096 TTTT-TTTT
1 TTTTCTTTT
3104 TTTT
1 TTTT
3108 GCACTCCAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
8 18 0.46
9 18 0.46
10 3 0.08
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:3386 original size:19 final size:19
Alignment explanation
Indices: 3359--3408 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
3349 ATAATGGGTT
3359 TAAGAAATGAACAAT-AAT-A
1 TAAG-AATGAA-AATAAATAA
3378 TAAGTAATGAAAATAAATAA
1 TAAG-AATGAAAATAAATAA
3398 TAAGAATGAAA
1 TAAGAATGAAA
3409 TGAAAAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 3 0.11
19 20 0.71
20 5 0.18
ACGTcount: A:0.64, C:0.02, G:0.12, T:0.22
Consensus pattern (19 bp):
TAAGAATGAAAATAAATAA
Found at i:9896 original size:29 final size:29
Alignment explanation
Indices: 9863--9920 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
9853 AAAATGGAGG
9863 TATGGGACTCAAGGACTCAATGCTCTTTT
1 TATGGGACTCAAGGACTCAATGCTCTTTT
*
9892 TATGGGATTCAAGGACTCAATGCTCTTTT
1 TATGGGACTCAAGGACTCAATGCTCTTTT
9921 GGTTTGATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (29 bp):
TATGGGACTCAAGGACTCAATGCTCTTTT
Found at i:13383 original size:30 final size:30
Alignment explanation
Indices: 13347--13404 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
13337 AGTGAACCGG
*
13347 CGGTTCAAACCGGTTTTGCCGGTTTTCAGC
1 CGGTTCAAACCGGTTTTACCGGTTTTCAGC
*
13377 CGGTTCAACCCGGTTTTACCGGTTTTCA
1 CGGTTCAAACCGGTTTTACCGGTTTTCA
13405 TTACCAGCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.14, C:0.28, G:0.24, T:0.34
Consensus pattern (30 bp):
CGGTTCAAACCGGTTTTACCGGTTTTCAGC
Found at i:14503 original size:10 final size:10
Alignment explanation
Indices: 14487--14525 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
14477 ATTTTTTAAT
14487 GATTAAATTA
1 GATTAAATTA
* *
14497 TATTAAAGTA
1 GATTAAATTA
14507 GATTAAATTA
1 GATTAAATTA
14517 GATTAAATT
1 GATTAAATT
14526 GCAAGATAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:14546 original size:136 final size:136
Alignment explanation
Indices: 14388--18607 Score: 5047
Period size: 136 Copynumber: 30.8 Consensus size: 136
14378 TTTATTGAGT
* * *
14388 TTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAATATATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
14453 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTATATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
14518 ATTAAA
131 ATTAAA
14524 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
14589 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG------TT-G
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
14644 ATTAAA
131 ATTAAA
* * *
14650 TTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTCGAAATATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
14715 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
14780 ATTAAA
131 ATTAAA
* * * *
14786 TTACAAGATAAATAAAAATACATTGAAATTAGATAAATAAACCTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* * *
14851 AATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAATTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
14916 ATTAAA
131 ATTAAA
* * * * * * * * *
14922 GTAG-ATTAAATTAGATTAAAGTAGATT-AAATTCCAAGATAGATAAAAATAC--ATTGAAATTA
1 -TTGCA--AGA-TAGATAAAAATACATTGAAATT---AGATAAATAAACATACTAATT---TTTT
* * * ** ** **
14983 GATAA-ATAAACATACTAATTTTTTGAAACATAAAAATACTAAAAATTAAAAACA-TAAATTTTT
56 GA-AACATAAAAATAC-AA------CAAACATAAAAACA-TAAATTTTTTAATGATTAAA---TT
* *
15046 AATGATTAAATTAGATTAAAGTAGATTAAA
109 -A-GATTAAAGTAGATTAAATTAGATTAAA
* * * * * *
15076 TT---AGATTAAAGT-AGATTACATT-ACAAGATAGATAAA-AATACAT--TGAA--ATTAGATA
1 TTGCAAGA-TAGA-TAAAAATACATTGA-AA-TTAGATAAATAA-ACATACT-AATTTTTTGA-A
* * *** ** ** *
15131 A-ATAAACATACTAATTTTTTGAAACATAAAAATACA-ACAAACATAAAAACA-TAAATT--TTT
59 ACATAAAAATAC-AA------CAAACAT-AAAA-ACATA-AATTTTTTAATGATTAAATTAGATT
*
15191 TAA-TA-ATTAAATTAGATTAAA
114 AAAGTAGATTAAATTAGATTAAA
* * * * * * * * * * *
15212 GTAG-ATTAAATTTGATTAAAGTAGATT-AAATCGCAAGATAGATAAAAATAC--ATTGAAATTA
1 -TTGCA--AGA-TAGATAAAAATACATTGAAAT---TAGATAAATAAACATACTAATT---TTTT
* * *** ** **
15273 GATAA-ATAAACATACTAATTTTTTGAAACATAAAAATACA-ACAAACATAAAAACA-TAAATTT
56 GA-AACATAAAAATAC-AA------CAAACAT-AAAA-ACATA-AATTTTTTAATGATTAAA---
* * *
15335 TTTAATGATTAAATTAGATTAAAGTAGATAAAA
107 -TT-A-GATTAAAGTAGATTAAATTAGATTAAA
*
15368 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
15433 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
15498 ATTAAA
131 ATTAAA
15504 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
15569 AATACAACAAACATAAAAACATAAAATTTTTAATGATTAAATTAGATT-AA-T-G------TT-G
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
15624 ATTAAA
131 ATTAAA
*
15630 TTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
15695 AATACAACAAACATAAAAACATAAATTTTTTAATGATT--A--A-ATT--AG-A-A-TAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
15750 ATTAAA
131 ATTAAA
* *
15756 TTGCAAGATAGATAAAAATATATTGAAATTAGATAAATATACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
15821 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG-------TAG
15885 ATTAAATTAGATTAAA
121 ATTAAATTAGATTAAA
* *
15901 TTGCATGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATGTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
15966 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT--A--A-
16030 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
16046 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
16111 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT-AA----
16176 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
*
16192 TTGCAAGATAGATAAAAATATATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
16257 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG-------TAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
16312 ATTAAA
131 ATTAAA
* * *
16318 TTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAATATATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
16383 AATACAACAAACATAAAAACATAAATTTTTTAATGATT--A--A-A-T----TAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
16438 ATTAAA
131 ATTAAA
*
16444 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATAATAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
16509 AATACAACAAACATAAAAACATAAATTTTTTTAA-GATTAAATTAGATTAAAGTAGATTAAAGTA
66 AATACAACAAACATAAAAACATAAA-TTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
16573 GATTAAA
130 GATTAAA
*
16580 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACAAACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
16645 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAG-----A-TT-
16710 ATTAATGTAGATTAAA
124 A--AAT-TAGATTAAA
*
16726 TTGCAAGATAGATAAAAAATACATTGAAATTAGATAAATAAACATACTAATATTTTGAAACATAA
1 TTGCAAGATAGAT-AAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAA
* * *
16791 AAATACAACAAAAATAAAAACATCAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTA
65 AAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
16856 GATTAAA
130 GATTAAA
* * *
16863 TTGTAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAATATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
16928 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG-------TAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
16983 ATTAAA
131 ATTAAA
* *
16989 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACTTATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* * *
17054 AATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTAGATTTAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
17119 ATTAAA
131 ATTAAA
* *
17125 TTGCAATATAGATAAAAATACATTGAAATTAGATAAATAAACATTCTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
17190 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAT
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
17255 ATTAAA
131 ATTAAA
17261 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
17326 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATT-AA--AG-------TAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
17380 ATTAAA
131 ATTAAA
*
17386 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTAAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
17451 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTTGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT-AA----
17516 ATTAAAGTAGATTAAA
126 A-T----TAGATTAAA
* *
17532 TTGCAATATAGATAAAAATACATTGAAATTAGATAAATAAACATATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
17597 AATACAAAAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG-------TAG
17662 ATTAAATTAGATTAAA
121 ATTAAATTAGATTAAA
17678 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
17743 AATACAACAAACATAAAAACATAAA-ATCTTAATGATTAAATTAGATT-AA--AG-------TAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
17797 ATTAAA
131 ATTAAA
*
17803 TTGCAAGATAGATAAATATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* * *
17868 AATACAACAAACATAAAAACATAAATTTTTTAATGAATAAATTAGATTAAATTTGATT-AATGTA
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAT-TA
17932 GATTAAA
130 GATTAAA
*
17939 TTGCATGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
18004 AATACAACAAACATAAAAACATAATTTTTTTTAATGATTAAATTAGATTAAAGTATATTAAATTA
66 AATACAACAAACATAAAAACATAA-ATTTTTTAATGATTAAATTAGATTAAAG----------TA
*
18069 GATTAAAGTAGATTAAA
120 GATTAAATTAGATTAAA
*
18086 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* * *
18151 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAATTTGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
18216 ATTAAA
131 ATTAAA
*
18222 TTGCAAGATTGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACAT-AA
* *
18287 AAATACAACAATCATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
65 AAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT--A--A
18352 GATTAAAGTAGATTAAA
126 -A-T----TAGATTAAA
* *
18369 TTGCAAGATAAATAAAACTACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* * *
18434 AATACAA-AAATCATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAATTAGATTAAAGTA
66 AATACAACAAA-CATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
*
18498 TATTAAA
130 GATTAAA
18505 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
18570 AATACAACAAACATAAAAACATAAATTTTTTAATGATT
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATT
18608 TGCAAGATAG
Statistics
Matches: 3657, Mismatches: 199, Indels: 456
0.85 0.05 0.11
Matches are distributed among these distances:
119 2 0.00
120 2 0.00
121 4 0.00
122 2 0.00
124 2 0.00
125 208 0.06
126 682 0.19
127 21 0.01
128 1 0.00
129 8 0.00
130 4 0.00
131 1 0.00
132 5 0.00
133 5 0.00
134 3 0.00
135 45 0.01
136 1118 0.31
137 111 0.03
138 15 0.00
139 17 0.00
140 5 0.00
141 42 0.01
142 40 0.01
143 18 0.00
144 40 0.01
145 265 0.07
146 543 0.15
147 276 0.08
148 11 0.00
149 37 0.01
150 27 0.01
151 15 0.00
152 2 0.00
153 17 0.00
154 36 0.01
155 6 0.00
156 21 0.01
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.32
Consensus pattern (136 bp):
TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
ATTAAA
Found at i:14764 original size:10 final size:10
Alignment explanation
Indices: 14749--14785 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
14739 ATTTTTTAAT
*
14749 GATTAAATTA
1 GATTAAAGTA
14759 GATTAAAGTA
1 GATTAAAGTA
14769 GATTAAAGTA
1 GATTAAAGTA
14779 GATTAAA
1 GATTAAA
14786 TTACAAGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.16, T:0.32
Consensus pattern (10 bp):
GATTAAAGTA
Found at i:14865 original size:262 final size:264
Alignment explanation
Indices: 14388--18607 Score: 3996
Period size: 283 Copynumber: 15.4 Consensus size: 264
14378 TTTATTGAGT
* * *
14388 TTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAATATATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
14453 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTATATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
14518 ATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAA
131 ATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAA
14583 CATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAG-TT-GAT
196 CATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGATTAGAT
14646 TAAA
261 TAAA
* * *
14650 TTGTAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTCGAAATATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
14715 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
* * * *
14780 ATTAAATTACAAGATAAATAAAAATACATTGAAATTAGATAAATAAACCTATTAATTTTTTGAAA
131 ATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAA
* *
14845 CATAAAAATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATT-AA-ATTAGAT
196 CATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGATTAGAT
14908 TAAA
261 TAAA
* * * * **** * *
14912 TT---AGAT---T-AAAGTAGATT-AAATTAGATTAAAGTAGA-TTA--AATTCCAAGATAGATA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGA-TAAA-TAAACATACTAATTTTTTGAAACATA
* ** * *
14966 AAAATACATTGA-AATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACTAAAAATT
64 AAAATACA---ACAA--ACAT-AA-AAACATA--AATTTTTT-AATGAT-TAAAT--T--AGATT
* * ** * * *
15030 AAA-AACA-TAAA-T-TTTTAATGATT--AA-ATTAGATTAAAGTAGATT-AAATTAGATTAAAG
114 AAAGTAGATTAAAGTAGATTAA--ATTGCAAGA-TAGATAAAAATACATTGAAATTAGA-TAAA-
* * **** * * *
15087 TAGA-TTAC--ATTACAAGATAGATAAAAATACATTGA-AATTAGATAAATAAACATACTAATTT
174 TAAACATACTAATTTTTTGAAACATAAAAATACA---ACAA--ACAT-AA-AAACATA--AATTT
** * * * ** * * * *
15148 TTTGAAACATAAAAATACAACAAACATAAAAACATAAA
230 TTT-AATGATTAAATTAGATTAAAGAT-TAGA-TTAAA
*** * * * * * ** * * ** *
15186 TTTTTTA-ATA-ATTAAATTAGATT-AAAGTAGATTAAATTTGATTAAAGTAGATTAAATCGCAA
1 -TTGCAAGATAGATAAAAATACATTGAAATTAGA-TAAA--TAAACATACTA-ATT-TTTTG--A
* * ** * * *
15248 GATAGATAAAAATACATTGA-AATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATAC
58 -A-ACATAAAAATACA---ACAA--ACAT-AA-AAACATA--AATTTTTT-AATGATTAAATTAG
** * * * *** * * * *
15312 AACAAACATAAAAACATAAA-TTTTTTAATGATT--AA-ATTAGATTAAAGTAGA-TAAAATTGC
111 ATTAAA-GT--AGA-TTAAAGTAGATTAA--ATTGCAAGA-TAGATAAAAATACATTGAAATT--
* * * * * * *
15372 AAGATAGATAAAAATAC--ATTGAAATTAGATAA-ATAAACATATTAATTTTTTGAAACATAAAA
167 -AGATAAATAAACATACTAATT---TTTTGA-AACATAAAAATA-CAA------CAAACAT-AAA
*** ** ** ** * * *
15434 ATACA-ACAAACATAAAAACA-TAAATT-TTTTAATGATTAAATTAGA
219 A-ACATA-AATTTTTTAATGATTAAATTAGATTAAAGATTAGATTAAA
* * * * * * * *
15479 TT-AAAG-TAGATTAAATTAGATT-AAATTGCAAGATAGATAAAAATAC--ATTGAAATTAGATA
1 TTGCAAGATAGATAAAAATACATTGAAATT---AGATAAATAAACATACTAATT---TTTTGA-A
* * *** ** ** *
15539 A-ATAAACATACTAATTTTTTGAAACATAAAAATACA-ACAAACATAAAAACATAAAATTTTTAA
59 ACATAAAAATAC-AA------CAAACAT-AAAA-ACATA-AATTTTTTAATGATTAAA---TT-A
* * * *
15602 TGATTAAATTAGATTAATGTTGATTAAATTGTAAGATAGATAAAAATACATTGAAATTAGATAAA
110 -GATTAAAGTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAA
15667 TAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGAT
174 TAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGAT
*
15732 TAAATTAGAATAAAG--TAGATTAAA
239 TAAATTAGATTAAAGATTAGATTAAA
* *
15756 TTGCAAGATAGATAAAAATATATTGAAATTAGATAAATATACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
15821 AATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATT-AA--AG
*
15885 ATTAAATTAGATTAAATTGCATGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAA
128 -------TAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAA
*
15950 TGTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTAATGATTAAATTAGATTAA
186 TTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAA--TTT--T--TT-AA-T-GATTAA
*
16015 AGTAGATTAAATTAGATTAAAGTAGATTAAA
242 ATTAGATT-AA--AGA-T----TAGATTAAA
16046 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
16111 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG--T--A---G
*
16176 ATTAAAGTAGATTAAATTGCAAGATAGATAAAAATATATTGAAATTAGATAAATAAACATACTAA
121 ATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAA
16241 TTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTA
186 TTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTA
16306 AAG--TAGATTAAA
251 AAGATTAGATTAAA
* * *
16318 TTGCAAGATACATAAAAATACATTGAAATTAGATAAATAAATATATTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
16383 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT--A--A-A-T----TAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
*
16438 ATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATAATAATTTTTTGAAA
131 ATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAA
16503 CATAAAAATACAACAAACATAAAAACATAAATTTTTTTAA-GATTAAATTAGATTAAAGTAGATT
196 CATAAAAATACAACAAACATAAAAACATAAA-TTTTTTAATGATTAAATTAGATT-AA--AGA-T
16567 AAAGTAGATTAAA
256 ----TAGATTAAA
*
16580 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACAAACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
16645 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAG-----A-TT-
16710 ATTAATGTAGATTAAATTGCAAGATAGATAAAAAATACATTGAAATTAGATAAATAAACATACTA
124 A--AA-GTAGATTAAATTGCAAGATAGAT-AAAAATACATTGAAATTAGATAAATAAACATACTA
* * *
16775 ATATTTTGAAACATAAAAATACAACAAAAATAAAAACATCAATTTTTTAATGATTAAATTAGATT
185 ATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT
16840 AAAGTAGATTAAAGTAGATTAAA
250 -AA--AGA-T----TAGATTAAA
* * *
16863 TTGTAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAATATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
16928 AATACAACAAACATAAAAACATAAATTTTTTAATGATT--A--A-A-T----TAGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
* *
16983 ATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACTTATTAATTTTTTGAAA
131 ATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAA
* *
17048 CATAAAAATACAAAAAACATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTAGATTT
196 CATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG----
17113 AATTAGATTAAA
254 -ATTAGATTAAA
* *
17125 TTGCAATATAGATAAAAATACATTGAAATTAGATAAATAAACATTCTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
17190 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAT
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
17255 ATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAA
131 ATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAA
17320 CATAAAAATACAACAAACATAAAAACATAAA-TTTTTAATGATTAAATTAGATTAAAG--TAGAT
196 CATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGATTAGAT
17382 TAAA
261 TAAA
*
17386 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTAAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
17451 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTTGATTAAAGTAGATTAAATTTG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG--T--A---G
* *
17516 ATTAAAGTAGATTAAATTGCAATATAGATAAAAATACATTGAAATTAGATAAATAAACATATTAA
121 ATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAA
*
17581 TTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTA
186 TTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT--A--A-A-T-
17646 AAGTAGATTAAATTAGATTAAATTAGATTAAA
244 ---TAGATT-AA--AG-----ATTAGATTAAA
17678 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
17743 AATACAACAAACATAAAAACAT-AA------AAT-CTT-AA-T-GATTAAATTAGATTAAAGTAG
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
*
17797 ATTAAATTGCAAGATAGATAAATATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAA
131 ATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAA
*
17862 CATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGAATAAATTAGATTAAATTTGATTA
196 CATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAA---G----
17927 ATGTAGATTAAA
254 AT-TAGATTAAA
*
17939 TTGCATGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
18004 AATACAACAAACATAAAAACATAATTTTTTTTAATGATTAAATTAGATTAAAGTATATTAAATTA
66 AATACAACAAACATAAAAACATAA-ATTTTTTAATGATTAAATTAGATTAAAG----------TA
*
18069 GATTAAAGTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTA
120 GATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTA
18134 ATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT
185 ATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT
18199 AAATTTGATTAAAGTAGATTAAA
250 AAA---GA-T----TAGATTAAA
*
18222 TTGCAAGATTGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACAT-AA
* *
18287 AAATACAACAATCATAAAAACATAATTTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
65 AAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATT-AA--AG-------TA
* *
18352 GATTAAAGTAGATTAAATTGCAAGATAAATAAAACTACATTGAAATTAGATAAATAAACATACTA
120 GATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTA
*
18417 ATTTTTTGAAACATAAAAATACAA-AAATCATAAAAACATAATTTTTTTAATGATTAAATTAGAT
185 ATTTTTTGAAACATAAAAATACAACAAA-CATAAAAACATAAATTTTTTAATGATTAAATTAGAT
18481 TAAATTAGATTAAAGTATATTAAA
249 T-AA--AGATT--AG---ATTAAA
18505 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
18570 AATACAACAAACATAAAAACATAAATTTTTTAATGATT
66 AATACAACAAACATAAAAACATAAATTTTTTAATGATT
18608 TGCAAGATAG
Statistics
Matches: 3419, Mismatches: 258, Indels: 542
0.81 0.06 0.13
Matches are distributed among these distances:
252 111 0.03
253 28 0.01
254 8 0.00
255 18 0.01
256 6 0.00
257 4 0.00
258 3 0.00
259 11 0.00
260 6 0.00
261 263 0.08
262 588 0.17
263 55 0.02
264 12 0.00
265 12 0.00
266 18 0.01
267 25 0.01
268 10 0.00
269 17 0.00
270 14 0.00
271 338 0.10
272 238 0.07
273 15 0.00
274 7 0.00
275 7 0.00
276 15 0.00
277 37 0.01
278 21 0.01
279 32 0.01
280 43 0.01
281 10 0.00
282 94 0.03
283 648 0.19
284 35 0.01
285 20 0.01
286 16 0.00
287 38 0.01
288 9 0.00
289 41 0.01
290 167 0.05
291 135 0.04
292 160 0.05
293 6 0.00
294 17 0.00
295 11 0.00
296 5 0.00
297 17 0.00
298 8 0.00
299 3 0.00
300 11 0.00
301 4 0.00
302 2 0.00
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.32
Consensus pattern (264 bp):
TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
AATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAAGTAG
ATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAA
CATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATTAAATTAGATTAAAGATTAGAT
TAAA
Found at i:14900 original size:10 final size:10
Alignment explanation
Indices: 14885--14953 Score: 120
Period size: 10 Copynumber: 6.9 Consensus size: 10
14875 TTTTTTTAAT
14885 GATTAAATTA
1 GATTAAATTA
14895 GATTAAATTA
1 GATTAAATTA
14905 GATTAAATTA
1 GATTAAATTA
*
14915 GATTAAAGTA
1 GATTAAATTA
14925 GATTAAATTA
1 GATTAAATTA
*
14935 GATTAAAGTA
1 GATTAAATTA
14945 GATTAAATT
1 GATTAAATT
14954 CCAAGATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 55 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:15045 original size:166 final size:164
Alignment explanation
Indices: 14749--15098 Score: 576
Period size: 166 Copynumber: 2.1 Consensus size: 164
14739 ATTTTTTAAT
* *
14749 GATTAAATTAGATTAAAGTAGATTAAAGTAGATTAAATTACAAGATAAATAAAAATACATTGAAA
1 GATTAAAGTAGATTAAATTAGATTAAAGTAGATTAAATTACAAGATAAATAAAAATACATTGAAA
* *
14814 TTAGATAAATAAACCTATTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAATTTT
66 TTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAA--TT
*
14879 TTTAATGATTAAATTAGATTAAATTAGATTAAATTA
129 TTTAATGATTAAATTAGATTAAAGTAGATTAAATTA
* *
14915 GATTAAAGTAGATTAAATTAGATTAAAGTAGATTAAATTCCAAGATAGATAAAAATACATTGAAA
1 GATTAAAGTAGATTAAATTAGATTAAAGTAGATTAAATTACAAGATAAATAAAAATACATTGAAA
* *
14980 TTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACTAAAAA-TTAAAAACATAAATTT
66 TTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACAT-AATTT
15044 TTAATGATTAAATTAGATTAAAGTAGATTAAATTA
130 TTAATGATTAAATTAGATTAAAGTAGATTAAATTA
*
15079 GATTAAAGTAGATTACATTA
1 GATTAAAGTAGATTAAATTA
15099 CAAGATAGAT
Statistics
Matches: 173, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
164 56 0.32
165 9 0.05
166 108 0.62
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (164 bp):
GATTAAAGTAGATTAAATTAGATTAAAGTAGATTAAATTACAAGATAAATAAAAATACATTGAAA
TTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAATTTT
TAATGATTAAATTAGATTAAAGTAGATTAAATTA
Found at i:15064 original size:10 final size:10
Alignment explanation
Indices: 15049--15098 Score: 73
Period size: 10 Copynumber: 5.0 Consensus size: 10
15039 AATTTTTAAT
15049 GATTAAATTA
1 GATTAAATTA
*
15059 GATTAAAGTA
1 GATTAAATTA
15069 GATTAAATTA
1 GATTAAATTA
*
15079 GATTAAAGTA
1 GATTAAATTA
*
15089 GATTACATTA
1 GATTAAATTA
15099 CAAGATAGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (10 bp):
GATTAAATTA
Found at i:15074 original size:20 final size:20
Alignment explanation
Indices: 15049--15098 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
15039 AATTTTTAAT
15049 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
15069 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
15089 GATTACATTA
1 GATTAAATTA
15099 CAAGATAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:15103 original size:144 final size:146
Alignment explanation
Indices: 14623--15369 Score: 1043
Period size: 146 Copynumber: 5.1 Consensus size: 146
14613 ATTTTTTAAT
* **
14623 GATTAAATTAGATTAAAGTTGATTAAATTGTAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTACAAGATAGATAAAAATACATTGAAATTAGATAAAT
* *
14688 AAACATACTAATTTTTCGAAATATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
14753 AAATTAGATT-AA--A
131 AAATTAGATTAAAGTA
*
14766 G-------TAGATTAAAGTAGATTAAATTACAAGATAAATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTACAAGATAGATAAAAATACATTGAAATTAGATAAAT
* * * *
14824 AAACCTATTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAATTTTTTTAATGATT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
*
14889 AAATTAGATTAAATTA
131 AAATTAGATTAAAGTA
*
14905 GATTAAATTAGATTAAAGTAGATTAAATTAGATTAAAGTAGATTAAATTCCAAGATAGATAAAAA
1 GATTAAATTAGATT-AA--AG-------TAGATT--A--A-ATT-AC----AAGATAGATAAAAA
*
14970 TACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACTAA-AAA-TTAAA
46 TACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATAC-AACAAACATAAA
15033 AACATAAA-TTTTTAATGATTAAATTAGATTAAAGTA
110 AACATAAATTTTTTAATGATTAAATTAGATTAAAGTA
*
15069 GATTAAATTAGATTAAAGTAGATTACATTACAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTACAAGATAGATAAAAATACATTGAAATTAGATAAAT
*
15134 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATAATT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
15199 AAATTAGATTAAAGTA
131 AAATTAGATTAAAGTA
* **
15215 GATTAAATTTGATTAAAGTAGATTAAATCGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTACAAGATAGATAAAAATACATTGAAATTAGATAAAT
15280 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
15345 AAATTAGATTAAAGTA
131 AAATTAGATTAAAGTA
*
15361 GATAAAATT
1 GATTAAATT
15370 GCAAGATAGA
Statistics
Matches: 543, Mismatches: 27, Indels: 65
0.86 0.04 0.10
Matches are distributed among these distances:
136 122 0.22
137 2 0.00
139 2 0.00
143 3 0.01
144 69 0.13
145 12 0.02
146 182 0.34
147 2 0.00
148 1 0.00
149 5 0.01
152 1 0.00
154 6 0.01
156 6 0.01
158 1 0.00
160 1 0.00
161 5 0.01
162 1 0.00
163 2 0.00
164 41 0.08
165 11 0.02
166 66 0.12
167 2 0.00
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.32
Consensus pattern (146 bp):
GATTAAATTAGATTAAAGTAGATTAAATTACAAGATAGATAAAAATACATTGAAATTAGATAAAT
AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
AAATTAGATTAAAGTA
Found at i:15163 original size:310 final size:302
Alignment explanation
Indices: 14623--15242 Score: 985
Period size: 310 Copynumber: 2.0 Consensus size: 302
14613 ATTTTTTAAT
* **
14623 GATTAAATTAGATTAAAGTTGATTAAATTGTAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTCCAAGATAGATAAAAATACATTGAAATTAGATAAAT
*
14688 AAACATACTAATTTTTCGAAATATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
66 AAACATACTAATTTTTCGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
14753 AAATTAGATTAAAGTAGATTAAAGTAGATTAAATTACAAGATAAATAAAAATACATTGAAATTAG
131 AAATTAGATTAAAGTAGATTAAAGTAGATTAAATTACAAGATAAATAAAAATACATTGAAATTAG
* * *
14818 ATAAATAAACCTATTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAATTTTTTTA
196 ATAAATAAACATACTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAAATTTTTTA
* *
14883 ATGATTAAATTAGATTAAATTAGATTAAATTAGATTAAAGTA
261 ATAATTAAATTAGATTAAAGTAGATTAAATTAGATTAAAGTA
14925 GATTAAATTAGATTAAAGTAGATTAAATTCCAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTCCAAGATAGATAAAAATACATTGAAATTAGATAAAT
* *
14990 AAACATACTAATTTTTTGAAACATAAAAATACTAA-AAA-TTAAAAACATAAA-TTTTTAATGAT
66 AAACATACTAATTTTTCGAAACATAAAAATAC-AACAAACATAAAAACATAAATTTTTTAATGAT
* *
15052 TAAATTAGATTAAAGTAGATTAAATTAGATTAAAGTAGATTACATTACAAGATAGATAAAAATAC
130 TAAATTAGATT-AA--AG-------TAGATTAAAGTAGATTAAATTACAAGATAAATAAAAATAC
*
15117 ATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACA
185 ATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACA
*
15182 TAAATTTTTTAATAATTAAATTAGATTAAAGTAGATTAAATTTGATTAAAGTA
250 TAAATTTTTTAATAATTAAATTAGATTAAAGTAGATTAAATTAGATTAAAGTA
15235 GATTAAAT
1 GATTAAAT
15243 CGCAAGATAG
Statistics
Matches: 292, Mismatches: 15, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
300 22 0.08
301 14 0.05
302 95 0.33
303 4 0.01
310 157 0.54
ACGTcount: A:0.53, C:0.05, G:0.08, T:0.33
Consensus pattern (302 bp):
GATTAAATTAGATTAAAGTAGATTAAATTCCAAGATAGATAAAAATACATTGAAATTAGATAAAT
AAACATACTAATTTTTCGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
AAATTAGATTAAAGTAGATTAAAGTAGATTAAATTACAAGATAAATAAAAATACATTGAAATTAG
ATAAATAAACATACTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAAATTTTTTA
ATAATTAAATTAGATTAAAGTAGATTAAATTAGATTAAAGTA
Found at i:15211 original size:10 final size:10
Alignment explanation
Indices: 15196--15242 Score: 67
Period size: 10 Copynumber: 4.7 Consensus size: 10
15186 TTTTTTAATA
15196 ATTAAATTAG
1 ATTAAATTAG
*
15206 ATTAAAGTAG
1 ATTAAATTAG
*
15216 ATTAAATTTG
1 ATTAAATTAG
*
15226 ATTAAAGTAG
1 ATTAAATTAG
15236 ATTAAAT
1 ATTAAAT
15243 CGCAAGATAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (10 bp):
ATTAAATTAG
Found at i:15221 original size:20 final size:20
Alignment explanation
Indices: 15196--15242 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
15186 TTTTTTAATA
15196 ATTAAATTAGATTAAAGTAG
1 ATTAAATTAGATTAAAGTAG
*
15216 ATTAAATTTGATTAAAGTAG
1 ATTAAATTAGATTAAAGTAG
15236 ATTAAAT
1 ATTAAAT
15243 CGCAAGATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (20 bp):
ATTAAATTAGATTAAAGTAG
Found at i:15436 original size:49 final size:48
Alignment explanation
Indices: 15379--15574 Score: 126
Period size: 49 Copynumber: 4.2 Consensus size: 48
15369 TGCAAGATAG
15379 ATAAAAATACATTGAAATTAGATAAATAAACATATTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATATTAATTTTTTGAAAC
* **
15428 ATAAAAATACA--ACAA--ACAT-AA-AAACATA--AATTTTTT-AATG
1 ATAAAAATACATTA-AATTAGATAAATAAACATATTAATTTTTTGAAAC
* * * * * * * **** * *
15468 ATTAAATTAGATTAAAGTAGATTAAAT-TAGAT-TAAATTGCAAGATAG
1 ATAAAAATACATTAAATTAGA-TAAATAAACATATTAATTTTTTGAAAC
*
15515 ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATATTAATTTTTTGAAAC
15564 ATAAAAATACA
1 ATAAAAATACA
15575 ACAAACATAA
Statistics
Matches: 104, Mismatches: 29, Indels: 28
0.65 0.18 0.17
Matches are distributed among these distances:
40 10 0.10
41 10 0.10
42 1 0.01
43 9 0.09
44 3 0.03
45 8 0.08
46 5 0.05
47 19 0.18
48 10 0.10
49 29 0.28
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.32
Consensus pattern (48 bp):
ATAAAAATACATTAAATTAGATAAATAAACATATTAATTTTTTGAAAC
Found at i:15482 original size:10 final size:10
Alignment explanation
Indices: 15467--15505 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
15457 ATTTTTTAAT
15467 GATTAAATTA
1 GATTAAATTA
*
15477 GATTAAAGTA
1 GATTAAATTA
15487 GATTAAATTA
1 GATTAAATTA
15497 GATTAAATT
1 GATTAAATT
15506 GCAAGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (10 bp):
GATTAAATTA
Found at i:15869 original size:10 final size:10
Alignment explanation
Indices: 15854--15902 Score: 89
Period size: 10 Copynumber: 4.9 Consensus size: 10
15844 AATTTTTAAT
15854 GATTAAATTA
1 GATTAAATTA
*
15864 GATTAAAGTA
1 GATTAAATTA
15874 GATTAAATTA
1 GATTAAATTA
15884 GATTAAATTA
1 GATTAAATTA
15894 GATTAAATT
1 GATTAAATT
15903 GCATGATAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:15882 original size:145 final size:146
Alignment explanation
Indices: 15729--16319 Score: 1096
Period size: 145 Copynumber: 4.1 Consensus size: 146
15719 ATTTTTTAAT
* *
15729 GATTAAATTAGAATAAAGTAGATTAAATTGCAAGATAGATAAAAATATATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
*
15794 ATACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAA-TTTTTAATGATT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
15858 AAATTAGATTAAAGTA
131 AAATTAGATTAAAGTA
* *
15874 GATTAAATTAGATTAAATTAGATTAAATTGCATGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
*
15939 AAACATACTAATGTTTTGAAACATAAAAATACAACAAACATAAAAACATAAA-TTTTTAATGATT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
16003 AAATTAGATTAAAGTA
131 AAATTAGATTAAAGTA
16019 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
16084 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
16149 AAATTAGATTAAAGTA
131 AAATTAGATTAAAGTA
* *
16165 GATTAAATTTGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATATATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
16230 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
16295 AAATTAGATTAAAGTA
131 AAATTAGATTAAAGTA
16311 GATTAAATT
1 GATTAAATT
16320 GCAAGATACA
Statistics
Matches: 434, Mismatches: 11, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
145 253 0.58
146 181 0.42
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.32
Consensus pattern (146 bp):
GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
AAATTAGATTAAAGTA
Found at i:16014 original size:10 final size:10
Alignment explanation
Indices: 15999--16047 Score: 80
Period size: 10 Copynumber: 4.9 Consensus size: 10
15989 AATTTTTAAT
15999 GATTAAATTA
1 GATTAAATTA
*
16009 GATTAAAGTA
1 GATTAAATTA
16019 GATTAAATTA
1 GATTAAATTA
*
16029 GATTAAAGTA
1 GATTAAATTA
16039 GATTAAATT
1 GATTAAATT
16048 GCAAGATAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (10 bp):
GATTAAATTA
Found at i:16024 original size:20 final size:20
Alignment explanation
Indices: 15999--16047 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
15989 AATTTTTAAT
15999 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
16019 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
16039 GATTAAATT
1 GATTAAATT
16048 GCAAGATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:16160 original size:10 final size:10
Alignment explanation
Indices: 16145--16193 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
16135 ATTTTTTAAT
16145 GATTAAATTA
1 GATTAAATTA
*
16155 GATTAAAGTA
1 GATTAAATTA
*
16165 GATTAAATTT
1 GATTAAATTA
*
16175 GATTAAAGTA
1 GATTAAATTA
16185 GATTAAATT
1 GATTAAATT
16194 GCAAGATAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:16170 original size:20 final size:20
Alignment explanation
Indices: 16145--16193 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
16135 ATTTTTTAAT
16145 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
16165 GATTAAATTTGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
16185 GATTAAATT
1 GATTAAATT
16194 GCAAGATAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:16432 original size:10 final size:10
Alignment explanation
Indices: 16417--16445 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
16407 ATTTTTTAAT
16417 GATTAAATTA
1 GATTAAATTA
16427 GATTAAATTA
1 GATTAAATTA
16437 GATTAAATT
1 GATTAAATT
16446 GCAAGATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:16557 original size:10 final size:10
Alignment explanation
Indices: 16542--16579 Score: 67
Period size: 10 Copynumber: 3.8 Consensus size: 10
16532 AATTTTTTTA
*
16542 AGATTAAATT
1 AGATTAAAGT
16552 AGATTAAAGT
1 AGATTAAAGT
16562 AGATTAAAGT
1 AGATTAAAGT
16572 AGATTAAA
1 AGATTAAA
16580 TTGCAAGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.32
Consensus pattern (10 bp):
AGATTAAAGT
Found at i:16694 original size:10 final size:10
Alignment explanation
Indices: 16679--16727 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
16669 ATTTTTTAAT
16679 GATTAAATTA
1 GATTAAATTA
*
16689 GATTAAAGTA
1 GATTAAATTA
*
16699 GATTAAATTT
1 GATTAAATTA
16709 GATT-AATGTA
1 GATTAAAT-TA
16719 GATTAAATT
1 GATTAAATT
16728 GCAAGATAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 3 0.09
10 27 0.82
11 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:16704 original size:20 final size:20
Alignment explanation
Indices: 16679--16727 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
16669 ATTTTTTAAT
16679 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
* *
16699 GATTAAATTTGATTAATGTA
1 GATTAAATTAGATTAAAGTA
16719 GATTAAATT
1 GATTAAATT
16728 GCAAGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:16841 original size:10 final size:10
Alignment explanation
Indices: 16826--16862 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
16816 ATTTTTTAAT
*
16826 GATTAAATTA
1 GATTAAAGTA
16836 GATTAAAGTA
1 GATTAAAGTA
16846 GATTAAAGTA
1 GATTAAAGTA
16856 GATTAAA
1 GATTAAA
16863 TTGTAAGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.16, T:0.32
Consensus pattern (10 bp):
GATTAAAGTA
Found at i:16927 original size:49 final size:48
Alignment explanation
Indices: 16740--16933 Score: 126
Period size: 49 Copynumber: 4.2 Consensus size: 48
16730 AAGATAGATA
* *
16740 AAAAATACATTGAAATTAGATAAATAAACATACTAATATTTTGAAACAT
1 AAAAATACATTGAAATTAGATAAATAAACATAC-AATTTTTTGAAATAT
**
16789 AAAAATACA-ACAAA--A-AT-AA-AAACAT-CAATTTTTT--AATGAT
1 AAAAATACATTGAAATTAGATAAATAAACATACAATTTTTTGAAAT-AT
* * * * * * * **
16829 TAAATTAGATT-AAAGTAGATTAAAGTAGA-TTA-AATTGTAAGATAA-AT
1 AAAAATACATTGAAATTAGA-TAAA-TAAACATACAATTTTTTGA-AATAT
16876 AAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAATAT
1 AAAAATACATTGAAATTAGATAAATAAACATAC-AATTTTTTGAAATAT
16925 AAAAATACA
1 AAAAATACA
16934 ACAAACATAA
Statistics
Matches: 105, Mismatches: 22, Indels: 36
0.64 0.13 0.22
Matches are distributed among these distances:
39 2 0.02
40 11 0.10
41 7 0.07
42 2 0.02
43 7 0.07
44 3 0.03
45 4 0.04
46 10 0.10
47 18 0.17
48 12 0.11
49 29 0.28
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (48 bp):
AAAAATACATTGAAATTAGATAAATAAACATACAATTTTTTGAAATAT
Found at i:16974 original size:116 final size:116
Alignment explanation
Indices: 16846--17104 Score: 356
Period size: 126 Copynumber: 2.1 Consensus size: 116
16836 GATTAAAGTA
* *
16846 GATTAAAGTAGATTAAATTGTAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTA
1 GATTAAATTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTA
* *
16911 ATTTTTTGAAATATAAAAATACAACAAACATAAAAACATAAATTTTTTAAT
66 ATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAAATTTTTTAAT
*
16962 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATT--A--A-A-T----TAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAAT
* * *
17027 AAACTTATTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAATTTTTTTAAT
56 AAACATACTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAAATTTTTTAAT
17088 GATTAAATTAGATTAAA
1 GATTAAATTAGATTAAA
17105 GTAGATTTAA
Statistics
Matches: 125, Mismatches: 8, Indels: 20
0.82 0.05 0.13
Matches are distributed among these distances:
116 13 0.10
118 1 0.01
120 2 0.02
121 2 0.02
122 1 0.01
124 1 0.01
126 105 0.84
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (116 bp):
GATTAAATTAGATTAAATTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTA
ATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAAATTTTTTAAT
Found at i:17103 original size:10 final size:10
Alignment explanation
Indices: 17088--17126 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
17078 TTTTTTTAAT
17088 GATTAAATTA
1 GATTAAATTA
*
17098 GATTAAAGTA
1 GATTAAATTA
*
17108 GATTTAATTA
1 GATTAAATTA
17118 GATTAAATT
1 GATTAAATT
17127 GCAATATAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:17157 original size:21 final size:22
Alignment explanation
Indices: 17124--17169 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
17114 ATTAGATTAA
*
17124 ATTGCAATATAGATAAA-AATAC
1 ATTGAAATATAGATAAATAA-AC
17146 ATTGAAAT-TAGATAAATAAAC
1 ATTGAAATATAGATAAATAAAC
17167 ATT
1 ATT
17170 CTAATTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.54, C:0.07, G:0.09, T:0.30
Consensus pattern (22 bp):
ATTGAAATATAGATAAATAAAC
Found at i:17175 original size:21 final size:21
Alignment explanation
Indices: 17133--17175 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
17123 AATTGCAATA
*
17133 TAGATAAAAATACATTGAAAT
1 TAGATAAAAATACATTCAAAT
*
17154 TAGATAAATAA-ACATTCTAAT
1 TAGATAAA-AATACATTCAAAT
17175 T
1 T
17176 TTTTGAAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (21 bp):
TAGATAAAAATACATTCAAAT
Found at i:17193 original size:49 final size:47
Alignment explanation
Indices: 17000--17331 Score: 119
Period size: 49 Copynumber: 7.2 Consensus size: 47
16990 TGCAAGATAG
17000 ATAAAAATACATTGAAATTAGATAAATAAAC-TTATTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATTA--AATTTTTTGAAAC
* * * **
17049 ATAAAAATACA--AAA-AACAT-AA-AAACA-T-AATTTTTTTAATG
1 ATAAAAATACATTAAATTAGATAAATAAACATTAAATTTTTTGAAAC
* * * * * * * *** * *
17089 ATTAAATTAGATTAAAGTAGATTTAAT-TAGATTAAATTGCAAT-ATAG
1 ATAAAAATACATTAAATTAGA-TAAATAAACATTAAATT-TTTTGAAAC
*
17136 ATAAAAATACATTGAAATTAGATAAATAAACATTCTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATT-AAATTTTTTGAAAC
* **
17185 ATAAAAATACA--ACAA--ACAT-AA-AAACA-TAAATTTTTT-AATG
1 ATAAAAATACATTA-AATTAGATAAATAAACATTAAATTTTTTGAAAC
* * * * * * **** * *
17225 ATTAAATTAGATTAAAGTAGATTAAAT-TATATTAAATTGCAAGATAG
1 ATAAAAATACATTAAATTAGA-TAAATAAACATTAAATTTTTTGAAAC
17272 ATAAAAATACATTGAAATTAGATAAATAAACA-TACTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATTA--AATTTTTTGAAAC
17321 ATAAAAATACA
1 ATAAAAATACA
17332 ACAAACATAA
Statistics
Matches: 197, Mismatches: 58, Indels: 56
0.63 0.19 0.18
Matches are distributed among these distances:
40 28 0.14
41 10 0.05
42 5 0.03
43 14 0.07
44 6 0.03
45 14 0.07
46 11 0.06
47 41 0.21
48 22 0.11
49 46 0.23
ACGTcount: A:0.53, C:0.06, G:0.07, T:0.33
Consensus pattern (47 bp):
ATAAAAATACATTAAATTAGATAAATAAACATTAAATTTTTTGAAAC
Found at i:17239 original size:10 final size:10
Alignment explanation
Indices: 17224--17262 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
17214 ATTTTTTAAT
17224 GATTAAATTA
1 GATTAAATTA
*
17234 GATTAAAGTA
1 GATTAAATTA
17244 GATTAAATTA
1 GATTAAATTA
*
17254 TATTAAATT
1 GATTAAATT
17263 GCAAGATAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:17499 original size:10 final size:10
Alignment explanation
Indices: 17484--17533 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
17474 AATTTTTTAA
17484 TGATTAAATT
1 TGATTAAATT
*
17494 TGATTAAAGT
1 TGATTAAATT
*
17504 AGATTAAATT
1 TGATTAAATT
*
17514 TGATTAAAGT
1 TGATTAAATT
*
17524 AGATTAAATT
1 TGATTAAATT
17534 GCAATATAGA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (10 bp):
TGATTAAATT
Found at i:17510 original size:20 final size:20
Alignment explanation
Indices: 17485--17533 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
17475 ATTTTTTAAT
17485 GATTAAATTTGATTAAAGTA
1 GATTAAATTTGATTAAAGTA
17505 GATTAAATTTGATTAAAGTA
1 GATTAAATTTGATTAAAGTA
17525 GATTAAATT
1 GATTAAATT
17534 GCAATATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (20 bp):
GATTAAATTTGATTAAAGTA
Found at i:17519 original size:146 final size:146
Alignment explanation
Indices: 17359--17804 Score: 804
Period size: 146 Copynumber: 3.1 Consensus size: 146
17349 AATTTTTAAT
17359 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
*
17424 AAACATACTAATTTTTTAAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
*
17489 AAATTTGATTAAAGTA
131 AAATTAGATTAAAGTA
* *
17505 GATTAAATTTGATTAAAGTAGATTAAATTGCAATATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
* *
17570 AAACATATTAATTTTTTGAAACATAAAAATACAAAAAACATAAAAACATAAATTTTTTAATGATT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
17635 AAATTAGATTAAAGTA
131 AAATTAGATTAAAGTA
*
17651 GATTAAATTAGATTAAATTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
1 GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
* *
17716 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAA-ATCTTAATGATT
66 AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
17780 AAATTAGATTAAAGTA
131 AAATTAGATTAAAGTA
17796 GATTAAATT
1 GATTAAATT
17805 GCAAGATAGA
Statistics
Matches: 287, Mismatches: 13, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
145 35 0.12
146 252 0.88
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.32
Consensus pattern (146 bp):
GATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAAT
AAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGATT
AAATTAGATTAAAGTA
Found at i:17646 original size:10 final size:10
Alignment explanation
Indices: 17631--17679 Score: 89
Period size: 10 Copynumber: 4.9 Consensus size: 10
17621 ATTTTTTAAT
17631 GATTAAATTA
1 GATTAAATTA
*
17641 GATTAAAGTA
1 GATTAAATTA
17651 GATTAAATTA
1 GATTAAATTA
17661 GATTAAATTA
1 GATTAAATTA
17671 GATTAAATT
1 GATTAAATT
17680 GCAAGATAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:17853 original size:21 final size:21
Alignment explanation
Indices: 17811--17853 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
17801 AATTGCAAGA
* **
17811 TAGATAAATATACATTGAAAT
1 TAGATAAATAAACATACAAAT
*
17832 TAGATAAATAAACATACTAAT
1 TAGATAAATAAACATACAAAT
17853 T
1 T
17854 TTTTGAAACA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (21 bp):
TAGATAAATAAACATACAAAT
Found at i:17873 original size:49 final size:47
Alignment explanation
Indices: 17814--18823 Score: 145
Period size: 49 Copynumber: 21.2 Consensus size: 47
17804 TGCAAGATAG
*
17814 ATAAATATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATA-TAATTTTTTGAAAC
*
17863 ATAAAAATACA--ACAA--ACAT-AA-AAACATA-AATTTTTT-AATGA-
1 ATAAAAATACATTA-AATTAGATAAATAAACATATAATTTTTTGAA--AC
* * * * ** * *** * *
17904 AT-AAATTAGATTAAATTTGATTAATGTAGAT-TAAATTGCATGATAG
1 ATAAAAATACATTAAATTAGATAAATAAACATAT-AATTTTTTGAAAC
17950 ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATA-TAATTTTTTGAAAC
* **
17999 ATAAAAATACA--ACAA--ACAT-AA-AAACATAATTTTTTTTAATGATTAA-
1 ATAAAAATACATTA-AATTAGATAAATAAACAT-ATAATTTTT--TGA--AAC
* * * ****
18045 ATTAGATTAAAGTATATTAAATTAGATTAAAGTAGA-TTA-AATTGCAAGATAA-
1 A-TA-A--AAA-TACATTAAATTAGA-TAAA-TAAACATATAATTTTTTGA-AAC
18097 ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATA-TAATTTTTTGAAAC
* **
18146 ATAAAAATACA--ACAA--ACAT-AA-AAACATA-AATTTTTT-AATG
1 ATAAAAATACATTA-AATTAGATAAATAAACATATAATTTTTTGAAAC
* * * * * * **** ***
18186 ATTAAATTAGATTAAATTTGATTAAAGTAGA-TTA-AATTGCAAGATTG
1 ATAAAAATACATTAAATTAGA-TAAA-TAAACATATAATTTTTTGAAAC
18233 ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATA-TAATTTTTTGAAAC
* * **
18282 ATAAAAAATACA--ACAA-T-CAT-AA-AAAC--ATAATTTTTTTAATG
1 AT-AAAAATACATTA-AATTAGATAAATAAACATATAATTTTTTGAAAC
* * * * ** * ** *
18323 ATTAAATTAGATTAAAGTAGATTAAATTAGATTAAAGTAGATTAAATTGCAAGATAA
1 ATAAAAATACATTAAATTAGA-TAAA-TA-AACATA-TA-ATT-TTTTG--A-A-AC
*
18380 ATAAAACTACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATA-TAATTTTTTGAAAC
* * * **
18429 ATAAAAATACA--AAAAT-CAT-AA-AAAC--ATAATTTTTTTAATG
1 ATAAAAATACATTAAATTAGATAAATAAACATATAATTTTTTGAAAC
* * * * * **** * *
18469 ATTAAATTAGATTAAATTAGATTAAAGTATA-TTA-AATTGCAAGATAG
1 ATAAAAATACATTAAATTAGA-TAAA-TAAACATATAATTTTTTGAAAC
18516 ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATA-TAATTTTTTGAAAC
** * * ** * ** *
18565 ATAAAAATACAACAAACATA-AAAACATAAATTTTTTAATGATTTGCAAGATAG
1 ATAAAAATACATTAAA-TTAGATAA-ATAAA-CATATAATTTTTTG--A-A-AC
*
18618 ATAAAAATACATTGAAATTTGATAAATAAACATACTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATA-TAATTTTTTGAAAC
* **
18667 ATAAAAATACA--ACAA--ACATAAA-AAA-ATA-AATTTTTT-AATG
1 ATAAAAATACATTA-AATTAGATAAATAAACATATAATTTTTTGAAAC
* * * * ** * ** *
18707 ATTAAATTAGATTAAAGTAGATTAAATTATATTAAAGTAGATTAAATTGCAAGATAG
1 ATAAAAATACATTAAATTAGA-TAAA-TA-AACATA-TA-ATT-TTTTG--A-A-AC
18764 ATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAAC
1 ATAAAAATACATT-AAATTAGATAAATAAACATA-TAATTTTTTGAAAC
18813 ATAAAAATACA
1 ATAAAAATACA
18824 ACAAACATAA
Statistics
Matches: 668, Mismatches: 174, Indels: 238
0.62 0.16 0.22
Matches are distributed among these distances:
40 53 0.08
41 48 0.07
42 11 0.02
43 40 0.06
44 25 0.04
45 31 0.05
46 34 0.05
47 81 0.12
48 55 0.08
49 122 0.18
50 20 0.03
51 14 0.02
52 13 0.02
53 37 0.06
54 14 0.02
55 15 0.02
56 9 0.01
57 30 0.04
58 16 0.02
ACGTcount: A:0.53, C:0.07, G:0.08, T:0.33
Consensus pattern (47 bp):
ATAAAAATACATTAAATTAGATAAATAAACATATAATTTTTTGAAAC
Found at i:18052 original size:10 final size:10
Alignment explanation
Indices: 18039--18087 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
18029 TTTTTTTAAT
18039 GATTAAATTA
1 GATTAAATTA
*
18049 GATTAAAGTA
1 GATTAAATTA
*
18059 TATTAAATTA
1 GATTAAATTA
*
18069 GATTAAAGTA
1 GATTAAATTA
18079 GATTAAATT
1 GATTAAATT
18088 GCAAGATAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:18065 original size:20 final size:20
Alignment explanation
Indices: 18039--18087 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
18029 TTTTTTTAAT
18039 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
18059 TATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
18079 GATTAAATT
1 GATTAAATT
18088 GCAAGATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:18200 original size:10 final size:10
Alignment explanation
Indices: 18185--18223 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
18175 ATTTTTTAAT
18185 GATTAAATTA
1 GATTAAATTA
*
18195 GATTAAATTT
1 GATTAAATTA
*
18205 GATTAAAGTA
1 GATTAAATTA
18215 GATTAAATT
1 GATTAAATT
18224 GCAAGATTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:18209 original size:20 final size:20
Alignment explanation
Indices: 18184--18223 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
18174 AATTTTTTAA
*
18184 TGATTAAATTAGATTAAATT
1 TGATTAAAGTAGATTAAATT
18204 TGATTAAAGTAGATTAAATT
1 TGATTAAAGTAGATTAAATT
18224 GCAAGATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (20 bp):
TGATTAAAGTAGATTAAATT
Found at i:18337 original size:10 final size:10
Alignment explanation
Indices: 18322--18370 Score: 80
Period size: 10 Copynumber: 4.9 Consensus size: 10
18312 TTTTTTTAAT
18322 GATTAAATTA
1 GATTAAATTA
*
18332 GATTAAAGTA
1 GATTAAATTA
18342 GATTAAATTA
1 GATTAAATTA
*
18352 GATTAAAGTA
1 GATTAAATTA
18362 GATTAAATT
1 GATTAAATT
18371 GCAAGATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (10 bp):
GATTAAATTA
Found at i:18347 original size:20 final size:20
Alignment explanation
Indices: 18322--18370 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
18312 TTTTTTTAAT
18322 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
18342 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
18362 GATTAAATT
1 GATTAAATT
18371 GCAAGATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:18483 original size:10 final size:10
Alignment explanation
Indices: 18468--18506 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
18458 TTTTTTTAAT
18468 GATTAAATTA
1 GATTAAATTA
18478 GATTAAATTA
1 GATTAAATTA
*
18488 GATTAAAGTA
1 GATTAAATTA
*
18498 TATTAAATT
1 GATTAAATT
18507 GCAAGATAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (10 bp):
GATTAAATTA
Found at i:18617 original size:102 final size:102
Alignment explanation
Indices: 18505--18709 Score: 392
Period size: 102 Copynumber: 2.0 Consensus size: 102
18495 GTATATTAAA
18505 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
18570 AATACAACAAACATAAAAACATAAATTTTTTAATGAT
66 AATACAACAAACATAAAAAAATAAATTTTTTAATGAT
*
18607 TTGCAAGATAGATAAAAATACATTGAAATTTGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
18672 AATACAACAAACATAAAAAAATAAATTTTTTAATGAT
66 AATACAACAAACATAAAAAAATAAATTTTTTAATGAT
18709 T
1 T
18710 AAATTAGATT
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 101 1.00
ACGTcount: A:0.54, C:0.08, G:0.07, T:0.31
Consensus pattern (102 bp):
TTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
AATACAACAAACATAAAAAAATAAATTTTTTAATGAT
Found at i:18644 original size:238 final size:245
Alignment explanation
Indices: 18369--18836 Score: 781
Period size: 248 Copynumber: 1.9 Consensus size: 245
18359 GTAGATTAAA
*
18369 TTGCAAGATAAATAAAACTACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
* *
18434 AATACAA-AAATCATAAAAACAT-AA-TTTT-T-TT-AA-T-GATTAAATTAGATTAAATTAGAT
66 AATACAACAAA-CATAAAAAAATAAATTTTTATATTAAATTAGATTAAAGTAGATTAAATTAGAT
*
18491 TAAAGTATATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATT
130 TAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATT
18556 TTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGAT
195 TTTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGAT
* *
18607 TTGCAAGATAGATAAAAATACATTGAAATTTGATAAATAAACATACTAATTTTTTGAAACATAAA
1 TTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
*
18672 AATACAACAAACATAAAAAAATAAATTTTTTAATGATTAAATTAGATTAAAGTAGATTAAATTAT
66 AATACAACAAACATAAAAAAATAAA-TTTTT-AT-ATTAAATTAGATTAAAGTAGATTAAATTAG
18737 ATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAA
128 ATTAAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAA
18802 TTTTTTGAAACATAAAAATACAACAAACATAAAAA
193 TTTTTTGAAACATAAAAATACAACAAACATAAAAA
18837 AATAGAAAAT
Statistics
Matches: 212, Mismatches: 7, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
238 79 0.37
239 5 0.02
241 4 0.02
243 1 0.00
245 2 0.01
246 2 0.01
247 1 0.00
248 118 0.56
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.31
Consensus pattern (245 bp):
TTGCAAGATAAATAAAAATACATTGAAATTAGATAAATAAACATACTAATTTTTTGAAACATAAA
AATACAACAAACATAAAAAAATAAATTTTTATATTAAATTAGATTAAAGTAGATTAAATTAGATT
AAAGTAGATTAAATTGCAAGATAGATAAAAATACATTGAAATTAGATAAATAAACATACTAATTT
TTTGAAACATAAAAATACAACAAACATAAAAACATAAATTTTTTAATGAT
Found at i:18697 original size:53 final size:53
Alignment explanation
Indices: 18537--18697 Score: 122
Period size: 53 Copynumber: 3.1 Consensus size: 53
18527 TTGAAATTAG
*
18537 ATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAC
1 ATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAA
* ** ** * * * ***
18590 ATAAAT----TTTTTAATGATTTGCAAGAT--AGATA-AA-AATACATTGAAATTTG
1 ATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAA-ACA-T-AAA-AAA
18639 ATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAA
1 ATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAA
18692 ATAAAT
1 ATAAAT
18698 TTTTTAATGA
Statistics
Matches: 74, Mismatches: 22, Indels: 24
0.62 0.18 0.20
Matches are distributed among these distances:
45 2 0.03
46 5 0.07
47 5 0.07
48 3 0.04
49 19 0.26
53 25 0.34
54 3 0.04
55 5 0.07
56 5 0.07
57 2 0.03
ACGTcount: A:0.57, C:0.09, G:0.05, T:0.29
Consensus pattern (53 bp):
ATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAAA
Found at i:18721 original size:10 final size:10
Alignment explanation
Indices: 18706--18754 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
18696 ATTTTTTAAT
18706 GATTAAATTA
1 GATTAAATTA
*
18716 GATTAAAGTA
1 GATTAAATTA
18726 GATTAAATTA
1 GATTAAATTA
* *
18736 TATTAAAGTA
1 GATTAAATTA
18746 GATTAAATT
1 GATTAAATT
18755 GCAAGATAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (10 bp):
GATTAAATTA
Found at i:18729 original size:20 final size:20
Alignment explanation
Indices: 18706--18754 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
18696 ATTTTTTAAT
18706 GATTAAATTAGATTAAAGTA
1 GATTAAATTAGATTAAAGTA
*
18726 GATTAAATTATATTAAAGTA
1 GATTAAATTAGATTAAAGTA
18746 GATTAAATT
1 GATTAAATT
18755 GCAAGATAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (20 bp):
GATTAAATTAGATTAAAGTA
Found at i:23021 original size:22 final size:21
Alignment explanation
Indices: 22968--23022 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
22958 ATTGATAGTG
*
22968 TTATAATTATTTAATAAAATA
1 TTATTATTATTTAATAAAATA
*
22989 TTATATTTTATTTAATAACGAAT-
1 TTAT-TATTATTTAATAA--AATA
23012 TTATTATTATT
1 TTATTATTATT
23023 AAACGGTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 4 0.14
22 17 0.61
23 4 0.14
24 3 0.11
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
TTATTATTATTTAATAAAATA
Found at i:25089 original size:24 final size:25
Alignment explanation
Indices: 25041--25089 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
25031 AACATGTCTC
* *
25041 TAAATATCCAAAATAGCATAAAAAA
1 TAAACATCCAAAATAACATAAAAAA
25066 TAAACATCCAAAA-AACATAAAAAA
1 TAAACATCCAAAATAACATAAAAAA
25090 CCATCAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.67, C:0.14, G:0.02, T:0.16
Consensus pattern (25 bp):
TAAACATCCAAAATAACATAAAAAA
Found at i:26385 original size:138 final size:138
Alignment explanation
Indices: 26217--26470 Score: 336
Period size: 138 Copynumber: 1.8 Consensus size: 138
26207 TTAAAAATGT
* *
26217 AGGCTCTAATATTAACTCTAATTAAATTTAACCAATTATCGAATCGAATAATTAAAATGGAACCT
1 AGGCTCTAATATTAACTCTAAGTAAATTTAACCAATTATCGAATCAAATAATTAAAATGGAACCT
* * *
26282 CGAG-AATAAGCGAGGACCAAATT-AAGAATTCTCCTAAATTAAAGGACTAAATGTGAAATTAGA
66 CGAGCAA-AAGCGAGGACCAAATTAAAAAATTCACCT-AATTAAAGAACTAAATGTGAAATTAGA
26345 CCTAAGATAG
129 CCTAAGATAG
* *** * *
26355 AGGCTCTATTAATTAAC-CT-AGTAAATTTTAATTGATTATTGAATCAAATAATTAAAATGGAAT
1 AGGCTCTAAT-ATTAACTCTAAGTAAA-TTTAACCAATTATCGAATCAAATAATTAAAATGGAAC
*
26418 CTCGAGCAAAAGCGGGGACCAAATTAAAAAATTCACCTAATTAAAGAACTAAA
64 CTCGAGCAAAAGCGAGGACCAAATTAAAAAATTCACCTAATTAAAGAACTAAA
26471 CCTAAAATCT
Statistics
Matches: 100, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
137 5 0.05
138 77 0.77
139 18 0.18
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.28
Consensus pattern (138 bp):
AGGCTCTAATATTAACTCTAAGTAAATTTAACCAATTATCGAATCAAATAATTAAAATGGAACCT
CGAGCAAAAGCGAGGACCAAATTAAAAAATTCACCTAATTAAAGAACTAAATGTGAAATTAGACC
TAAGATAG
Found at i:27722 original size:29 final size:29
Alignment explanation
Indices: 27690--27751 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
27680 AAAAGGCACG
*
27690 CCCCCTGCCCCACGCTATATGTTTAATTT
1 CCCCCTGCCCCACGCTATATGTTTAATTA
**
27719 CCCCCTGCCCCGTGCTATATGTTTAATTA
1 CCCCCTGCCCCACGCTATATGTTTAATTA
27748 CCCC
1 CCCC
27752 TATACCCCGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.16, C:0.40, G:0.11, T:0.32
Consensus pattern (29 bp):
CCCCCTGCCCCACGCTATATGTTTAATTA
Found at i:27859 original size:10 final size:10
Alignment explanation
Indices: 27820--27869 Score: 55
Period size: 10 Copynumber: 5.0 Consensus size: 10
27810 TTCATCACAC
27820 CAAATTCTCT
1 CAAATTCTCT
*
27830 CAATTTCTCT
1 CAAATTCTCT
*
27840 CAACTTCTCT
1 CAAATTCTCT
*
27850 CAAATACTCT
1 CAAATTCTCT
* *
27860 TATATTCTCT
1 CAAATTCTCT
27870 GTTTAAGGTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.44
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:27933 original size:23 final size:22
Alignment explanation
Indices: 27894--27938 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
27884 TTATTATATT
*
27894 TTTAATATTTTGTATTTAATTTA
1 TTTAATATTTTGAATTT-ATTTA
27917 TTTAAGTATTTT-AATTTATTTA
1 TTTAA-TATTTTGAATTTATTTA
27939 ATATTTTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 9 0.45
24 6 0.30
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.64
Consensus pattern (22 bp):
TTTAATATTTTGAATTTATTTA
Found at i:27945 original size:17 final size:18
Alignment explanation
Indices: 27908--27946 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
27898 ATATTTTGTA
27908 TTTAATTTATTTAAGTAT
1 TTTAATTTATTTAAGTAT
27926 TTTAATTTATTTAA-TAT
1 TTTAATTTATTTAAGTAT
27943 TTTA
1 TTTA
27947 CTTCTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTAATTTATTTAAGTAT
Found at i:37118 original size:3 final size:3
Alignment explanation
Indices: 37110--37155 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
37100 GGACCCCTAA
37110 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
37156 TTAGTAACAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37307 original size:35 final size:35
Alignment explanation
Indices: 37235--37324 Score: 105
Period size: 35 Copynumber: 2.6 Consensus size: 35
37225 ACTATATAAC
*
37235 ATATATTATA-TTTTCAAAAACCATTTTAAAAACT
1 ATATATTATATTTTTCAAAAACCATTTCAAAAACT
*
37269 ATATATTATATGTTTTCAAAAA-TATTTCAAAAACT
1 ATATATTATAT-TTTTCAAAAACCATTTCAAAAACT
*
37304 ATAT-TAAATATATTTTCAAAA
1 ATATAT-TATAT-TTTTCAAAA
37325 CTATATATTA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
34 11 0.22
35 28 0.57
36 10 0.20
ACGTcount: A:0.48, C:0.09, G:0.01, T:0.42
Consensus pattern (35 bp):
ATATATTATATTTTTCAAAAACCATTTCAAAAACT
Found at i:37337 original size:23 final size:23
Alignment explanation
Indices: 37293--37347 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
37283 TTCAAAAATA
37293 TTTCAAAAACTATATTAAATATAT
1 TTTC-AAAACTATATTAAATATAT
* *
37317 TTTCAAAACTATA-TATTATATGT
1 TTTCAAAACTATATTA-AATATAT
37340 TTTCAAAA
1 TTTCAAAA
37348 TGTTTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 2 0.07
23 22 0.79
24 4 0.14
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.44
Consensus pattern (23 bp):
TTTCAAAACTATATTAAATATAT
Found at i:37369 original size:39 final size:39
Alignment explanation
Indices: 37326--37486 Score: 204
Period size: 39 Copynumber: 4.2 Consensus size: 39
37316 TTTTCAAAAC
* **
37326 TATATAT-TATATGTTTTCAAAATGTTTTTTTTAAAACTA
1 TATATATATATATATTTTCAAAA-AATTTTTTTAAAACTA
* *
37365 TATAT-TATATATATTTTCAAAAAATGTATTTAAAACTA
1 TATATATATATATATTTTCAAAAAATTTTTTTAAAACTA
*
37403 TAT-TATATATATATATTCAAAAAATGTTTTTTAAAACTA
1 TATATATATATATATTTTCAAAAAAT-TTTTTTAAAACTA
* *
37442 TATAT-TATATATATTTTCAAAAAATATTTTCAAAACTA
1 TATATATATATATATTTTCAAAAAATTTTTTTAAAACTA
37480 TATATAT
1 TATATAT
37487 TTTCAAAAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
37 1 0.01
38 51 0.48
39 53 0.50
40 1 0.01
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (39 bp):
TATATATATATATATTTTCAAAAAATTTTTTTAAAACTA
Found at i:37422 original size:77 final size:76
Alignment explanation
Indices: 37313--37561 Score: 297
Period size: 77 Copynumber: 3.4 Consensus size: 76
37303 TATATTAAAT
* * ** *
37313 ATATTTTCAAAACTATATAT-TATATGTTTTCAAAATGTTTTTTTTAAAACTATATATTATATAT
1 ATATTTTCAAAACTATATATATATATATATTCAAAAAATGTTTTTTAAAACTATATATTATATAT
37377 ATTTTCAAAAA
66 ATTTTCAAAAA
*
37388 ATGTATTT-AAAACTATATTATATATATATATTCAAAAAATGTTTTTTAAAACTATATATTATAT
1 ATAT-TTTCAAAACTATA-TATATATATATATTCAAAAAATGTTTTTTAAAACTATATATTATAT
37452 ATATTTTCAAAAA
64 ATATTTTCAAAAA
*
37465 ATATTTTCAAAAC----TATATATAT-T-TTC-AAAAATG-TTTTCAAAACTATATACTATATAT
1 ATATTTTCAAAACTATATATATATATATATTCAAAAAATGTTTTTTAAAACTATATA-T-TATAT
37522 ATATTTTC-AAAA
64 ATATTTTCAAAAA
*
37534 ATAATTCTCAAAACTATATAT-TATATAT
1 AT-ATTTTCAAAACTATATATATATATAT
37562 GCTATATGTA
Statistics
Matches: 153, Mismatches: 9, Indels: 25
0.82 0.05 0.13
Matches are distributed among these distances:
68 15 0.10
69 14 0.09
70 26 0.17
71 1 0.01
72 9 0.06
73 5 0.03
74 4 0.03
75 12 0.08
76 9 0.06
77 58 0.38
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.46
Consensus pattern (76 bp):
ATATTTTCAAAACTATATATATATATATATTCAAAAAATGTTTTTTAAAACTATATATTATATAT
ATTTTCAAAAA
Found at i:37470 original size:13 final size:13
Alignment explanation
Indices: 37452--37476 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37442 TATATTATAT
37452 ATATTTTCAAAAA
1 ATATTTTCAAAAA
37465 ATATTTTCAAAA
1 ATATTTTCAAAA
37477 CTATATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
ATATTTTCAAAAA
Found at i:37483 original size:68 final size:69
Alignment explanation
Indices: 37408--37554 Score: 210
Period size: 70 Copynumber: 2.1 Consensus size: 69
37398 AACTATATTA
*
37408 TATATATATATTCAAAAAATGTTTTTTAAAACTATATA-T-TATATATATTTTCAAAAA-ATATT
1 TATATATAT-TTC-AAAAATG-TTTTCAAAACTATATACTATATATATATTTTCAAAAATA-ATT
*
37470 TTCAAAAC
62 CTCAAAAC
37478 TATATATATTTTCAAAAATGTTTTCAAAACTATATACTATATATATATTTTCAAAAATAATTCTC
1 TATATATA-TTTCAAAAATGTTTTCAAAACTATATACTATATATATATTTTCAAAAATAATTCTC
37543 AAAAC
65 AAAAC
37548 TATATAT
1 TATATAT
37555 TATATATGCT
Statistics
Matches: 71, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
68 15 0.21
69 8 0.11
70 46 0.65
71 2 0.03
ACGTcount: A:0.46, C:0.09, G:0.01, T:0.44
Consensus pattern (69 bp):
TATATATATTTCAAAAATGTTTTCAAAACTATATACTATATATATATTTTCAAAAATAATTCTCA
AAAC
Found at i:37502 original size:30 final size:31
Alignment explanation
Indices: 37447--37513 Score: 118
Period size: 30 Copynumber: 2.2 Consensus size: 31
37437 AACTATATAT
37447 TATATATATTTTCAAAAAATATTTTCAAAAC
1 TATATATATTTTCAAAAAATATTTTCAAAAC
*
37478 TATATATATTTTC-AAAAATGTTTTCAAAAC
1 TATATATATTTTCAAAAAATATTTTCAAAAC
37508 TATATA
1 TATATA
37514 CTATATATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 22 0.63
31 13 0.37
ACGTcount: A:0.46, C:0.09, G:0.01, T:0.43
Consensus pattern (31 bp):
TATATATATTTTCAAAAAATATTTTCAAAAC
Found at i:37530 original size:39 final size:40
Alignment explanation
Indices: 37478--37561 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
37468 TTTTCAAAAC
* *
37478 TATATATATTTTCAAAAAT-GTTTTCAAAACTATATACTA
1 TATATATATTTTCAAAAATAATTCTCAAAACTATATACTA
*
37517 TATATATATTTTCAAAAATAATTCTCAAAACTATATATTA
1 TATATATATTTTCAAAAATAATTCTCAAAACTATATACTA
37557 TATAT
1 TATAT
37562 GCTATATGTA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 19 0.46
40 22 0.54
ACGTcount: A:0.45, C:0.10, G:0.01, T:0.44
Consensus pattern (40 bp):
TATATATATTTTCAAAAATAATTCTCAAAACTATATACTA
Found at i:47385 original size:18 final size:17
Alignment explanation
Indices: 47359--47392 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
47349 AACATAATAT
47359 AATAAATAAATAATAAAC
1 AATAAATAAAT-ATAAAC
*
47377 AATATATAAATATAAA
1 AATAAATAAATATAAA
47393 TAACACTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AATAAATAAATATAAAC
Found at i:47514 original size:14 final size:14
Alignment explanation
Indices: 47495--47522 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
47485 TATATATTAT
47495 ATATGTTTTCAAAA
1 ATATGTTTTCAAAA
47509 ATATGTTTTCAAAA
1 ATATGTTTTCAAAA
47523 CTATATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
ATATGTTTTCAAAA
Found at i:47534 original size:39 final size:38
Alignment explanation
Indices: 47418--47759 Score: 306
Period size: 39 Copynumber: 9.2 Consensus size: 38
47408 CTATATAACA
*
47418 TATATTATATTTTCAAAAACCA-TTTTAAAAACTATATA-
1 TATA-TATATTTTCAAAAA-TATTTTTAAAAACTATATAT
* *
47456 -CTATATGTTTTCAAAAATA-TTTTAAAAACTATATAT
1 TATATATATTTTCAAAAATATTTTTAAAAACTATATAT
* *
47492 TATATATGTTTTCAAAAATATGTTTTCAAAACTATATA-
1 TATATATATTTTCAAAAATAT-TTTTAAAAACTATATAT
* *
47530 T-TATATGTTTTC-AAAATGTTTTTAAAAAAACTATATAT
1 TATATATATTTTCAAAAATATTTTT--AAAAACTATATAT
*
47568 TATATATATTTTCAAAAAATATTTTTTAAAACTATATAT
1 TATATATATTTTC-AAAAATATTTTTAAAAACTATATAT
*
47607 TATATATATTTTCAAAAAATATTTTTTAAAACTATATAT
1 TATATATATTTTC-AAAAATATTTTTAAAAACTATATAT
* *
47646 TATATATATTTTTAAAAA-ATATTTTCAAAAC-------
1 TATATATATTTTCAAAAATAT-TTTTAAAAACTATATAT
* * *
47677 TATATATATTTTGAAAAATGTTTTT-AAAACTAAATACT
1 TATATATATTTTCAAAAATATTTTTAAAAACTATATA-T
* * *
47715 ATATACATATTTTACAAAAA-A-TTCTCAAAACTATATAT
1 -TATATATATTTT-CAAAAATATTTTTAAAAACTATATAT
47753 TATATAT
1 TATATAT
47760 GCTATATGTA
Statistics
Matches: 261, Mismatches: 20, Indels: 47
0.80 0.06 0.14
Matches are distributed among these distances:
30 5 0.02
31 21 0.08
32 1 0.00
35 21 0.08
36 19 0.07
37 50 0.19
38 20 0.08
39 109 0.42
40 5 0.02
41 10 0.04
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (38 bp):
TATATATATTTTCAAAAATATTTTTAAAAACTATATAT
Found at i:47591 original size:13 final size:13
Alignment explanation
Indices: 47571--47681 Score: 59
Period size: 14 Copynumber: 8.5 Consensus size: 13
47561 TATATATTAT
47571 ATATATTTTCAAA
1 ATATATTTTCAAA
* *
47584 AAATATTTTTTAAA
1 ATATA-TTTTCAAA
* *
47598 ACTATATATT--AT
1 A-TATATTTTCAAA
47610 ATATATTTTCAAA
1 ATATATTTTCAAA
* *
47623 AAATATTTTTTAAA
1 ATATA-TTTTCAAA
* *
47637 ACTATATATT--AT
1 A-TATATTTTCAAA
*
47649 ATATATTTTTAAA
1 ATATATTTTCAAA
*
47662 AAATATTTTCAAA
1 ATATATTTTCAAA
47675 ACTATAT
1 A-TATAT
47682 ATATTTTGAA
Statistics
Matches: 72, Mismatches: 17, Indels: 17
0.68 0.16 0.16
Matches are distributed among these distances:
11 14 0.19
12 4 0.06
13 22 0.31
14 26 0.36
15 6 0.08
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATATTTTCAAA
Found at i:47694 original size:70 final size:69
Alignment explanation
Indices: 47607--47752 Score: 197
Period size: 69 Copynumber: 2.1 Consensus size: 69
47597 AACTATATAT
* * * * *
47607 TATATATATTTTCAAAAAATATTTTTTAAAACTATATATTATATATAT-TTTTA-AAAAATATTT
1 TATATATATTTTC-AAAAAT-GTTTTTAAAACTAAATACTATATACATATTTTACAAAAA-ATTC
47670 TCAAAAC
63 TCAAAAC
*
47677 TATATATATTTTGAAAAATGTTTTTAAAACTAAATACTATATACATATTTTACAAAAAATTCTCA
1 TATATATATTTTCAAAAATGTTTTTAAAACTAAATACTATATACATATTTTACAAAAAATTCTCA
47742 AAAC
66 AAAC
47746 TATATAT
1 TATATAT
47753 TATATATGCT
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
68 23 0.34
69 28 0.41
70 17 0.25
ACGTcount: A:0.47, C:0.08, G:0.01, T:0.44
Consensus pattern (69 bp):
TATATATATTTTCAAAAATGTTTTTAAAACTAAATACTATATACATATTTTACAAAAAATTCTCA
AAAC
Found at i:47706 original size:30 final size:31
Alignment explanation
Indices: 47646--47708 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
47636 AACTATATAT
47646 TATATATATTTTTAAAAAATATTTTCAAAAC
1 TATATATATTTTTAAAAAATATTTTCAAAAC
* * *
47677 TATATATA-TTTTGAAAAATGTTTTTAAAAC
1 TATATATATTTTTAAAAAATATTTTCAAAAC
47707 TA
1 TA
47709 AATACTATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 21 0.72
31 8 0.28
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (31 bp):
TATATATATTTTTAAAAAATATTTTCAAAAC
Found at i:47989 original size:23 final size:24
Alignment explanation
Indices: 47963--48073 Score: 59
Period size: 24 Copynumber: 4.5 Consensus size: 24
47953 ATTTGTTTTC
47963 TTTTTTTCTTTTTCTT-TTCTCTT
1 TTTTTTTCTTTTTCTTCTTCTCTT
* * * *
47986 TTTTATATATTTTTCTTCATCCCTT
1 TTTT-TTTCTTTTTCTTCTTCTCTT
*
48011 TTTATTATTATTTTTCTTCTT-T-TT
1 TTT-TT-TTCTTTTTCTTCTTCTCTT
* * * *
48035 CCATTTTTTCTTTTCCATT-TTTTCTA
1 --TTTTTTTCTTTTTC-TTCTTCTCTT
48061 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
48074 TATATCAACT
Statistics
Matches: 66, Mismatches: 13, Indels: 17
0.69 0.14 0.18
Matches are distributed among these distances:
23 4 0.06
24 32 0.48
25 14 0.21
26 16 0.24
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTTTTCTTTTTCTTCTTCTCTT
Found at i:48050 original size:14 final size:14
Alignment explanation
Indices: 48031--48059 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
48021 TTTTTCTTCT
48031 TTTTCCATTTTTTC
1 TTTTCCATTTTTTC
48045 TTTTCCATTTTTTC
1 TTTTCCATTTTTTC
48059 T
1 T
48060 ATTTTTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTCCATTTTTTC
Found at i:48549 original size:20 final size:20
Alignment explanation
Indices: 48496--48551 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
48486 TTGAACAAGC
*
48496 TCTTCTCATTATGAACTTAT
1 TCTTCTCATTATGAACTGAT
48516 TCTCTCTC-TT-TGAA-TGATT
1 TCT-TCTCATTATGAACTGA-T
48535 TCTTCTCATTATGAACT
1 TCTTCTCATTATGAACT
48552 CTTCTATTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
18 6 0.20
19 10 0.33
20 9 0.30
21 5 0.17
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.50
Consensus pattern (20 bp):
TCTTCTCATTATGAACTGAT
Found at i:48608 original size:119 final size:117
Alignment explanation
Indices: 48396--48715 Score: 381
Period size: 119 Copynumber: 2.7 Consensus size: 117
48386 GAACAAATTC
* * * * **
48396 TTCTCCCTCTTTGGATGAGTTGTTCTCATTATGAACCCTTCCACTGGAAATGGTGATTCACCTCC
1 TTCTCCCTCTTTGAATGAATTCTTCTCATTATGAA-CCTTCCATTGGAAA-AATGATTCACCTCC
* *
48461 TTCTGTGATGGTTTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTA
64 TTCTGTGATGGATTTGAGCAAAAGGTTGAAAAAGCTCTTCTCATTATGAACTTA
* * * *
48515 TTCTCTCTCTTTGAATGATTTCTTCTCATTATGAACTCTTCTATTGGAAAAATTGATCCACCTCC
1 TTCTCCCTCTTTGAATGAATTCTTCTCATTATGAAC-CTTCCATTGGAAAAA-TGATTCACCTCC
* * * *
48580 TTCTGTGATGGATTTGAGTAAAATGTTGAAAAAGTTCTTCTCATTATGAACTTT
64 TTCTGTGATGGATTTGAGCAAAAGGTTGAAAAAGCTCTTCTCATTATGAACTTA
* * * * *
48634 TTCTCCCTATTCGGAA-GAATGCTTCTCATTATAAACCATTCCATTGGAAATAATGATTCATCTC
1 TTCTCCCTCTT-TGAATGAATTCTTCTCATTATGAACC-TTCCATTGGAAA-AATGATTCACCTC
48698 CTTCTGTGATGGATTTGA
63 CTTCTGTGATGGATTTGA
48716 ATCTATAAAA
Statistics
Matches: 172, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
118 2 0.01
119 165 0.96
120 5 0.03
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (117 bp):
TTCTCCCTCTTTGAATGAATTCTTCTCATTATGAACCTTCCATTGGAAAAATGATTCACCTCCTT
CTGTGATGGATTTGAGCAAAAGGTTGAAAAAGCTCTTCTCATTATGAACTTA
Found at i:49226 original size:102 final size:101
Alignment explanation
Indices: 48953--49264 Score: 419
Period size: 100 Copynumber: 3.1 Consensus size: 101
48943 AAGAGAAGCT
* * * * * *
48953 ATCTCAGGTGAGATAAAATTTTGTTTCAAGTGAAAAAAATTCAAAATTTTTGTTTCAAGGGAAAC
1 ATCTCAAGTGAGATAAATTTTTATTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAAC
* * *
49018 TGTCTCAAGTGAGACAAAATTGGTTTTGAGAAAAAA
66 TGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAAA
* * ** **
49054 ATCCCAAGTGAGAT-AATTTTTTTTTGGAGTGAAACAATTTCAAAATTTGCATTTCAAGGGAAAC
1 ATCTCAAGTGAGATAAATTTTTATTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAAC
49118 TGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAATA
66 TGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAA-A
*
49155 ATCTCAAGTGAGATAAATTTTTATTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAGC
1 ATCTCAAGTGAGATAAATTTTTATTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAAC
* *
49220 TGTCTCAAGCGAAACGAAATTTGTTTTTAAGAAAAACA
66 TGTCTCAAGCGAGACGAAA-TTGGTTTTAAGAAAAA-A
*
49258 ATGTCAA
1 ATCTCAA
49265 ATGTTCGTGT
Statistics
Matches: 183, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
100 73 0.40
101 26 0.14
102 62 0.34
103 22 0.12
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (101 bp):
ATCTCAAGTGAGATAAATTTTTATTTCAAGTGAAACAATTTCAAAATTTGTGTTTCAAGGGAAAC
TGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAAA
Found at i:49257 original size:66 final size:67
Alignment explanation
Indices: 49187--49331 Score: 156
Period size: 66 Copynumber: 2.2 Consensus size: 67
49177 ATTTCAAGTG
* * *
49187 AAACAATTTCAAAAT-TT-GTGT-TTCAAGGGAAG-CTGTCTCAAGCGAAACGAAATTTGTTTTT
1 AAACAATATCAAAATGTTCGTGTCTT-AA-GGAAGACTGTATCAAGCGAAACAAAATTTG-TTTT
49248 AAGAA
63 AAGAA
* * * * *
49253 AAACAATGTC-AAATGTTCGTGTCTTGAGGAAGACTGTATCAAGTGAGACAAAATTTGTTTTGAG
1 AAACAATATCAAAATGTTCGTGTCTTAAGGAAGACTGTATCAAGCGAAACAAAATTTGTTTTAAG
49317 AA
66 AA
49319 AAACAATATCAAA
1 AAACAATATCAAA
49332 TGAGATAAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
65 4 0.06
66 33 0.50
67 27 0.41
68 2 0.03
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.30
Consensus pattern (67 bp):
AAACAATATCAAAATGTTCGTGTCTTAAGGAAGACTGTATCAAGCGAAACAAAATTTGTTTTAAG
AA
Found at i:54487 original size:59 final size:58
Alignment explanation
Indices: 54424--54655 Score: 163
Period size: 59 Copynumber: 3.9 Consensus size: 58
54414 TAGCACTCTC
*
54424 AGTGCTCTATCTGGAAAAT-CATACGC-TTAGTATGATTCCCCTTTCATTTTAGCACACGA
1 AGTGCCCTATCT-GAAAATCCATAC-CATTAGTATGATT-CCCTTTCATTTTAGCACACGA
* * * ** *
54483 AGTGCCCTAT-TCAAAAATTCATACCATTAATATGATT-TTTTTACCATTTTAGCACATGA
1 AGTGCCCTATCT-GAAAATCCATACCATTAGTATGATTCCCTTT--CATTTTAGCACACGA
* * * * **
54542 AATGCCCTATGTGAAAATCCATACCATTAGTATGATTTCCTTATC-TTTGTAGCACCCTT
1 AGTGCCCTATCTGAAAATCCATACCATTAGTATGATTCCCTT-TCATTT-TAGCACACGA
** * **
54601 AGTGCTTTATCT-AGAAATCCATA-CACTCAGTATGATTCCCTACCATTTTAGCACA
1 AGTGCCCTATCTGA-AAATCCATACCA-TTAGTATGATTCCCTTTCATTTTAGCACA
54656 TAAAATGCCC
Statistics
Matches: 136, Mismatches: 26, Indels: 23
0.74 0.14 0.12
Matches are distributed among these distances:
57 3 0.02
58 20 0.15
59 109 0.80
60 3 0.02
61 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.36
Consensus pattern (58 bp):
AGTGCCCTATCTGAAAATCCATACCATTAGTATGATTCCCTTTCATTTTAGCACACGA
Found at i:59825 original size:81 final size:80
Alignment explanation
Indices: 59534--63007 Score: 4410
Period size: 81 Copynumber: 43.1 Consensus size: 80
59524 ATTCCTTTAG
* * * ** * *
59534 TCTTTTACCCAAAGGCATTTAACATTTCATTTAACTTGCATAATTGACACATTTCTGCCAAAATG
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCC-AAATG
59599 CACAGCTAGGCCATTAA
64 CACAGCTAGGCCATTAA
* *
59616 TCTTTTACTCAACGGTATTTAACTGTTCATCTAACTAGCATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
* *
59681 ACAGTTAAGCCATTAA
65 ACAGCTAGGCCATTAA
* ** * *
59697 TCTTTTACTCAA-GGTATTTAACCGTTCATATAACTATCATAACTGACACTTTCCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACTTT-CTGCCAAATGC
*
59761 ACATCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
*
59777 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
*
59842 ACAGCTAGGCAATTAA
65 ACAGCTAGGCCATTAA
* * *
59858 TCTTTTACTCAACGGTATTTAACTGTTCATCTAAATGGCATAATTGAAACATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
* *
59923 ACAGTTAAGCCATTAA
65 ACAGCTAGGCCATTAA
* * * * *
59939 TCTATTACTCAACGATATTTAACCGTTCATATAACTGGCATAATTGACACTTTTTTGCAAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
60004 ACAGCTAGTCCATTAA
65 ACAGCTAGGCCATTAA
* *
60020 TCTTTTACTCAACGGTATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
60085 ACAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* ** * * * *
60101 TCTTTTACTCAATGGTATTTAATGGTTCATGTAACTGGTATAATTGACACCATTCTCCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
**
60166 ACAATTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* *
60182 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACAGGCATAATTGACACCTTACTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
* *
60247 ACAGTTAGACCATTAA
65 ACAGCTAGGCCATTAA
* * * * *
60263 TCTTTTACTCAACGGTATTTAAACATTCATCTAACTAGCATAATTAACACATTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
** *
60328 ATGGCTAGGCCAATAA
65 ACAGCTAGGCCATTAA
* * ** * *
60344 ACTTTTACTCAACGATATTTAGTCATTCATCTAACTGGCATAATTGACACCTTTTTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
60409 ACAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* *
60425 TCTTTTACTCAACGGTATTTAACTGTTCATCTAACTGGCATAATTGACA-TCTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACT-TTCTGCCAAATGC
60489 ACAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * * *
60505 TCTTTTACTC-ACAGTATTTAACCATTCATCTAACT-GAATAATTGACACATTTCCT-CTAAATA
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTT-CTGCCAAATG
60567 CACAGCTAGGCCATTAA
64 CACAGCTAGGCCATTAA
* *
60584 TCTTTTACTCAACGGTATTTAATCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
*
60649 ACAGCTAGGCCATTATT
65 ACAGCTAGGCCATTA-A
* * *
60666 TTTTTTACTCAACGGTATTTAACCATTCATCTAACTGGCATAATTGACACATTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
60731 ACAGCTAGGTCATTAA
65 ACAGCTAGGCCATTAA
* * * * * *
60747 TCATTTACTCAAAGGTATTTAACCGTTAATTTAATTGACATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
* * *
60812 TCAACTAGGCTATTAA
65 ACAGCTAGGCCATTAA
*
60828 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGT
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
* *
60893 ATAGCTAGTCCATTAA
65 ACAGCTAGGCCATTAA
* * * * * * *
60909 TATTTTACTCAACGATATTTAATCATTCATCTAACTGGCATAGTTGACACCTTTCTACCAAATTC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
60974 ACAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * *
60990 TCCTTTACTCCACGGTATTTAACTGTTCATCTAACTGGCATAATTGACATATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
*
61055 ATAGCTAAGG-CATTAA
65 ACAGCT-AGGCCATTAA
* * * *
61071 TCTTTTACTCAATGGTATTTAACCGTTCATCTAACTGGTATAATTGATACATTTCTTCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
61136 ACATCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * *
61152 TCTTTTACTCAACGGTTTTTAACCGTTCATCTAACTGGTATAATTGACAATTTTCTAG-CAAATG
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGAC-ACTTTCT-GCCAAATG
* *
61216 CATAGCTAGGCCATTAC
64 CACAGCTAGGCCATTAA
* ** * *
61233 TCTTTTACTCAACGGTGTTTAACCGTTCATCTAACTACCATAGTTGAAACATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
* *
61298 ACAGTTAAGCCATTAA
65 ACAGCTAGGCCATTAA
* * *
61314 TCTTTTACTCAACGGTATTTAACCGTTCATCTAAATGGCATAATTGACACATTTCTACCAAATTC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
61379 ACAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * *
61395 TCTTTTACTCAACGGTATTTAACCATTCATCTAACTAGCATAATTGACATATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
61460 ACAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * *
61476 TCTTTTACTCAATGGTATTTAACTGTTCATCTAATTGGCATAATTGACACATTTCTTCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
61541 ACATCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * *
61557 TCTTTTACTCAACGGTTTTTAATCGTTCATCTAACTGGCATAATTGACACCTTTCTACCAAATTC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
*
61622 ACAGCTAGGTCATTAA
65 ACAGCTAGGCCATTAA
* * * *
61638 TATTTTACTCAATGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCTAGATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
61703 A-A-CTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * *
61717 TCTTTTACTCAACGGTATTTAATCGTTGATCTAACTAGCATAATTGACACCTTTCTGCCAAATAG
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAAT-G
* *
61782 -AGATCTAGGCCATTAA
64 CACAGCTAGGCCATTAA
*
61798 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
61863 ACAACTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * * *
61879 TCTTTTACTCAACGGTATTTAACCGTTCATCGAACTGGCATAATTGAAATATTTCTTCTAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
** *
61944 ACAATTAAGCCATTAA
65 ACAGCTAGGCCATTAA
* * * * *
61960 TCTTTTACTCAACGATATTTAATCGTTCATATAACTGGAATAATTGACACTTTCTGCAAAATGCA
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACTTTCTGCCAAATGCA
62025 CAGCTAGGCCATTAA
66 CAGCTAGGCCATTAA
* * * * *
62040 TCTTTTACTCAATGGTATTTAACTGTTCATCTAACTGGCATAATTGACACATTTCTACTAAATAC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
62105 ACAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * * *
62121 TCTTTTACTCAATGGTATTTAATCGTTCATCTAACTGGTATAATTGACATATTTCTCCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
*
62186 ACAGTTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * *
62202 TCTTTTACTCAAAGGTATCTAACCGTTCATCTAACTGGCATAATTGACACCTTACTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
62267 ACAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * *
62283 TATTTTACTCAA--GTATATAACCATTCATCTAACTGGCATAATTGACACATTTCTACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
**
62346 ATGGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* *
62362 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGTATAATTGACA-TATTTTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACT-TTCTGCCAAATGC
* *
62426 ACAACTAGGCCGTTAA
65 ACAGCTAGGCCATTAA
* * **
62442 TCTTTTACTCAACGGTATTTAACCGTTCATCAAACTGCCATAATTGACACATTTCAACCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
62507 ACTGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
*
62523 TCTTTTACTCAATGGTATTT-ACTCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATG
1 TCTTTTACTCAACGGTATTTAAC-CGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATG
*
62587 CACAACTAGGCCATTAA
64 CACAGCTAGGCCATTAA
* * *
62604 TCTTTTACTCAACGGTATTTAATCGTTCATCTAATTGGCATAATTG-CATCTTTCTTCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
*
62668 AC-GACTTGGCCATTAA
65 ACAG-CTAGGCCATTAA
* *
62684 TCTTTTACTCAACGGTA-TTAACCATTCATATATAACTGGCATAATTGACACATTTCTGCCAAAT
1 TCTTTTACTCAACGGTATTTAACCGTTC--ATCTAACTGGCATAATTGACAC-TTTCTGCCAAAT
*
62748 G--CA--TA-GCTATTAA
63 GCACAGCTAGGCCATTAA
*
62761 TCTTTTACTCAACGGTATTTAACAGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
* *
62826 ACAGTTAGACCATTAA
65 ACAGCTAGGCCATTAA
* * * * *
62842 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTTGCATTATTG-CACCTTTCTTCTAATTGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
*
62906 ACAACTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * *
62922 --TATT--TCAACGATATTTAACCGTTCATCTAACTGGTATAAATTGACACCTTTCTGCCAAATG
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCAT-AATTGACA-CTTTCTGCCAAATG
* * *
62983 TAGAGCTAGGCCGTTAA
64 CACAGCTAGGCCATTAA
63000 TCTTTTAC
1 TCTTTTAC
63008 ATTATAACTA
Statistics
Matches: 2955, Mismatches: 368, Indels: 138
0.85 0.11 0.04
Matches are distributed among these distances:
76 65 0.02
77 28 0.01
78 53 0.02
79 207 0.07
80 364 0.12
81 2083 0.70
82 154 0.05
83 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (80 bp):
TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACTTTCTGCCAAATGCA
CAGCTAGGCCATTAA
Found at i:64459 original size:20 final size:20
Alignment explanation
Indices: 64405--64460 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
64395 CCCTAACTGA
**
64405 GGTATAGATACCCTATCTAT
1 GGTATAGATACCCTGCCTAT
*
64425 GGTATAGATACCCTGCCTCT
1 GGTATAGATACCCTGCCTAT
64445 GGTATAGATACCCTGC
1 GGTATAGATACCCTGC
64461 TAACATTCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (20 bp):
GGTATAGATACCCTGCCTAT
Done.