genome.fa.s3428.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003428.1 Hibiscus syriacus cultivar Beakdansim tig00007225_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184769

Tables:   1   2   

This is table  1  of  2  ( 124 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2031--2112	5	15.2	5	78	14	83	8	20	52	18	1.71
2024--2112	22	4.0	22	98	0	169	10	21	50	17	1.75
2113--2205	9	9.7	9	77	11	78	30	27	25	16	1.96
2132--2206	29	2.5	31	89	8	120	29	26	26	17	1.97
2113--2205	19	4.8	19	76	17	75	30	27	25	16	1.96
9368--9449	5	15.2	5	78	14	83	8	20	52	18	1.71
9361--9449	22	4.0	22	98	0	169	10	21	50	17	1.75
9450--9542	9	9.7	9	77	11	78	30	27	25	16	1.96
9469--9543	29	2.5	31	89	8	120	29	26	26	17	1.97
9450--9542	19	4.8	19	76	17	75	30	27	25	16	1.96
12703--12739	8	4.5	8	93	3	56	0	18	0	81	0.70
12703--12739	17	2.2	17	95	4	67	0	18	0	81	0.70
12703--12742	9	4.6	9	90	6	64	0	20	0	80	0.72
17319--17444	56	2.2	55	91	5	207	28	21	18	31	1.97
17443--17552	42	2.7	41	81	4	132	30	21	20	26	1.98
17452--18570	215	5.2	215	93	0	1862	31	19	15	33	1.93
19376--19677	126	2.4	124	88	3	435	24	27	15	32	1.96
24803--24833	15	2.1	15	93	0	53	12	16	0	70	1.16
31123--31198	24	3.3	23	74	15	68	64	1	5	28	1.23
31993--32060	23	3.0	23	70	12	59	66	4	2	26	1.25
35484--35530	20	2.4	19	79	10	58	55	8	17	19	1.67
35272--35744	181	2.6	181	88	1	696	42	14	16	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37913--37974	21	3.0	21	92	0	97	41	11	29	17	1.84
38011--38071	32	1.9	32	89	0	95	29	0	47	22	1.52
39271--39303	4	8.2	4	100	0	66	24	0	27	48	1.51
39882--39930	19	2.6	19	96	0	89	32	2	10	55	1.45
40164--40582	200	2.1	200	96	0	766	35	15	19	29	1.92
41044--41614	200	2.9	200	93	0	973	35	14	18	31	1.91
43091--43148	6	9.7	6	84	0	62	39	6	32	20	1.79
43091--43148	12	4.8	12	89	0	80	39	6	32	20	1.79
44354--46025	184	9.1	184	93	2	2818	36	14	16	32	1.89
44354--46025	550	3.0	550	96	0	3050	36	14	16	32	1.89
44354--46025	734	2.3	726	93	2	2873	36	14	16	32	1.89
49051--49212	86	1.9	87	93	1	281	33	14	10	41	1.80
49456--49525	28	2.5	28	100	0	140	18	38	12	30	1.88
49876--49923	22	2.2	22	100	0	96	45	25	4	25	1.71
50891--50939	25	2.0	24	92	7	82	28	4	22	44	1.71
53294--53368	29	2.6	29	93	4	125	30	0	25	44	1.55
60432--60505	29	2.6	29	89	4	105	32	1	20	45	1.59
68469--68500	2	16.0	2	100	0	64	50	0	0	50	1.00
72024--72060	18	2.1	18	89	0	56	51	0	0	48	1.00
82398--82523	60	2.1	60	77	5	130	33	19	14	32	1.92
83092--83154	31	2.1	31	96	3	119	42	3	6	47	1.44
85446--85479	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86493--86546	21	2.6	21	79	5	65	22	25	16	35	1.95
86535--86668	20	6.7	20	84	5	135	30	26	18	23	1.98
86521--86648	41	3.1	41	78	3	125	28	27	17	25	1.98
86822--86855	12	2.9	12	86	4	52	17	41	5	35	1.74
89933--89988	20	2.8	20	88	0	85	37	21	23	17	1.94
90025--90071	19	2.5	19	96	0	85	12	19	21	46	1.82
90211--90247	14	2.6	14	86	0	56	48	21	0	29	1.50
91657--91746	42	2.2	42	88	4	139	22	15	40	22	1.91
92090--92155	20	3.3	20	84	0	69	40	25	18	15	1.89
92109--92176	20	3.5	20	81	2	75	39	23	22	14	1.91
92149--92212	19	3.7	18	76	20	64	43	23	18	14	1.86
92202--92323	19	6.6	19	75	11	92	13	20	22	43	1.87
92269--92323	20	2.8	19	83	8	65	16	23	23	36	1.94
92865--92911	18	2.6	18	83	12	69	19	12	40	27	1.88
94242--94292	20	2.5	20	93	0	84	50	23	13	11	1.74
94888--94962	21	3.6	21	78	10	91	20	17	25	37	1.94
94908--94982	20	3.7	20	77	10	80	21	18	25	34	1.96
94888--94985	41	2.4	41	91	0	160	21	17	23	37	1.94
94974--95022	20	2.4	20	86	3	62	22	22	16	38	1.92
94908--95003	41	2.3	41	83	3	113	21	19	22	35	1.96
95012--95064	21	2.5	22	80	17	67	33	20	26	18	1.96
95793--96136	74	4.6	74	84	7	396	44	12	10	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95873--96143	147	1.8	150	89	4	433	43	14	11	31	1.80
96226--96461	112	2.1	112	91	1	375	44	12	13	29	1.80
111606--111664	31	2.0	29	83	6	73	52	8	13	25	1.68
117648--117673	13	2.0	13	100	0	52	76	0	0	23	0.78
118884--118950	3	22.3	3	77	17	59	71	0	2	25	1.00
118880--118950	28	2.7	26	78	18	67	73	0	2	23	0.97
118911--118953	22	2.0	22	86	9	61	67	0	2	30	1.03
119038--119304	38	7.2	35	76	14	216	44	7	3	44	1.49
119038--119303	37	7.1	38	76	10	237	44	7	3	44	1.49
118987--119303	147	2.2	142	78	13	297	46	6	3	43	1.46
119916--120812	169	5.4	164	88	3	1127	24	21	24	29	1.99
119916--120812	84	10.8	85	86	4	1123	24	21	24	29	1.99
122907--123115	76	2.8	76	88	2	305	20	23	32	23	1.98
125696--125756	20	2.9	21	85	7	70	16	26	36	21	1.94
131516--131700	75	2.4	76	90	1	273	20	23	32	23	1.98
135431--135471	18	2.4	18	80	11	52	73	0	7	19	1.07
136719--136767	4	12.5	4	79	16	50	73	0	2	24	0.94
136753--136791	3	12.7	3	89	5	60	66	0	2	30	1.05
136719--136803	22	3.8	21	78	18	75	69	0	2	28	1.01
136738--136794	10	5.8	10	85	6	73	70	0	1	28	0.98
136738--136803	10	5.9	12	77	19	56	69	0	1	28	0.97
136877--136943	33	2.0	33	91	0	107	44	5	2	46	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136934--137184	37	6.8	36	79	10	240	44	7	3	45	1.48
138317--138364	22	2.1	23	84	3	62	33	31	14	20	1.93
139711--139885	60	2.9	59	80	5	165	33	23	5	37	1.79
140039--140170	60	2.2	61	80	8	146	44	5	18	31	1.72
141297--141369	28	2.6	28	95	0	128	21	43	9	24	1.82
145245--145297	20	2.6	21	90	3	81	39	22	24	13	1.90
150056--150245	36	5.2	36	85	1	229	36	22	19	21	1.95
150627--151023	51	7.6	52	82	8	348	34	18	24	23	1.96
150616--151016	157	2.6	155	77	9	390	34	18	23	23	1.96
151012--151622	55	11.2	55	82	6	620	31	14	26	27	1.95
151200--151570	108	3.4	108	93	1	613	30	13	28	27	1.94
151051--151619	163	3.5	161	83	6	627	30	14	26	27	1.95
151200--151619	108	3.9	107	90	4	598	30	13	27	28	1.94
152472--152545	28	2.6	28	100	0	148	18	43	12	25	1.85
155638--155713	25	3.0	25	96	0	134	46	10	10	32	1.73
155871--155922	24	2.2	24	100	0	104	11	11	21	55	1.66
155859--155921	14	4.8	14	75	15	62	11	11	20	57	1.64
156122--156220	24	4.2	23	75	10	83	12	11	17	59	1.60
158253--158303	25	2.0	25	96	0	93	47	11	9	31	1.73
158586--158637	24	2.2	24	100	0	104	11	11	21	55	1.66
158573--158637	14	4.9	14	74	14	57	10	10	21	56	1.63
158818--158916	24	4.2	23	75	13	85	12	10	17	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164407--164437	11	2.8	11	95	0	53	80	0	19	0	0.71
167092--167163	15	4.9	15	82	3	101	41	6	19	31	1.78
167092--167163	30	2.4	30	97	2	137	41	6	19	31	1.78
167146--167215	20	3.5	20	96	0	131	40	10	14	35	1.79
167381--167452	31	2.5	27	80	14	81	52	1	1	44	1.18
167380--167480	28	3.5	28	77	17	91	52	1	0	44	1.19
167495--167570	23	3.3	23	80	7	66	51	0	0	48	1.00
167494--167562	23	3.0	24	79	6	72	53	0	0	46	1.00
167995--168027	2	16.5	2	100	0	66	48	0	0	51	1.00
168131--168195	31	2.1	31	91	0	103	24	15	10	49	1.76

Tables:   1   2