genome.fa.s3429.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003429.1 Hibiscus syriacus cultivar Beakdansim tig00007227_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60560

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3483--3540	30	1.9	30	96	0	107	31	34	0	34	1.58
3646--3670	4	6.2	4	100	0	50	24	24	0	52	1.48
7583--7678	31	3.1	31	80	5	106	25	16	23	34	1.95
12038--12124	31	2.8	30	80	3	84	26	18	17	37	1.92
12465--12499	18	1.9	18	94	0	61	20	2	28	48	1.63
13480--13518	20	1.9	20	84	5	51	51	10	0	38	1.36
14468--14513	22	2.2	22	84	7	60	45	19	21	13	1.84
14784--14839	20	2.8	20	86	0	76	30	28	8	32	1.88
14747--14877	20	6.6	20	71	10	74	31	25	11	32	1.91
15427--15486	20	3.3	20	65	29	53	46	21	13	18	1.83
15490--15542	20	2.6	20	87	3	70	15	15	18	50	1.77
15506--15547	20	2.1	20	90	0	66	16	11	21	50	1.77
17098--17241	41	3.5	40	81	4	148	27	35	14	22	1.93
17348--17527	21	8.6	20	67	10	92	17	11	36	34	1.86
17339--17527	42	4.5	43	70	10	122	18	11	35	34	1.86
17348--17492	63	2.3	63	79	2	175	17	8	38	35	1.81
17348--17527	63	2.9	61	73	6	162	17	11	36	34	1.86
17866--17952	21	4.2	20	81	8	86	22	40	16	20	1.91
17828--17960	21	6.4	21	75	6	76	24	38	14	22	1.91
19456--19535	20	4.0	20	76	0	88	42	20	15	22	1.88
19532--19581	20	2.5	20	96	0	91	26	14	22	38	1.91
22085--22138	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22876--22913	16	2.5	15	84	12	51	65	0	5	28	1.14
22921--22964	22	2.0	21	91	4	70	27	11	40	20	1.86
23048--23224	20	8.9	20	75	11	132	41	7	23	27	1.80
23057--23224	60	2.8	57	80	9	194	41	7	23	26	1.81
23078--23245	60	2.8	60	81	9	175	40	9	22	27	1.85
23270--23325	20	2.8	20	84	7	69	44	8	23	23	1.81
23049--23325	40	6.9	40	71	13	174	39	9	22	28	1.84
23045--23325	122	2.3	119	76	8	282	40	8	22	28	1.84
34990--35215	111	2.0	113	86	1	321	28	17	21	31	1.96
37781--37950	60	2.8	60	77	1	171	31	22	5	40	1.78
38635--38671	15	2.5	15	95	0	65	8	70	16	5	1.30
38868--39003	69	2.0	69	89	0	209	35	26	11	27	1.90
43758--43782	12	2.1	12	100	0	50	16	24	16	44	1.86
46858--47085	41	5.4	41	79	9	260	20	20	23	35	1.96
46887--46955	20	3.4	20	74	4	75	11	20	27	40	1.87
46992--47065	21	3.6	21	70	3	78	18	17	28	35	1.94
47057--47105	20	2.5	20	100	0	98	14	24	18	42	1.87
47024--47142	61	2.0	60	81	9	143	17	21	20	41	1.91
47223--47267	6	7.5	6	100	0	90	33	51	15	0	1.44
47749--47799	5	10.4	5	97	2	95	0	41	21	37	1.54
47800--47826	6	4.5	6	100	0	54	0	14	51	33	1.43
47960--48080	21	5.9	20	77	4	134	39	23	21	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47966--48102	41	3.3	41	97	1	256	37	24	19	17	1.93
47919--48039	62	2.0	61	82	14	151	40	22	21	15	1.91
47987--48105	21	5.8	21	76	4	134	35	25	18	21	1.95
50730--51141	134	3.1	135	83	4	503	24	17	28	30	1.97

Tables:   1

The End!