Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000343.1 Hibiscus syriacus cultivar Beakdansim tig00000634_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91370

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
805--858
27
2.1
27
82
6
67
1
20
12
64
1.36
1314--1378
3
21.7
3
96
0
121
64
0
1
33
1.03
7624--7746
30
4.1
30
82
6
124
20
30
27
21
1.98
7609--7746
60
2.3
60
76
9
138
21
28
28
21
1.98
8921--9043
30
4.1
30
87
2
158
17
32
29
21
1.96
9967--10062
35
2.7
35
85
0
129
39
25
2
33
1.67
10546--10833
145
2.0
148
90
2
456
45
9
7
37
1.65
11397--11434
20
1.9
20
88
0
58
36
21
15
26
1.93
11396--11455
22
2.9
21
77
5
59
36
23
13
26
1.92
11603--11652
22
2.3
22
100
0
100
28
26
14
32
1.94
11417--11653
87
2.7
88
78
11
247
35
24
13
27
1.92
11698--11753
20
2.9
19
76
10
60
25
10
30
33
1.90
17432--17502
29
2.4
30
80
4
81
33
0
12
53
1.39
19243--19370
51
2.5
51
83
3
170
17
34
30
17
1.93
23568--23606
18
2.2
18
100
0
78
20
17
30
30
1.96
25121--25333
110
1.9
111
92
0
356
46
8
9
35
1.66
25588--25714
51
2.5
50
87
1
164
19
32
33
14
1.93
31910--31992
44
1.9
44
85
7
116
48
4
4
42
1.45
32614--32688
36
2.1
37
87
5
109
50
1
2
45
1.24
32834--32871
20
1.9
20
88
0
58
21
26
10
42
1.85
34878--34935
2
29.0
2
100
0
116
50
0
0
50
1.00
38864--38894
2
15.5
2
100
0
62
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44444--44487
23
1.9
23
95
0
79
45
0
2
52
1.13
44646--44957
76
4.1
76
96
0
570
36
22
19
21
1.95
44905--44988
31
2.8
31
94
3
145
35
23
19
21
1.96
44829--45064
107
2.2
107
94
1
413
34
23
20
21
1.96
44934--45976
76
13.7
76
97
0
1942
35
22
20
20
1.96
45924--46007
31
2.8
31
92
3
136
36
23
17
21
1.94
47096--47256
59
2.9
55
79
9
191
24
22
14
38
1.92
49333--49672
114
3.0
114
89
0
520
31
20
14
33
1.93
51937--51978
18
2.3
18
91
4
66
0
21
0
78
0.75
52275--52323
2
24.5
2
100
0
98
51
0
0
48
1.00
56586--56653
30
2.2
30
82
7
75
60
0
7
32
1.24
56602--56643
19
2.2
19
83
8
50
64
0
4
30
1.14
56667--56691
7
3.6
7
100
0
50
32
0
0
68
0.90
58755--58814
17
3.6
17
72
18
56
56
0
0
43
0.99
58743--58814
37
2.0
35
89
5
108
51
0
1
47
1.09
75903--75952
26
2.0
25
92
4
82
40
18
12
30
1.86
88787--88824
16
2.5
15
87
8
51
28
0
0
71
0.87
89327--89383
25
2.2
26
84
3
71
49
8
0
42
1.34

Tables:   1

The End!