genome.fa.s3430.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003430.1 Hibiscus syriacus cultivar Beakdansim tig00007228_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63510

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8330--8392	29	2.1	30	85	5	83	49	7	12	30	1.69
9186--9254	29	2.4	31	76	18	76	47	7	15	28	1.72
8003--10558	851	3.0	853	91	1	4105	37	10	18	33	1.85
14231--14280	26	1.9	26	95	0	91	36	14	20	30	1.91
14504--14554	18	2.8	18	90	0	75	45	13	9	31	1.76
15935--16028	47	2.0	47	100	0	188	36	2	17	44	1.60
16182--16344	64	2.5	64	84	5	204	33	21	19	25	1.97
16987--17045	23	2.6	23	83	0	73	22	23	25	28	1.99
23727--23787	23	2.7	23	94	0	104	18	26	26	29	1.98
27620--27708	24	3.9	24	78	15	116	29	26	21	22	1.99
28018--28057	14	2.9	14	88	7	55	40	27	7	25	1.82
36382--36462	24	3.5	24	79	15	100	29	28	22	19	1.98
42401--42433	11	2.8	12	86	13	50	33	15	0	51	1.43
42903--42949	20	2.2	20	85	7	58	29	21	17	31	1.96
44902--44932	12	2.6	12	100	0	62	25	22	0	51	1.48
45546--45605	2	30.0	2	100	0	120	50	0	0	50	1.00
49149--49206	9	5.7	11	84	11	56	58	3	0	37	1.15
49175--49206	3	10.3	3	93	6	55	65	0	0	34	0.93
50751--51334	56	10.7	56	87	3	750	34	17	11	36	1.85
50751--51341	111	5.4	110	86	4	765	34	17	11	36	1.86
51255--51344	45	2.0	44	95	2	162	34	13	11	41	1.80
51751--51800	20	2.5	20	87	6	66	22	34	12	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56328--56953	54	11.6	54	84	1	720	29	18	17	34	1.94
56348--56953	161	3.8	160	87	2	770	30	18	16	34	1.93
56345--56945	215	2.8	213	85	2	774	30	18	16	34	1.93
59967--60459	56	8.9	56	89	1	688	33	17	12	37	1.87
59967--60452	111	4.4	111	88	0	677	33	17	11	37	1.86
59961--60452	223	2.2	222	87	1	716	33	17	11	37	1.86

Tables:   1

The End!