genome.fa.s3432.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003432.1 Hibiscus syriacus cultivar Beakdansim tig00007231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76171

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5661--5719	24	2.5	24	85	0	91	30	23	25	20	1.98
11676--11799	31	3.9	31	82	6	108	30	16	16	36	1.91
11710--11797	31	2.9	31	88	5	117	29	19	17	34	1.94
17253--17339	31	2.8	30	76	8	88	28	19	14	36	1.92
22026--22483	57	8.0	57	86	2	643	36	18	9	36	1.83
26956--27087	41	3.2	40	82	3	165	34	21	19	24	1.96
26937--27087	61	2.5	60	82	5	169	33	22	19	24	1.97
26978--27087	20	5.4	20	86	2	166	37	20	20	20	1.95
26978--27109	40	3.3	39	84	7	158	37	20	20	21	1.95
27284--27349	22	3.0	22	88	0	96	25	39	13	21	1.90
27721--27768	20	2.4	20	89	0	69	12	16	25	45	1.82
27732--27770	20	2.0	20	100	0	78	10	15	20	53	1.70
29667--29821	33	4.4	33	71	20	125	43	19	20	16	1.88
29730--29797	20	3.3	21	81	4	77	39	20	19	20	1.92
29825--29916	40	2.5	37	80	17	104	26	19	20	33	1.96
29844--29950	20	5.3	20	94	0	151	23	18	22	35	1.96
29842--29960	20	5.9	20	88	2	73	22	18	21	36	1.95
30434--30538	21	5.0	21	74	3	95	21	36	19	22	1.95
30431--30541	42	2.6	42	78	5	118	21	36	18	22	1.95
31924--31959	14	2.6	14	90	0	54	30	0	22	47	1.52
32065--32118	14	3.5	14	73	22	54	44	20	24	11	1.83
32065--32140	33	2.3	34	97	2	145	44	19	23	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32078--32145	20	3.8	19	72	21	74	47	19	22	11	1.81
32157--32251	16	5.4	19	68	26	84	14	22	17	45	1.85
32155--32264	34	3.3	34	96	3	197	14	22	19	43	1.87
32256--32364	20	5.7	20	78	14	131	17	22	24	35	1.95
37713--37752	21	1.9	21	89	0	62	10	25	40	25	1.86
37735--37794	19	2.9	20	85	9	68	16	26	35	21	1.95
41597--41636	21	1.9	21	85	10	55	35	10	2	52	1.48
44410--44463	24	2.2	24	90	0	81	40	20	16	22	1.91
45285--45331	20	2.3	20	92	0	76	21	19	27	31	1.97
45318--45411	20	4.7	20	93	0	152	22	20	20	37	1.95
45284--45430	60	2.5	60	72	16	142	23	19	23	33	1.97
52656--52803	60	2.5	58	76	9	154	33	18	4	43	1.71
55336--55392	28	2.0	28	100	0	114	28	14	31	26	1.94
55824--55855	4	8.0	4	92	0	55	71	3	0	25	1.00
57832--57867	17	2.2	17	90	5	56	27	11	13	47	1.77
64703--64749	17	2.7	18	83	9	62	63	6	0	29	1.19

Tables:   1

The End!