genome.fa.s3436.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003436.1 Hibiscus syriacus cultivar Beakdansim tig00007243_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78460

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7427--7517	33	2.8	33	77	11	98	69	0	5	25	1.10
7496--7551	12	4.5	13	74	14	55	78	3	0	17	0.89
7427--7550	23	5.5	22	75	15	85	71	1	4	22	1.11
19255--19375	62	2.0	62	93	3	208	42	18	13	26	1.87
23486--23551	16	3.9	17	72	24	50	60	1	3	34	1.21
25190--25224	17	2.1	17	89	10	54	25	0	2	71	1.00
26537--26584	10	4.7	10	89	2	69	52	0	14	33	1.42
26537--26584	20	2.3	20	96	3	87	52	0	14	33	1.42
27078--27116	14	2.8	14	84	0	51	35	28	12	23	1.91
28182--28238	22	2.6	22	75	8	62	49	8	3	38	1.51
27990--28462	186	2.5	187	83	5	529	47	9	4	38	1.57
28554--28599	16	2.8	17	77	9	51	54	17	4	23	1.61
28291--28784	199	2.5	199	87	0	702	48	10	5	36	1.60
29605--29653	21	2.4	22	83	10	59	51	4	12	32	1.58
30346--30382	19	1.9	19	94	0	65	32	29	16	21	1.95
30408--30472	20	3.2	20	77	12	69	30	27	16	24	1.97
30408--30504	41	2.4	41	85	0	131	31	23	17	26	1.97
30647--30719	22	3.3	22	92	0	119	21	43	13	20	1.86
31109--31152	19	2.3	18	85	11	61	13	13	25	47	1.79
31168--31208	20	2.0	20	95	0	73	12	14	17	56	1.68
31172--31215	20	2.2	20	87	0	61	13	13	18	54	1.71
34000--34038	19	2.0	20	85	5	53	15	15	17	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34045--34111	20	3.3	20	81	8	82	19	20	22	37	1.95
34098--34141	20	2.2	20	91	0	70	15	13	20	50	1.78
34615--34722	21	5.1	21	76	4	101	18	36	19	25	1.95
34615--34737	42	2.9	42	81	2	140	20	36	18	24	1.95
34620--34737	21	5.6	21	72	6	87	21	36	18	23	1.95
36239--36315	39	2.0	40	82	7	95	46	24	14	14	1.81
36242--36315	20	3.8	20	78	3	78	48	24	13	13	1.78
36374--36553	20	9.6	20	76	13	168	27	16	21	34	1.95
36354--36447	40	2.5	37	86	8	120	30	21	18	29	1.97
36315--36488	34	4.9	36	72	15	130	25	19	20	33	1.96
36305--36553	54	4.6	54	76	13	237	26	17	21	34	1.96
36524--36805	139	2.0	140	95	0	512	44	14	13	28	1.82
40017--40066	20	2.5	20	93	0	82	24	22	30	24	1.99
40162--40207	19	2.4	19	85	3	56	21	17	30	30	1.96
40173--40209	19	1.9	19	94	0	65	21	16	29	32	1.95
41276--41311	17	2.1	17	94	0	63	33	0	16	50	1.46
41723--41753	14	2.2	14	94	0	53	16	0	0	83	0.64
44302--44337	6	6.0	6	93	0	63	16	19	16	47	1.83
50579--50671	42	2.2	42	94	0	159	25	21	21	31	1.98
50710--50734	13	1.9	13	100	0	50	32	24	20	24	1.98
50730--50806	22	3.6	21	68	15	59	28	18	20	32	1.96
50722--51054	42	8.1	42	65	14	176	29	18	21	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50727--51074	122	2.9	122	87	0	484	29	18	22	30	1.97
51429--51582	53	2.9	53	93	2	256	30	20	27	21	1.98
51560--51603	21	2.1	21	91	0	70	38	20	34	6	1.79
53243--53272	13	2.3	13	94	0	51	16	0	0	83	0.65
62215--62251	7	5.4	7	93	3	58	13	2	0	83	0.74
62215--62254	13	3.0	13	89	7	62	15	2	0	82	0.77
68568--68618	24	2.1	25	92	3	86	62	19	3	13	1.46
75297--75337	2	20.0	2	95	5	73	48	0	2	48	1.14

Tables:   1

The End!