genome.fa.s3437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003437.1 Hibiscus syriacus cultivar Beakdansim tig00007244_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63176

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75--139	19	3.4	19	84	0	85	16	21	32	29	1.96
5781--5879	37	2.6	37	84	4	119	32	23	26	18	1.97
7715--7812	20	4.8	20	88	2	133	22	6	14	57	1.59
12238--12292	27	2.0	27	82	6	67	52	3	5	38	1.42
14523--14694	36	5.0	35	77	18	130	47	3	4	44	1.40
14504--14591	36	2.3	38	73	9	92	48	3	5	42	1.43
14514--14842	65	4.9	65	74	17	189	47	3	5	44	1.42
14552--14606	27	2.0	27	92	0	92	41	3	5	49	1.43
14579--14797	37	6.1	35	77	17	184	46	3	5	45	1.41
14763--14828	29	2.3	29	86	0	87	46	3	4	45	1.38
14727--14860	65	2.1	63	87	5	189	47	2	5	44	1.40
14566--14885	141	2.3	139	80	8	332	45	3	5	45	1.42
14792--14885	36	2.6	37	83	6	120	45	3	4	46	1.38
14826--14892	26	2.5	26	83	9	73	46	2	4	46	1.38
14842--14895	26	2.1	25	89	6	81	42	3	5	48	1.44
17307--17346	16	2.5	16	100	0	80	22	7	40	30	1.81
21379--22097	84	8.7	83	80	5	663	30	23	21	25	1.99
21422--22097	165	4.1	162	82	4	816	30	23	21	25	1.99
21422--22071	249	2.6	247	83	3	855	30	23	21	25	1.99
21379--22097	329	2.2	328	87	3	1016	30	23	21	25	1.99
22795--23040	36	6.8	37	76	13	212	47	3	6	43	1.44
22894--23025	69	1.9	68	85	11	180	46	3	6	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22859--23131	106	2.7	103	81	10	310	48	3	5	42	1.42
22962--23060	38	2.6	38	78	14	105	47	4	7	41	1.49
22990--23117	66	2.0	64	87	3	184	48	3	6	42	1.44
23056--23148	36	2.6	36	83	8	116	49	2	5	43	1.37
24728--24764	6	6.2	6	93	0	56	37	0	0	62	0.96
26467--26500	15	2.3	15	89	0	50	38	0	11	50	1.39
26481--26541	31	1.9	32	83	9	81	44	0	9	45	1.37
26428--26523	46	2.1	45	82	5	113	39	1	12	46	1.49
27716--27746	16	1.9	16	93	0	53	54	3	41	0	1.16
36565--36632	30	2.3	30	84	0	82	42	19	5	32	1.75
42486--42529	23	1.9	23	90	9	72	77	0	15	6	0.97
49094--49160	29	2.3	29	92	0	107	38	14	10	35	1.81
52076--52125	21	2.3	21	82	3	64	54	2	4	40	1.31
52316--52417	25	4.2	24	78	8	82	54	0	1	43	1.11
52341--52409	2	34.5	2	88	5	104	50	0	1	47	1.09
52313--52417	18	6.0	18	75	13	85	54	0	1	43	1.11
52404--52464	31	1.9	33	83	6	81	45	0	9	44	1.37
52487--52522	3	12.0	3	100	0	72	33	0	0	66	0.92
52547--52585	21	1.9	20	94	5	69	33	30	15	20	1.94
52542--52585	21	2.0	23	83	16	58	31	29	18	20	1.96
53783--53845	2	32.0	2	83	15	78	44	0	4	50	1.23

Tables:   1

The End!