Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003438.1 Hibiscus syriacus cultivar Beakdansim tig00007245_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68310

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3733--3774
18
2.3
19
80
12
52
7
26
0
66
1.17
3741--3774
9
3.9
9
92
3
52
8
26
0
64
1.22
17824--17858
17
2.1
18
89
10
56
11
22
0
65
1.24
19356--19397
18
2.3
19
80
12
52
59
4
7
28
1.44
26098--26266
91
1.9
91
81
2
205
27
20
24
27
1.99
35606--35636
15
2.1
15
100
0
62
32
12
22
32
1.92
41514--41552
20
2.0
20
89
0
60
66
2
2
28
1.18
42863--42904
3
14.0
3
80
9
50
66
0
2
30
1.04
42854--42902
21
2.3
20
76
13
53
67
2
2
28
1.13
42863--42913
24
2.3
22
90
10
77
62
0
3
33
1.13
42905--42955
25
2.0
27
88
7
79
45
0
5
49
1.26
42905--43012
23
4.4
25
71
23
77
45
1
3
49
1.30
42937--43052
22
5.3
22
75
7
101
45
4
2
47
1.36
42936--43038
45
2.3
43
81
6
109
44
2
2
49
1.32
42969--43065
22
4.2
26
74
17
90
42
5
2
50
1.36
43437--43939
223
2.3
223
81
3
584
28
18
21
32
1.97
46823--46877
20
2.6
22
77
13
71
25
10
21
41
1.86
46941--46987
23
2.0
23
84
8
60
25
14
23
36
1.93
47936--47969
18
1.9
18
88
5
52
8
14
0
76
1.01
53518--53575
28
2.1
27
87
9
82
50
3
1
44
1.29
53513--53699
22
7.8
22
73
19
103
44
4
2
48
1.36
53543--53686
22
6.3
22
76
13
105
45
4
3
47
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53507--53700
26
7.9
25
73
19
133
44
4
3
47
1.37
66292--66329
20
1.9
20
89
10
60
57
5
0
36
1.21
66360--66388
14
2.1
14
100
0
58
44
6
6
41
1.58
66309--66561
38
6.7
38
80
11
281
43
8
3
43
1.53
66309--66561
77
3.3
76
88
7
356
43
8
3
43
1.53
66513--66541
14
2.1
14
100
0
58
44
6
6
41
1.58
66543--66592
14
3.4
14
75
8
55
42
0
2
56
1.11
66309--66556
115
2.2
114
83
9
305
44
8
4
42
1.54

Tables:   1

The End!