genome.fa.s3439.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003439.1 Hibiscus syriacus cultivar Beakdansim tig00007249_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57080

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1729--1772	7	6.7	7	82	12	58	70	0	2	27	0.99
1785--1816	2	16.0	2	100	0	64	50	0	0	50	1.00
2995--3051	4	14.0	4	83	7	62	70	1	5	22	1.17
2995--3055	25	2.5	25	84	7	72	70	1	4	22	1.15
2991--3056	29	2.2	29	86	7	89	71	1	4	22	1.13
2988--3051	20	3.2	20	80	12	60	70	1	4	23	1.15
3061--3396	37	8.9	37	87	6	435	48	7	1	42	1.38
3364--3419	24	2.4	23	82	5	67	44	8	0	46	1.34
9137--9220	35	2.5	35	83	13	104	58	8	5	27	1.51
10897--10960	23	2.8	23	80	0	92	31	26	25	17	1.97
11428--11486	2	29.5	2	100	0	118	49	0	0	50	1.00
14837--14908	28	2.6	29	81	16	89	63	2	0	33	1.08
14874--14907	17	1.9	18	88	5	52	64	5	0	29	1.17
15106--15204	51	1.9	51	81	0	117	20	32	27	20	1.97
16593--16677	34	2.5	34	96	0	152	15	24	24	35	1.94
16699--16752	22	2.5	22	96	0	99	35	18	33	12	1.89
16782--16825	23	1.9	23	100	0	88	9	25	40	25	1.84
16779--16832	23	2.4	22	84	9	81	11	24	42	22	1.85
17283--17641	172	2.1	173	91	1	578	39	5	18	37	1.73
19378--19408	6	5.2	6	96	0	53	19	0	61	19	1.35
19925--20747	37	22.1	37	80	13	425	49	5	3	40	1.45
19989--20780	23	33.3	22	68	18	269	49	5	3	40	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20494--20611	39	3.2	39	85	8	174	49	5	4	40	1.47
20129--20611	37	13.4	37	87	8	719	49	6	3	40	1.46
19908--20745	8	111.8	8	70	20	469	49	5	3	40	1.45
20301--20781	14	37.6	13	70	18	131	50	5	3	40	1.43
24185--24233	18	2.7	18	100	0	98	26	34	14	24	1.94
28230--28264	16	2.2	16	100	0	70	22	20	8	48	1.76
29969--30032	15	3.9	15	73	25	58	48	15	4	31	1.66
29948--30053	35	3.0	35	93	4	169	46	16	5	31	1.71
29987--30052	20	3.5	21	71	28	76	43	18	4	33	1.70
34600--34660	21	3.2	21	65	29	64	44	19	4	31	1.72
34560--34666	35	3.0	35	91	5	162	47	17	5	28	1.70
37255--37373	59	2.0	59	100	0	238	25	16	21	36	1.94
38539--38588	3	16.7	3	100	0	100	68	0	32	0	0.90
39018--39056	20	2.0	20	85	10	53	41	0	10	48	1.37
41917--42011	35	2.7	35	90	0	145	15	12	22	49	1.78
46982--47114	20	6.5	20	70	14	74	36	22	18	22	1.95
47045--47336	20	14.5	20	78	8	227	38	22	18	20	1.93
47651--47735	14	5.4	14	70	24	62	8	24	22	44	1.80
47638--47788	33	4.4	33	88	6	212	11	23	19	45	1.82
47638--47788	20	8.6	19	69	22	116	11	23	19	45	1.82
49796--49862	21	3.2	21	66	6	55	23	35	20	19	1.95
49744--49862	42	2.8	42	76	12	102	23	36	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51210--51245	14	2.6	14	90	0	54	30	0	22	47	1.52
51347--51448	19	5.4	19	95	0	177	48	16	19	15	1.82
51459--51617	19	8.8	19	76	14	167	14	20	16	47	1.82
51465--51596	33	3.8	33	86	6	156	14	20	17	47	1.82
51622--51676	20	2.8	20	88	0	74	25	20	21	32	1.97
53278--53331	24	2.2	24	93	0	90	40	20	18	20	1.91
53278--53345	24	2.8	24	84	0	64	38	20	17	23	1.93
54197--54425	20	11.4	20	80	6	223	20	17	21	39	1.92
54191--54461	40	6.7	40	86	2	276	20	18	22	39	1.93
54189--54461	20	13.6	20	80	4	199	20	18	21	39	1.93
54279--54483	40	5.0	41	86	5	161	20	18	23	38	1.94
54470--54518	20	2.5	20	83	6	64	14	20	22	42	1.88
56087--56132	20	2.3	20	96	0	83	47	26	10	15	1.78
56675--56728	21	2.7	19	78	10	63	9	18	22	50	1.75

Tables:   1

The End!