genome.fa.s344.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000344.1 Hibiscus syriacus cultivar Beakdansim tig00000635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189575

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186--261	36	2.1	37	85	4	102	51	3	1	43	1.28
4916--4961	21	2.1	22	92	4	76	17	23	6	52	1.68
13235--13261	13	2.1	13	100	0	54	22	25	14	37	1.93
14213--14249	2	18.5	2	100	0	74	51	0	0	48	1.00
15733--15759	14	1.9	14	100	0	54	59	22	11	7	1.56
19830--19891	20	3.0	21	83	11	74	14	20	0	64	1.28
20812--20849	2	19.0	2	100	0	76	0	50	0	50	1.00
23103--23140	20	2.0	20	89	5	60	36	0	0	63	0.95
23245--23318	34	2.2	33	92	4	130	24	17	5	52	1.65
25875--26028	69	2.2	69	90	4	249	39	14	24	21	1.91
32738--32771	17	1.9	18	88	5	52	55	0	0	44	0.99
33196--33226	16	1.9	16	93	0	53	51	6	0	41	1.27
34003--34038	18	2.0	18	100	0	72	11	22	16	50	1.77
36880--36928	21	2.3	21	96	0	89	44	24	16	14	1.84
41902--41948	22	2.1	22	96	0	85	27	23	25	23	2.00
46032--46076	6	7.2	6	80	9	54	33	6	0	60	1.23
52535--52607	35	2.1	35	100	0	146	21	5	10	61	1.49
59454--59518	31	2.1	31	88	5	96	20	20	24	35	1.96
59468--59530	31	2.1	31	87	3	92	19	20	28	31	1.97
59472--59543	30	2.4	31	83	2	83	22	19	27	30	1.98
60225--60265	21	2.0	21	90	0	64	24	21	29	24	1.99
65381--65443	31	2.1	31	84	3	83	20	20	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73147--73175	2	14.5	2	100	0	58	51	0	0	48	1.00
84519--84715	96	2.1	96	97	0	367	41	6	20	31	1.77
86847--86947	23	4.3	23	84	1	103	28	24	22	23	1.99
86954--87274	103	3.1	103	95	1	556	36	23	13	27	1.92
91029--91073	21	2.1	21	87	0	63	42	6	11	40	1.67
98516--98570	22	2.5	22	100	0	110	47	21	14	16	1.82
103861--103984	64	1.9	64	84	9	164	27	16	18	37	1.93
112176--112262	35	2.5	34	80	12	97	55	10	8	26	1.61
112477--112524	18	2.7	18	93	0	78	14	37	18	29	1.91
112475--112507	15	2.2	15	94	0	57	12	36	21	30	1.90
114399--114731	111	3.0	111	92	0	567	45	10	7	36	1.67
114859--114913	20	2.8	20	91	5	85	43	0	25	30	1.55
115319--115366	19	2.5	19	86	0	69	33	22	18	25	1.97
115397--115440	21	2.1	21	100	0	88	29	34	18	18	1.94
115455--115545	21	4.4	21	77	10	107	19	23	25	31	1.98
116074--116114	19	2.2	19	90	0	64	36	26	17	19	1.94
116146--116197	20	2.6	20	100	0	104	38	17	21	23	1.93
117127--117152	3	8.7	3	100	0	52	65	0	34	0	0.93
119512--119570	30	2.0	30	89	0	91	40	15	28	15	1.87
121664--121763	39	2.6	39	93	0	173	27	16	19	38	1.92
124837--124876	17	2.3	17	91	4	62	50	22	27	0	1.50
124844--124877	17	2.0	17	100	0	68	47	23	29	0	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125128--125178	22	2.3	22	93	0	84	45	0	3	50	1.20
126185--126225	21	1.9	22	95	5	75	21	17	19	41	1.90
128270--128309	20	2.0	20	85	0	53	5	30	0	65	1.14
129585--129625	21	1.9	22	95	5	75	26	19	14	39	1.90
130050--130079	15	2.0	15	100	0	60	40	6	0	53	1.27
133930--133993	24	2.7	24	82	0	74	9	9	20	60	1.54
135706--135766	23	2.7	23	89	0	95	18	26	27	27	1.98
136297--136378	3	27.3	3	100	0	164	32	0	0	67	0.91
150260--150299	18	2.2	18	100	0	80	35	22	0	42	1.54
164376--164456	21	4.0	21	80	12	98	24	29	20	24	1.99
164947--164974	2	14.0	2	100	0	56	50	50	0	0	1.00
164974--165013	2	20.0	2	100	0	80	50	0	0	50	1.00
165356--165394	21	1.9	20	85	15	53	25	30	30	12	1.93
167802--167858	3	19.0	3	79	0	51	1	8	63	26	1.34
167802--167835	12	2.8	12	90	0	59	0	8	58	32	1.29
167899--167938	12	3.4	12	86	3	55	22	0	65	12	1.26
172456--172560	28	3.5	30	77	7	97	54	1	12	31	1.49
174076--174126	26	2.0	26	84	0	66	45	9	9	35	1.71
175364--175415	26	2.1	26	82	10	65	59	5	0	34	1.21
176651--176685	14	2.5	14	95	0	61	25	48	5	20	1.71
183752--183818	34	2.0	34	90	0	107	43	10	17	28	1.82
187375--187456	21	3.9	21	90	0	128	26	24	21	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187372--187464	42	2.2	42	82	0	132	31	23	20	24	1.98
188037--188072	6	6.2	6	96	3	65	0	16	47	36	1.47
188161--188197	19	1.9	19	100	0	74	32	29	16	21	1.95

Tables:   1

The End!