Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003440.1 Hibiscus syriacus cultivar Beakdansim tig00007254_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104941
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:5223 original size:23 final size:23
Alignment explanation
Indices: 5196--5263 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
5186 GGCAAACATA
5196 TAAACGAATATGTTCGTGAACGT
1 TAAACGAATATGTTCGTGAACGT
** * * *
5219 TAAACGAGCATGTTTGCGAATGT
1 TAAACGAATATGTTCGTGAACGT
5242 TAAACGAATATGTTCGTGAACG
1 TAAACGAATATGTTCGTGAACG
5264 CTAACAAACC
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (23 bp):
TAAACGAATATGTTCGTGAACGT
Found at i:11977 original size:37 final size:36
Alignment explanation
Indices: 11933--12041 Score: 166
Period size: 35 Copynumber: 3.0 Consensus size: 36
11923 ATTTTTCATC
11933 AAACATTTACCAAACTTTGAAAAACTATTTTTCAAAG
1 AAACATTTACCAAACTTTGAAAAAC-ATTTTTCAAAG
* *
11970 AAACATTTACCAAACTTTGAAAACCA-TTTTCAAAA
1 AAACATTTACCAAACTTTGAAAAACATTTTTCAAAG
*
12005 AAACATTAACCAAACTTTGAAAAACATTTTTTCAAAG
1 AAACATTTACCAAACTTTGAAAAACA-TTTTTCAAAG
12042 TTGGTTGCCA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
35 32 0.49
36 1 0.02
37 32 0.49
ACGTcount: A:0.48, C:0.17, G:0.05, T:0.30
Consensus pattern (36 bp):
AAACATTTACCAAACTTTGAAAAACATTTTTCAAAG
Found at i:16616 original size:21 final size:21
Alignment explanation
Indices: 16592--16653 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
16582 TTCAAAGAAA
16592 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
16613 CATTT-TCAAA-----AAAA-
1 CATTTACCAAACTTTGAAAAC
16627 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
16648 CATTTA
1 CATTTA
16654 AAAAAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
14 5 0.16
15 8 0.25
20 8 0.25
21 11 0.34
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.31
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAC
Found at i:16666 original size:34 final size:35
Alignment explanation
Indices: 16542--16687 Score: 188
Period size: 35 Copynumber: 4.2 Consensus size: 35
16532 ATCTCATTAT
* *
16542 CATTTTC-AACAAACATCTACCAAACTTTGAAAAAC
1 CATTTTCAAAAAAACATTTACCAAACTTTG-AAAAC
* *
16577 TATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CA-TTTTCAAAAAAACATTTACCAAACTTTGAAAAC
16613 CATTTTCAAAAAAACATTTACCAAACTTTGAAAAC
1 CATTTTCAAAAAAACATTTACCAAACTTTGAAAAC
* * * *
16648 CA-TTTAAAAAAAATATTTACCAAACTTTAAAAAT
1 CATTTTCAAAAAAACATTTACCAAACTTTGAAAAC
16682 CATTTT
1 CATTTT
16688 TTCAAAGTTG
Statistics
Matches: 99, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
34 30 0.30
35 38 0.38
36 11 0.11
37 20 0.20
ACGTcount: A:0.47, C:0.18, G:0.03, T:0.32
Consensus pattern (35 bp):
CATTTTCAAAAAAACATTTACCAAACTTTGAAAAC
Found at i:18200 original size:2 final size:2
Alignment explanation
Indices: 18193--18229 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
18183 AACTCTATTA
18193 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
18230 ACTTAATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:22336 original size:30 final size:30
Alignment explanation
Indices: 22268--22336 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
22258 TTTAAATAAA
* ** *
22268 AATTAAATTATTATATTTATTATTATATAT
1 AATTAAATTATTATATTGAACATTATATAC
*
22298 AATCAAATTATTATATTGAACATT-TAATAC
1 AATTAAATTATTATATTGAACATTAT-ATAC
22328 AATTAAATT
1 AATTAAATT
22337 TAATTAAAGA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.48
Consensus pattern (30 bp):
AATTAAATTATTATATTGAACATTATATAC
Found at i:23360 original size:7 final size:7
Alignment explanation
Indices: 23347--23376 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
23337 GCACCTATTG
23347 ATTCTCC
1 ATTCTCC
*
23354 CTTCTCC
1 ATTCTCC
23361 ATTCTCC
1 ATTCTCC
23368 ATTCTCC
1 ATTCTCC
23375 AT
1 AT
23377 CTTCATCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.43
Consensus pattern (7 bp):
ATTCTCC
Found at i:25036 original size:23 final size:25
Alignment explanation
Indices: 24994--25044 Score: 72
Period size: 23 Copynumber: 2.1 Consensus size: 25
24984 GATGGGTTGA
24994 TAAAATTTTAAAACTTTTATT-TTT
1 TAAAATTTTAAAACTTTTATTATTT
25018 TAAAA-TTTAAAA-TTATTATTATTT
1 TAAAATTTTAAAACTT-TTATTATTT
25042 TAA
1 TAA
25045 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 2 0.08
23 12 0.48
24 11 0.44
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
TAAAATTTTAAAACTTTTATTATTT
Found at i:31162 original size:60 final size:60
Alignment explanation
Indices: 31088--31219 Score: 183
Period size: 60 Copynumber: 2.2 Consensus size: 60
31078 GTGTTGTCTC
* * **
31088 GTTATACCACTGAACTCTCAATCTTGTCAATTATAACACTAAACTTTAATTTTTGTTTTA
1 GTTATACCATTGAACTCTCAATCTTATCAATTATAACACTAAACTTTAATTTACGTTTTA
* * * * *
31148 GTTATACAATTGAACTTTTAATTTTATCAATTATAACACTAAACTTTAATTTACGTTTTT
1 GTTATACCATTGAACTCTCAATCTTATCAATTATAACACTAAACTTTAATTTACGTTTTA
31208 GTTATACCATTG
1 GTTATACCATTG
31220 CACCGTTAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.45
Consensus pattern (60 bp):
GTTATACCATTGAACTCTCAATCTTATCAATTATAACACTAAACTTTAATTTACGTTTTA
Found at i:42134 original size:24 final size:22
Alignment explanation
Indices: 42095--42139 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
42085 ACAATACAAG
*
42095 AAAAATATTAAAAAAACATAAT
1 AAAAAAATTAAAAAAACATAAT
*
42117 AAAAAAATTCAAATAAAATATAA
1 AAAAAAATT-AAA-AAAACATAA
42140 ATATGAACAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 3 0.16
24 8 0.42
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (22 bp):
AAAAAAATTAAAAAAACATAAT
Found at i:43276 original size:23 final size:23
Alignment explanation
Indices: 43242--43362 Score: 136
Period size: 23 Copynumber: 5.3 Consensus size: 23
43232 CAATGAAATT
43242 TTTCTTCTTCTTCCATAAACTCA
1 TTTCTTCTTCTTCCATAAACTCA
** * *
43265 TTGATTCTTCTTCCATATACAT-G
1 TTTCTTCTTCTTCCATAAAC-TCA
* *
43288 TTTCTTCTTTTTCCATAAACCCA
1 TTTCTTCTTCTTCCATAAACTCA
* *
43311 TTTTTTCTTCTTTCATAAACTCA
1 TTTCTTCTTCTTCCATAAACTCA
* *
43334 TTTCTTCTTCTTCAATAAACACA
1 TTTCTTCTTCTTCCATAAACTCA
43357 TTTCTT
1 TTTCTT
43363 AATCTTCAAT
Statistics
Matches: 78, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
23 77 0.99
24 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.02, T:0.50
Consensus pattern (23 bp):
TTTCTTCTTCTTCCATAAACTCA
Found at i:43368 original size:23 final size:23
Alignment explanation
Indices: 43325--43372 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
43315 TTCTTCTTTC
* **
43325 ATAAACTCATTTCTTCTTCTTCA
1 ATAAACACATTTCTTAATCTTCA
43348 ATAAACACATTTCTTAATCTTCA
1 ATAAACACATTTCTTAATCTTCA
43371 AT
1 AT
43373 TCGTATGAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAAACACATTTCTTAATCTTCA
Found at i:50014 original size:25 final size:27
Alignment explanation
Indices: 49984--50050 Score: 84
Period size: 25 Copynumber: 2.5 Consensus size: 27
49974 TTTAATTATA
**
49984 AAATATAAAAATA-TTCAAA-AAAATT
1 AAATATAAAAATACTAAAAATAAAATT
50009 AAATATAAAAATACTAAAAATAAAATT
1 AAATATAAAAATACTAAAAATAAAATT
50036 AAATAACTAAAAATA
1 AAAT-A-TAAAAATA
50051 AATATATATT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
25 13 0.36
26 4 0.11
27 10 0.28
28 1 0.03
29 8 0.22
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.25
Consensus pattern (27 bp):
AAATATAAAAATACTAAAAATAAAATT
Found at i:50046 original size:20 final size:22
Alignment explanation
Indices: 49981--50076 Score: 79
Period size: 25 Copynumber: 4.1 Consensus size: 22
49971 TATTTTAATT
*
49981 ATAAAATATAAAAATATTCAAAAAA
1 ATAAAATATAAAAATA--C-TAAAA
*
50006 ATTAAATATAAAAATACTAAAA
1 ATAAAATATAAAAATACTAAAA
*
50028 ATAAAAT-TAAATA-ACTAAAA
1 ATAAAATATAAAAATACTAAAA
*
50048 ATAAATATATATTAAAGATTCTAAAA
1 ATAAA-ATATA--AAA-ATACTAAAA
50074 ATA
1 ATA
50077 CTATTAAATT
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
20 12 0.20
21 7 0.12
22 12 0.20
23 1 0.02
24 2 0.03
25 16 0.27
26 9 0.15
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (22 bp):
ATAAAATATAAAAATACTAAAA
Found at i:50048 original size:15 final size:14
Alignment explanation
Indices: 50002--50054 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
49992 AAATATTCAA
50002 AAAAATTAAAT-AT
1 AAAAATTAAATAAT
50015 AAAAATACTAAA-AAT
1 AAAAAT--TAAATAAT
50030 -AAAATTAAATAACT
1 AAAAATTAAATAA-T
50044 AAAAA-TAAATA
1 AAAAATTAAATA
50055 TATATTAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
12 4 0.12
13 8 0.24
14 12 0.35
15 10 0.29
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.25
Consensus pattern (14 bp):
AAAAATTAAATAAT
Found at i:63179 original size:23 final size:23
Alignment explanation
Indices: 63153--63200 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
63143 ATAAAGTACA
*
63153 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
63176 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
63199 AT
1 AT
63201 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:64068 original size:404 final size:405
Alignment explanation
Indices: 63320--64933 Score: 3102
Period size: 405 Copynumber: 4.0 Consensus size: 405
63310 ACTTTAACAG
63320 TGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATT
1 TGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATT
*
63385 GTTTTGATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATATATACCGTAACGTAAAA
66 GTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATATATACCGTAACGTAAAA
63450 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTT-AAACTCACTCAAAAGATAACCTT
131 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
63514 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTAT-AAAAGGATAGACACTTTACAA
196 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAA
63578 TATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATT
261 TATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATT
63643 GAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTC
326 GAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTC
63708 AATATTTTTTAAGTA
391 AATATTTTTTAAGTA
63723 TGTTTCATGTTTTCCACCTAC-ATATTGATTTAATAATTTCATTTGCAC-AAAAATTATTTGATT
1 TGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATT
63786 G-TTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATACCGTAACGTA
66 GTTTTTATATTTTATAAAATATTATTTAGAATTTTAAA-TT--TAATAATATATACCGTAACGTA
63850 AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAAC
128 AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAAC
63915 CTTAAATTAATGTTTTCCACAGTG-AAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTA
193 CTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTA
63979 CAATATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
258 CAATATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
64044 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGT
323 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGT
64109 TTCAATATTTTTTAAGTA
388 TTCAATATTTTTTAAGTA
64127 TGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATT
1 TGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATT
64192 GTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATATATACCGTAACGTAAAA
66 GTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATATATACCGTAACGTAAAA
64257 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
131 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
64322 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAA
196 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAA
64387 TATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATT
261 TATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATT
64452 GAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTC
326 GAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTC
64517 AATATTTTTTAAGTA
391 AATATTTTTTAAGTA
64532 TGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATT
1 TGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATT
64597 GTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATACCGTAACGTAAA
66 GTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAAT-ATATACCGTAACGTAAA
64662 AAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCT
130 AAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCT
64727 TAAATTAATGTTTTCCACAGTG-AAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACA
195 TAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACA
64791 ATATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATAT
260 ATATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATAT
64856 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAA-ACTTATGTAATTTATGT
325 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGA--TATGTAATTTATGT
64920 TTCAAT-TTTTTTAA
388 TTCAATATTTTTTAA
64934 CAGTGTACTG
Statistics
Matches: 1198, Mismatches: 1, Indels: 22
0.98 0.00 0.02
Matches are distributed among these distances:
400 35 0.03
401 18 0.02
402 27 0.02
403 108 0.09
404 343 0.29
405 489 0.41
406 142 0.12
407 36 0.03
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (405 bp):
TGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATT
GTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATATATACCGTAACGTAAAA
AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAA
TATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATT
GAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTC
AATATTTTTTAAGTA
Found at i:67801 original size:183 final size:184
Alignment explanation
Indices: 67391--68099 Score: 1334
Period size: 183 Copynumber: 3.9 Consensus size: 184
67381 TTTTAAATGG
* *
67391 TATGGACATAAAGTACCGACACAATATTATAAAGTGTCG-TATAGGTTGTAGACCTATTCGCTCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
67455 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
67520 GATGTGTAAAATGTCGACACTTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACAC-TTTTTTAAATCGTATCGACACATTTTTCTTCCAA
67575 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
67640 TAAAACCGGTATA-TTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
67704 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
*
67758 TATGGATATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
67823 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
67888 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
*
67942 TATGGATATAAAGTACCGACAC-ATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
*
68006 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
*
68071 GATGTGTAAAATGTCGACACTTTTGTAAA
131 GATGTGTAAAATGTCGACACTTTTTTAAA
68100 AAGTGTCCAT
Statistics
Matches: 518, Mismatches: 5, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
183 245 0.47
184 236 0.46
185 37 0.07
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (184 bp):
TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
Found at i:68071 original size:367 final size:367
Alignment explanation
Indices: 67391--68099 Score: 1332
Period size: 367 Copynumber: 1.9 Consensus size: 367
67381 TTTTAAATGG
* *
67391 TATGGACATAAAGTACCGACACAATATTATAAAGTGTCGTATAGGTTGTAGACCTATTCGCTCAT
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGTATAGGTTGTAGACCTATTCGCGCAT
67456 AAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCG
66 AAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCG
67521 ATGTGTAAAATGTCGACACTTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAA
131 ATGTGTAAAATGTCGACACTTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAA
67586 AGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTA
196 AGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTA
67651 TATTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAAT
261 TATTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAAT
*
67716 GTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
326 GTCGACACTTTTGTAAATCGTATCGACACATTTTTCTTCCAA
*
67758 TATGGATATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCG-TATAGGTTGTAGACCTATTCGCGCA
67823 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
65 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
*
67888 GATGTGTAAAATGTCGACAC-TTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGATATA
130 GATGTGTAAAATGTCGACACTTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATA
*
67952 AAGTACCGACAC-ATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGT
195 AAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGT
68016 ATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAA
260 ATA-TTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAA
68081 ATGTCGACACTTTTGTAAA
324 ATGTCGACACTTTTGTAAA
68100 AAGTGTCCAT
Statistics
Matches: 334, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
366 54 0.16
367 171 0.51
368 109 0.33
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (367 bp):
TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGTATAGGTTGTAGACCTATTCGCGCAT
AAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCG
ATGTGTAAAATGTCGACACTTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAA
AGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTA
TATTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAAT
GTCGACACTTTTGTAAATCGTATCGACACATTTTTCTTCCAA
Found at i:68113 original size:21 final size:21
Alignment explanation
Indices: 68089--68141 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
68079 AAATGTCGAC
*
68089 ACTTTTGTAAAAAGTG-TCCAT
1 ACTTTTATAAAAAG-GATCCAT
*
68110 ACTTTTATAAAAAGGATCGAT
1 ACTTTTATAAAAAGGATCCAT
*
68131 ACTTTTTTAAA
1 ACTTTTATAAA
68142 GATATGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (21 bp):
ACTTTTATAAAAAGGATCCAT
Found at i:69565 original size:3 final size:3
Alignment explanation
Indices: 69557--69630 Score: 76
Period size: 3 Copynumber: 24.7 Consensus size: 3
69547 ACTTGTTTGG
* * * **
69557 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GCC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * *
69605 AGC TTC ATC GTC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
69631 TGTCATCTTC
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.26, C:0.34, G:0.05, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:69624 original size:42 final size:42
Alignment explanation
Indices: 69565--69655 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
69555 GGATCATCAT
*
69565 CTTCATCATCATCATCATCATCGTCATCATCTTCATCGCCAG
1 CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
* ** * *
69607 CTTCATCGTCATCATCATCATCATTGTCATCTTCATTGTCAG
1 CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
69649 CTTCATC
1 CTTCATC
69656 TTCTGCGACC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.22, C:0.33, G:0.08, T:0.37
Consensus pattern (42 bp):
CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
Found at i:69636 original size:9 final size:9
Alignment explanation
Indices: 69570--69637 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 9
69560 ATCATCTTCA
*
69570 TCATCATCA
1 TCATCATCG
69579 TCATCATCG
1 TCATCATCG
*
69588 TCATCATCT
1 TCATCATCG
**
69597 TCATCGCCAG
1 TCATCATC-G
*
69607 -CTTCATCG
1 TCATCATCG
*
69615 TCATCATCA
1 TCATCATCG
*
69624 TCATCATTG
1 TCATCATCG
69633 TCATC
1 TCATC
69638 TTCATTGTCA
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
8 1 0.02
9 44 0.98
ACGTcount: A:0.24, C:0.34, G:0.07, T:0.35
Consensus pattern (9 bp):
TCATCATCG
Found at i:69658 original size:6 final size:6
Alignment explanation
Indices: 69561--69658 Score: 56
Period size: 6 Copynumber: 16.3 Consensus size: 6
69551 GTTTGGATCA
* * * * * * * *
69561 TCATCT TCATCA TCATCA TCATCA TCGTCA TCATCT TCATCG CCAGCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* * * *
69609 TCATCG TCATCA TCATCA TCAT-T GTCATCT TCAT-T GTCAGCT TCATCT
1 TCATCT TCATCT TCATCT TCATCT -TCATCT TCATCT -TCATCT TCATCT
69657 TC
1 TC
69659 TGCGACCGAT
Statistics
Matches: 73, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
5 1 0.01
6 70 0.96
7 2 0.03
ACGTcount: A:0.21, C:0.33, G:0.07, T:0.39
Consensus pattern (6 bp):
TCATCT
Found at i:71909 original size:199 final size:199
Alignment explanation
Indices: 71020--72632 Score: 3010
Period size: 199 Copynumber: 8.1 Consensus size: 199
71010 TTTAAATTAG
71020 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCAT-AAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
71084 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
71149 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCT-GTAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
71213 AAAA
196 AAAA
71217 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
71282 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
71347 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAA
131 CGACAC-TTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAA
71412 AAAAA
195 AAAAA
*
71417 TATCGACACAGAC--TATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
71480 ATTGTACCGGTTAGATT-AAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
71544 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCT-GTAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
71608 AAAA
196 AAAA
*
71612 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCAGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
71677 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
71742 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
71807 AAAA
196 AAAA
71811 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
71876 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
71941 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
72006 AAAA
196 AAAA
72010 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
72075 ATTGTACCGGTTAGATTGAAAAATTACATATTACATT-T-CTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
72138 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
72203 AAAA
196 AAAA
72207 TATCGACA-AAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
72271 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
72336 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
72401 AAAA
196 AAAA
72405 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
72470 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
72535 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTATGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
72600 AAAA
196 AAAA
*
72604 TATCGACACAAACTATATTAGTATCGACA
1 TATCGACACAAACTATATTAGTGTCGACA
72633 TGACCCTTAA
Statistics
Matches: 1385, Mismatches: 21, Indels: 18
0.97 0.01 0.01
Matches are distributed among these distances:
195 20 0.01
196 144 0.10
197 275 0.20
198 356 0.26
199 570 0.41
200 20 0.01
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
AAAA
Found at i:72221 original size:594 final size:595
Alignment explanation
Indices: 71020--72632 Score: 3015
Period size: 594 Copynumber: 2.7 Consensus size: 595
71010 TTTAAATTAG
71020 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCAT-AAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
71084 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
71149 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCT-GTAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
71213 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
*
71278 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
* *
71343 GGATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
326 GGATCGACAC-TTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTG
*
71408 GGAAAAAAATATCGACACAGAC--TATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAA
390 GGAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAA
71471 ACCGGTATAATTGTACCGGTTAGATTAAAAATTACATATTACATTATACTTTTGGGTTCGATGAT
455 ACCGGTATAATTGTACCGGTTAGATTAAAAATTACATATTACATTATACTTTTGGGTTCGATGAT
71536 TTTGGGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATT
520 TTTGGGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATT
*
71601 CTGTAAAAAAA
585 CTGGAAAAAAA
*
71612 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCAGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
71677 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
71742 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
71807 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
*
71872 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
71937 GGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGG
72002 GAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAA
391 GAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAA
72067 CCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATT-T-CTTTTGGGTTCGATGAT
456 CCGGTATAATTGTACCGGTTAGATT-AAAAATTACATATTACATTATACTTTTGGGTTCGATGAT
72130 TTTGGGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATT
520 TTTGGGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATT
72195 CTGGGAAAAAAA
585 CT-GGAAAAAAA
72207 TATCGACA-AAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
* *
72271 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
72336 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
72401 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
72466 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
*
72531 GGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTATGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGG
* *
72596 AAAAAAAATATCGACACAAACTATATTAGTATCGACA
391 GAAAAAAATATCGACACAAACTATATTAGTGTCGACA
72633 TGACCCTTAA
Statistics
Matches: 996, Mismatches: 19, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
592 53 0.05
593 205 0.21
594 635 0.64
595 84 0.08
596 19 0.02
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (595 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
GGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGG
GAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAA
CCGGTATAATTGTACCGGTTAGATTAAAAATTACATATTACATTATACTTTTGGGTTCGATGATT
TTGGGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTC
TGGAAAAAAA
Found at i:72321 original size:395 final size:397
Alignment explanation
Indices: 71020--72632 Score: 3006
Period size: 395 Copynumber: 4.1 Consensus size: 397
71010 TTTAAATTAG
71020 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCAT-AAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
71084 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
71149 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGTAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
71214 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGT
196 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGT
71279 ATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
261 ATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
*
71344 GATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGG
326 GATCGACAC-TTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGG
71409 GAAAAAAA
390 GAAAAAAA
*
71417 TATCGACACAGAC--TATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
71480 ATTGTACCGGTTAGATT-AAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
71544 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGTAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
*
71609 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCAGT
196 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGT
71674 ATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
261 ATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
*
71739 GATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGG
326 GATCGACACTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGGG
71804 AAAAAAA
391 AAAAAAA
71811 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
71876 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
71941 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCT-GGAAA
72006 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
195 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
*
72071 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATT-T-CTTTTGGGTTCGATGATTTTG
260 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
*
72134 GGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGG
325 GGATCGACACTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGG
72199 GAAAAAAA
390 GAAAAAAA
72207 TATCGACA-AAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
72271 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
72336 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCT-GGAAA
72401 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
195 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
*
72466 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
260 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
* *
72531 GGATCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTATGG
325 GGATCGACACTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGG
*
72596 AAAAAAAA
390 GAAAAAAA
*
72604 TATCGACACAAACTATATTAGTATCGACA
1 TATCGACACAAACTATATTAGTGTCGACA
72633 TGACCCTTAA
Statistics
Matches: 1196, Mismatches: 12, Indels: 15
0.98 0.01 0.01
Matches are distributed among these distances:
394 75 0.06
395 580 0.48
396 196 0.16
397 218 0.18
398 127 0.11
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (397 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGT
ATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
GATCGACACTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGGG
AAAAAAA
Found at i:72740 original size:19 final size:19
Alignment explanation
Indices: 72713--72757 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
72703 TATTCACATA
*
72713 AAAAATATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
72732 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
72751 AAAATTA
1 AAAATTA
72758 ACTCGACATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:74585 original size:33 final size:33
Alignment explanation
Indices: 74548--74613 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
74538 CATCTTAATA
*
74548 TCACCCCTTAACACCGAAACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
***
74581 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
74614 CCTTCTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.45, G:0.02, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCGAAACTTCTTTCACCACT
Found at i:76929 original size:17 final size:18
Alignment explanation
Indices: 76907--76949 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
76897 ATATGTCCGG
76907 TATCATT-TTACCGGTTT
1 TATCATTATTACCGGTTT
76924 TATCATTTTATTACCGGTTT
1 TATCA--TTATTACCGGTTT
76944 TATCAT
1 TATCAT
76950 ATTTTTACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 5 0.22
18 1 0.04
19 2 0.09
20 15 0.65
ACGTcount: A:0.21, C:0.16, G:0.09, T:0.53
Consensus pattern (18 bp):
TATCATTATTACCGGTTT
Found at i:76957 original size:20 final size:19
Alignment explanation
Indices: 76912--76957 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
76902 TCCGGTATCA
76912 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
76931 TTATTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
76952 TTTTAC
1 TTTTAC
76958 TGTTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.20, C:0.15, G:0.09, T:0.57
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:77104 original size:20 final size:20
Alignment explanation
Indices: 77078--77123 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
77068 CACTTTTAAA
77078 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
77097 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
77118 TTTACC
1 TTTACC
77124 TGGTATATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:77608 original size:226 final size:222
Alignment explanation
Indices: 77187--77627 Score: 717
Period size: 226 Copynumber: 2.0 Consensus size: 222
77177 TTAAAACTGC
77187 TTTTAAAGTTATGTAATTATGTTTCAATTTATTTAATAGTGTCATGTTTTCCACCTACAATATTA
1 TTTTAAAGTTATGTAATTATGTTTCAATTTATTTAATAGTGTCATGTTTTCCACCTACAATATTA
**
77252 ATTAATAATTTAATTTACACAAAATTTTATTTGATTGTTTTGATATTTTATAAAATATTATTTAG
66 ATTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAG
* *
77317 AATTTAAATTTAACAATATTAACCAAATATAATAAAATATGTTTTCAACAGTGAAATAAGTATGG
131 AATTTAAATTTAACAATATTAACCAAAGATAATAAAATATATTTTCAACAGTGAAATAAGTATGG
*
77382 ACACTTTTATAAAAATGATATATACTT
196 ACACTTTTATAAAAAGGATATATACTT
77409 TTTTGAAAGTTATGTAATTTATGTTTCAATTT-TTTAATAGTGTTTCATGTTTTCCACCTACAAT
1 TTTT-AAAGTTATGTAA-TTATGTTTCAATTTATTTAATAGTG--TCATGTTTTCCACCTACAAT
*
77473 ATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTAT-AAATATTA
62 ATTAA-TTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTA
* *
77537 TTTAGATTTTAAATTTAACAATATTAACTAAAGATAATAATAAATATATTTTC-ACAGTGAAATA
126 TTTAGAATTTAAATTTAACAATATTAACCAAAGATAAT-A-AAATATATTTTCAACAGTGAAATA
*
77601 AGTATGGATACTTTTATAAAAAGGATA
189 AGTATGGACACTTTTATAAAAAGGATA
77628 GATAATTTAC
Statistics
Matches: 203, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
222 4 0.02
223 22 0.11
224 14 0.07
225 68 0.33
226 84 0.41
227 11 0.05
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.45
Consensus pattern (222 bp):
TTTTAAAGTTATGTAATTATGTTTCAATTTATTTAATAGTGTCATGTTTTCCACCTACAATATTA
ATTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAG
AATTTAAATTTAACAATATTAACCAAAGATAATAAAATATATTTTCAACAGTGAAATAAGTATGG
ACACTTTTATAAAAAGGATATATACTT
Found at i:85691 original size:29 final size:29
Alignment explanation
Indices: 85657--85715 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
85647 CCTAAATTAA
85657 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
85686 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
85715 T
1 T
85716 AGGTAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (29 bp):
TTTGATGTCATTGCTTACATCAATTTAGT
Found at i:90378 original size:29 final size:29
Alignment explanation
Indices: 90344--90402 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
90334 CCTAAATTAA
90344 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
90373 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
90402 T
1 T
90403 AGGTGAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (29 bp):
TTTGATGTCATTGCTTACATCAATTTAGT
Found at i:92856 original size:6 final size:6
Alignment explanation
Indices: 92840--92877 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
92830 ATTATATTTT
92840 TAATT- TAATTC TAATTC TAATTC TAATTC TAATT- TAAT
1 TAATTC TAATTC TAATTC TAATTC TAATTC TAATTC TAAT
92878 AAATTTAACC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 9 0.28
6 23 0.72
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (6 bp):
TAATTC
Found at i:101186 original size:17 final size:19
Alignment explanation
Indices: 101160--101199 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
101150 GTCTGTTCTC
101160 TATA-AATTTAAA-A-TTT
1 TATATAATTTAAATAGTTT
101176 TATATAATTTAAATAGTTT
1 TATATAATTTAAATAGTTT
101195 TATAT
1 TATAT
101200 TTTTATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.19
17 8 0.38
18 1 0.05
19 8 0.38
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
TATATAATTTAAATAGTTT
Found at i:104056 original size:41 final size:40
Alignment explanation
Indices: 104011--104144 Score: 142
Period size: 41 Copynumber: 3.3 Consensus size: 40
104001 GATTCTGACT
* * *
104011 ATCGCATTGCGATTTTCCTAATTCGCAATGCGAATACGTAA
1 ATCGCAATGCGA-TTTCGTAAATCGCAATGCGAATACGTAA
* * * *
104052 ATCGCAACGCGAATTTGGAAAATCGCAATGCGATTACGTAA
1 ATCGCAATGCG-ATTTCGTAAATCGCAATGCGAATACGTAA
* * * *
104093 ATCGCAATACGAATACGTAAATCGCAATGCGAATATGTAA
1 ATCGCAATGCGATTTCGTAAATCGCAATGCGAATACGTAA
*
104133 ATCACAATGCGA
1 ATCGCAATGCGA
104145 ATCTGACTAT
Statistics
Matches: 75, Mismatches: 17, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
40 33 0.44
41 41 0.55
42 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.25
Consensus pattern (40 bp):
ATCGCAATGCGATTTCGTAAATCGCAATGCGAATACGTAA
Found at i:104057 original size:61 final size:60
Alignment explanation
Indices: 103992--104124 Score: 160
Period size: 61 Copynumber: 2.2 Consensus size: 60
103982 ATTTCCAGAT
** * * * *
103992 TCGCAACGCGATTCT-GACTATCGCATTGCGATTTTCCTAATTCGCAATGCGAATACGTAAA
1 TCGCAACGCGATT-TGGAAAATCGCAATGCGA-TTACCTAAATCGCAATACGAATACGTAAA
*
104053 TCGCAACGCGAATTTGGAAAATCGCAATGCGATTACGTAAATCGCAATACGAATACGTAAA
1 TCGCAACGCG-ATTTGGAAAATCGCAATGCGATTACCTAAATCGCAATACGAATACGTAAA
*
104114 TCGCAATGCGA
1 TCGCAACGCGA
104125 ATATGTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
60 1 0.02
61 45 0.73
62 16 0.26
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (60 bp):
TCGCAACGCGATTTGGAAAATCGCAATGCGATTACCTAAATCGCAATACGAATACGTAAA
Found at i:104058 original size:20 final size:20
Alignment explanation
Indices: 104033--104146 Score: 147
Period size: 20 Copynumber: 5.7 Consensus size: 20
104023 TTTTCCTAAT
104033 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* ** *
104053 TCGCAACGCGAATTTGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
104074 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
*
104094 TCGCAATACGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
104114 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATACGTAAA
*
104134 TCACAATGCGAAT
1 TCGCAATGCGAAT
104147 CTGACTATCG
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
20 64 0.81
21 15 0.19
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:104157 original size:40 final size:39
Alignment explanation
Indices: 104033--104159 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
104023 TTTTCCTAAT
* *
104033 TCGCAATGCGAATACGTAAATCGCAACGCGAATTTGGAAAA
1 TCGCAATGCGAATACGTAAATCGCAATGCGAATCT-G-AAA
* *
104074 TCGCAATGCGATTACGTAAATCGCAATACGAATAC-GTAAA
1 TCGCAATGCGAATACGTAAATCGCAATGCGAAT-CTG-AAA
* * *
104114 TCGCAATGCGAATATGTAAATCACAATGCGAATCTGACTA
1 TCGCAATGCGAATACGTAAATCGCAATGCGAATCTGA-AA
104154 TCGCAA
1 TCGCAA
104160 CGAGATTTTG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
39 2 0.03
40 41 0.56
41 30 0.41
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (39 bp):
TCGCAATGCGAATACGTAAATCGCAATGCGAATCTGAAA
Found at i:104173 original size:20 final size:20
Alignment explanation
Indices: 104146--104199 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
104136 ACAATGCGAA
104146 TCTGACTATCGCAACGAGAT
1 TCTGACTATCGCAACGAGAT
* *
104166 TTTGACTATCGCAACGATAT
1 TCTGACTATCGCAACGAGAT
104186 TCTGACTATCGCAA
1 TCTGACTATCGCAA
104200 TACTGAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (20 bp):
TCTGACTATCGCAACGAGAT
Done.