genome.fa.s3441.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003441.1 Hibiscus syriacus cultivar Beakdansim tig00007255_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84559

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14369--14435	34	1.9	34	82	14	84	20	11	19	47	1.81
37138--37189	21	2.5	21	84	3	70	40	19	23	17	1.91
37178--37231	20	2.7	20	97	0	99	31	24	18	25	1.97
37157--37291	61	2.2	61	80	2	146	34	25	18	22	1.96
37240--37287	20	2.4	20	85	0	60	27	31	18	22	1.97
37849--37885	19	1.9	19	94	0	65	56	24	16	2	1.53
37894--38031	19	7.7	19	71	18	98	12	22	21	43	1.86
37919--38006	33	2.6	33	92	1	140	11	25	25	38	1.89
37974--38031	20	2.9	20	80	10	64	13	24	18	43	1.87
40032--40154	42	2.9	42	80	2	122	22	36	17	22	1.95
40088--40154	21	3.2	21	66	6	55	23	35	20	19	1.95
41513--41548	14	2.6	14	95	0	63	30	0	25	44	1.54
41727--41843	19	6.7	19	73	18	119	12	23	18	45	1.84
41727--41843	52	2.2	52	95	0	207	12	23	18	45	1.84
41744--41863	52	2.3	52	88	1	177	15	22	19	43	1.87
43703--43812	3	36.7	3	92	0	184	34	2	0	62	1.09
43808--43849	11	3.7	11	90	6	66	54	4	0	40	1.21
50848--50881	9	3.7	9	88	7	50	88	8	2	0	0.62
53032--53574	83	6.6	83	97	0	941	27	13	21	37	1.91
56238--56314	22	3.5	21	83	13	93	33	12	14	38	1.84
56723--57274	113	4.8	113	84	4	660	38	13	19	28	1.90
57214--57322	42	2.7	41	92	2	175	46	11	22	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57321--57536	119	1.8	115	81	9	267	38	17	18	24	1.92
57698--57797	3	33.3	3	91	0	164	34	4	0	62	1.14
57698--57797	27	3.7	27	98	0	191	34	4	0	62	1.14
57793--57834	11	3.7	11	90	6	66	54	4	0	40	1.21
58233--58258	10	2.6	10	100	0	52	88	0	11	0	0.52
60295--60319	12	2.1	12	100	0	50	0	28	0	72	0.86
60506--60552	24	2.0	24	91	0	76	34	17	19	29	1.94
60510--60561	24	2.2	24	82	0	59	36	19	17	26	1.94
63102--63168	19	3.5	19	79	4	80	38	23	22	14	1.92
63157--63214	14	3.9	14	79	16	71	48	25	17	8	1.75
63149--63219	32	2.2	33	97	2	135	47	23	19	8	1.77
63226--63341	19	6.6	19	71	19	74	13	20	21	43	1.86
63248--63305	14	3.9	14	75	16	62	10	17	24	48	1.78
63231--63321	32	2.8	33	91	3	157	12	18	21	47	1.81
63308--63352	20	2.2	20	96	0	81	17	22	20	40	1.92
63842--63886	18	2.5	18	88	0	72	13	15	44	26	1.83
65206--65248	20	2.2	20	95	0	77	53	18	18	9	1.70
65513--65556	22	2.0	22	95	0	79	18	15	45	20	1.85
65744--65816	20	3.7	20	92	0	119	26	19	28	26	1.98
65724--65861	41	3.4	41	76	2	107	23	16	24	35	1.95
65847--65939	20	4.5	21	78	4	100	17	24	18	39	1.91
65847--65939	41	2.3	41	100	0	186	17	24	18	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68438--68849	124	3.3	123	78	7	420	25	18	21	33	1.96
68930--68980	26	1.9	27	84	4	68	35	7	17	39	1.79
78545--78595	14	3.3	15	81	15	59	74	17	0	7	1.05
81759--81806	23	2.1	23	85	11	64	58	12	2	27	1.46

Tables:   1

The End!