Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003444.1 Hibiscus syriacus cultivar Beakdansim tig00007265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65928
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:143 original size:21 final size:21
Alignment explanation
Indices: 119--322 Score: 109
Period size: 21 Copynumber: 9.9 Consensus size: 21
109 GAAATAAATA
119 GCAAAGCGAACTTGGACTATC
1 GCAAAGCGAACTTGGACTATC
* * *
140 GC-AA-CAAATTTGGAATAAATC
1 GCAAAGCGAACTTGGACT--ATC
* *
161 GCAACGCGAACTTCGACTATC
1 GCAAAGCGAACTTGGACTATC
* * *
182 AC-AA-CGAATTTGGAATAAATC
1 GCAAAGCGAACTTGGACT--ATC
* * *
203 GTAACGCGAACTTCGACTATC
1 GCAAAGCGAACTTGGACTATC
* * **
224 GC-AA-CGAATTTGAAAAATC
1 GCAAAGCGAACTTGGACTATC
* *
243 GCAACGCGAACTTCGACTATC
1 GCAAAGCGAACTTGGACTATC
* **
264 GC-AA-CGAATTTGGAAAATC
1 GCAAAGCGAACTTGGACTATC
* *
283 GCAACGCGAACTTCGACTATC
1 GCAAAGCGAACTTGGACTATC
*
304 GCAACGCGAACTTGGACTA
1 GCAAAGCGAACTTGGACTA
323 CCACAATGCG
Statistics
Matches: 128, Mismatches: 43, Indels: 24
0.66 0.22 0.12
Matches are distributed among these distances:
19 43 0.34
20 7 0.05
21 59 0.46
22 2 0.02
23 17 0.13
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (21 bp):
GCAAAGCGAACTTGGACTATC
Found at i:243 original size:19 final size:18
Alignment explanation
Indices: 221--288 Score: 64
Period size: 19 Copynumber: 3.5 Consensus size: 18
211 AACTTCGACT
221 ATCGCAACGAATTTGAAAA
1 ATCGCAACGAATTTG-AAA
* **
240 ATCGCAACGCGAACTTCGACT
1 ATCGCAA--CGAA-TTTGAAA
261 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTT-GAAA
280 ATCGCAACG
1 ATCGCAACG
289 CGAACTTCGA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
18 2 0.05
19 22 0.56
21 12 0.31
22 3 0.08
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (18 bp):
ATCGCAACGAATTTGAAA
Found at i:253 original size:40 final size:41
Alignment explanation
Indices: 91--309 Score: 334
Period size: 42 Copynumber: 5.3 Consensus size: 41
81 TGCGATTTTG
* * *
91 GACTATCGCAACGAATTTGAAATAAATAGCAAAGCGAACTTG
1 GACTATCGCAACGAATTTG-AATAAATCGCAACGCGAACTTC
*
133 GACTATCGCAACAAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTT-GAATAAATCGCAACGCGAACTTC
* *
175 GACTATCACAACGAATTTGGAATAAATCGTAACGCGAACTTC
1 GACTATCGCAACGAATTT-GAATAAATCGCAACGCGAACTTC
217 GACTATCGCAACGAATTTGAA-AAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGAATAAATCGCAACGCGAACTTC
*
257 GACTATCGCAACGAATTTGGA-AAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGAATAAATCGCAACGCGAACTTC
297 GACTATCGCAACG
1 GACTATCGCAACG
310 CGAACTTGGA
Statistics
Matches: 166, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 70 0.42
41 3 0.02
42 92 0.55
43 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (41 bp):
GACTATCGCAACGAATTTGAATAAATCGCAACGCGAACTTC
Found at i:333 original size:21 final size:21
Alignment explanation
Indices: 284--334 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
274 TGGAAAATCG
* *
284 CAACGCGAACTTCGACTATCG
1 CAACGCGAACTTCGACTACCA
*
305 CAACGCGAACTTGGACTACCA
1 CAACGCGAACTTCGACTACCA
*
326 CAATGCGAA
1 CAACGCGAA
335 TATGTAAATC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.31, G:0.20, T:0.16
Consensus pattern (21 bp):
CAACGCGAACTTCGACTACCA
Found at i:2310 original size:2 final size:2
Alignment explanation
Indices: 2303--2327 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2293 AAATTAAATG
2303 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2328 ATTCAAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12935 original size:56 final size:57
Alignment explanation
Indices: 12837--12967 Score: 147
Period size: 56 Copynumber: 2.3 Consensus size: 57
12827 TAGTGTGGTA
* * * * ** **
12837 AATGCACAGAGGTGCTAGTTTACAGATTGATGTACAGTGGTGCTTAATCGTTTC-TT
1 AATGCACAGAGGTGCCAGTTAAAAGATTGATGCACAAAGGTGCACAATCGTTTCTTT
* * *
12893 AATTCACAGAGGTTCCAGTTAAAAGATTGATGCACAAAGGTGCACAATTGTTTCTTT
1 AATGCACAGAGGTGCCAGTTAAAAGATTGATGCACAAAGGTGCACAATCGTTTCTTT
*
12950 ACTGCACAGAGGTGCCAG
1 AATGCACAGAGGTGCCAG
12968 ATCCTAGATT
Statistics
Matches: 60, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
56 43 0.72
57 17 0.28
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (57 bp):
AATGCACAGAGGTGCCAGTTAAAAGATTGATGCACAAAGGTGCACAATCGTTTCTTT
Found at i:15507 original size:30 final size:30
Alignment explanation
Indices: 15471--15535 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
15461 CGAGAGTTAA
15471 TCCTCCAGCGATGTGCCCTTTTCGGATGAG
1 TCCTCCAGCGATGTGCCCTTTTCGGATGAG
*
15501 TCCTCCAGTGATGTGCCCTTTTCGGATGAG
1 TCCTCCAGCGATGTGCCCTTTTCGGATGAG
15531 TCCTC
1 TCCTC
15536 TAGAGCTGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.12, C:0.31, G:0.25, T:0.32
Consensus pattern (30 bp):
TCCTCCAGCGATGTGCCCTTTTCGGATGAG
Found at i:18326 original size:13 final size:13
Alignment explanation
Indices: 18310--18341 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
18300 TTCTCTCAAA
18310 TCCCAATCTCATC
1 TCCCAATCTCATC
18323 TCCCAATCTCATC
1 TCCCAATCTCATC
18336 TCCCAA
1 TCCCAA
18342 CTTCCAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.25, C:0.47, G:0.00, T:0.28
Consensus pattern (13 bp):
TCCCAATCTCATC
Found at i:20032 original size:26 final size:25
Alignment explanation
Indices: 20003--20052 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
19993 ATTATGGTAT
20003 TACAATTATATTTAGATATACAAATA
1 TACAATTATATTTAGATATA-AAATA
20029 TACAATTATATTTAGATATAAAAT
1 TACAATTATATTTAGATATAAAAT
20053 TTGTAAGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (25 bp):
TACAATTATATTTAGATATAAAATA
Found at i:20120 original size:2 final size:2
Alignment explanation
Indices: 20113--20152 Score: 55
Period size: 2 Copynumber: 20.0 Consensus size: 2
20103 TACATGTTAC
*
20113 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT TT AT AGT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
20153 GTGTTTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 31 0.91
3 2 0.06
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
AT
Found at i:22328 original size:3 final size:3
Alignment explanation
Indices: 22320--22350 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
22310 TTCCTCTTTC
22320 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
22351 TAACTTGATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:22665 original size:3 final size:3
Alignment explanation
Indices: 22657--22682 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
22647 AAAACTAACA
22657 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
22683 CAACTAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:24381 original size:22 final size:22
Alignment explanation
Indices: 24353--24398 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
24343 TCAATACTTC
24353 AAAGTTGAAGGACTAAATTTAT
1 AAAGTTGAAGGACTAAATTTAT
24375 AAAGTTGAAGGACTAAATTTAT
1 AAAGTTGAAGGACTAAATTTAT
24397 AA
1 AA
24399 TTAAACCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.04, G:0.17, T:0.30
Consensus pattern (22 bp):
AAAGTTGAAGGACTAAATTTAT
Found at i:24702 original size:31 final size:30
Alignment explanation
Indices: 24657--24744 Score: 99
Period size: 30 Copynumber: 2.9 Consensus size: 30
24647 TTCTCTTATA
24657 TTTGTTTCTTTGTTTTTGTTGTGATGGGCT
1 TTTGTTTCTTTGTTTTTGTTGTGATGGGCT
* * *
24687 TTTGTTTCCTTTGTTTATGCTGTGA-GGGTT
1 TTTGTTT-CTTTGTTTTTGTTGTGATGGGCT
* *
24717 TTTGTTTTCTTTG-GTTTGTTGTGGTGGG
1 TTTG-TTTCTTTGTTTTTGTTGTGATGGG
24745 TTTCTTCTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
29 7 0.15
30 23 0.48
31 18 0.38
ACGTcount: A:0.03, C:0.07, G:0.30, T:0.60
Consensus pattern (30 bp):
TTTGTTTCTTTGTTTTTGTTGTGATGGGCT
Found at i:24746 original size:30 final size:30
Alignment explanation
Indices: 24657--24764 Score: 96
Period size: 30 Copynumber: 3.6 Consensus size: 30
24647 TTCTCTTATA
* * *
24657 TTTG-TTTCTTTGTTTTTGTTGTGATGGGCT
1 TTTGTTTTCTTTG-GTTTGTTGTGGTGGGTT
* * * *
24687 TTTGTTTCCTTTGTTTATGCTGT-GAGGGTT
1 TTTGTTTTCTTTGGTT-TGTTGTGGTGGGTT
24717 TTTGTTTTCTTTGGTTTGTTGTGGTGGGTT
1 TTTGTTTTCTTTGGTTTGTTGTGGTGGGTT
*
24747 TCTTCTTTT-TTTGGTTTG
1 T-TTGTTTTCTTTGGTTTG
24765 CTTTCATAGG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
29 5 0.08
30 41 0.64
31 18 0.28
ACGTcount: A:0.03, C:0.07, G:0.27, T:0.63
Consensus pattern (30 bp):
TTTGTTTTCTTTGGTTTGTTGTGGTGGGTT
Found at i:25931 original size:31 final size:31
Alignment explanation
Indices: 25864--25942 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
25854 AATTTACAAA
* * * *
25864 ATAACAAATTAGTCACTAATATTATCTATTT
1 ATAACAAAATAGTCACTAACATTACCGATTT
* *
25895 CTAACAAAATAGTCACTAACATTACCGGTTT
1 ATAACAAAATAGTCACTAACATTACCGATTT
*
25926 ATAACAAAATGGTCACT
1 ATAACAAAATAGTCACT
25943 CCATCGTCAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.33
Consensus pattern (31 bp):
ATAACAAAATAGTCACTAACATTACCGATTT
Found at i:28743 original size:20 final size:21
Alignment explanation
Indices: 28708--28783 Score: 59
Period size: 21 Copynumber: 3.6 Consensus size: 21
28698 AATCATTTCT
* * *
28708 AAAAGGATTGACCCCTCT-TC
1 AAAAGGATCGATCCCTCTGAC
*
28728 AAAAGGATCGATCCCT-TGGAG
1 AAAAGGATCGATCCCTCT-GAC
*
28749 AAAAGGATCGATCCCTC-AAC
1 AAAAGGATCGATCCCTCTGAC
28769 AAAAAAGGATCGATC
1 --AAAAGGATCGATC
28784 ACTTCTCTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.02
20 15 0.33
21 16 0.36
22 13 0.29
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (21 bp):
AAAAGGATCGATCCCTCTGAC
Found at i:30431 original size:39 final size:39
Alignment explanation
Indices: 30388--30467 Score: 92
Period size: 40 Copynumber: 2.0 Consensus size: 39
30378 ATATTAAGTA
* *
30388 TTATATACATTTATC-TCTTAT-TGTTTTCTTTTTGTTGAT
1 TTATATACATATATCTTCTT-TCT-TTTTCTATTTGTTGAT
*
30427 TTATATGCATATATCTTTCTTTCTTTTTCTATTTGTTGAT
1 TTATATACATATATC-TTCTTTCTTTTTCTATTTGTTGAT
30467 T
1 T
30468 GTTATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
39 13 0.37
40 17 0.49
41 5 0.14
ACGTcount: A:0.17, C:0.11, G:0.07, T:0.64
Consensus pattern (39 bp):
TTATATACATATATCTTCTTTCTTTTTCTATTTGTTGAT
Found at i:32654 original size:31 final size:31
Alignment explanation
Indices: 32612--32684 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
32602 GTGGATTGAT
* *
32612 CATTTTGTTACAAATTGATAATATTAGTAAC
1 CATTTTATTACAAATAGATAATATTAGTAAC
* *
32643 CATTTTATTACAAATAGATAATATTAGTGAT
1 CATTTTATTACAAATAGATAATATTAGTAAC
*
32674 CAATTTATTAC
1 CATTTTATTAC
32685 TTTTGAAACT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (31 bp):
CATTTTATTACAAATAGATAATATTAGTAAC
Found at i:33603 original size:17 final size:17
Alignment explanation
Indices: 33560--33603 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
33550 CATATTTTTC
*
33560 TCATTTTCTTTTTTTCTT
1 TCATTTTC-TTTATTCTT
33578 TC-TTCTTCTTTATTCTT
1 TCATT-TTCTTTATTCTT
33595 TCATTTTCT
1 TCATTTTCT
33604 CTCTCTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (17 bp):
TCATTTTCTTTATTCTT
Found at i:33928 original size:24 final size:24
Alignment explanation
Indices: 33901--33946 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
33891 TCGGAGCTCC
33901 CAAATTAAATATATCAAAATAATA
1 CAAATTAAATATATCAAAATAATA
* * *
33925 CAAATTGAGTATTTCAAAATAA
1 CAAATTAAATATATCAAAATAA
33947 AGTTAATACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (24 bp):
CAAATTAAATATATCAAAATAATA
Found at i:34729 original size:20 final size:20
Alignment explanation
Indices: 34706--34759 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
34696 TGATCCTTGT
34706 GTATCGATACTCCACCTCGG
1 GTATCGATACTCCACCTCGG
* * *
34726 GTATTGATATTCCACTTCGG
1 GTATCGATACTCCACCTCGG
34746 GTATCGATACTCCA
1 GTATCGATACTCCA
34760 TAGTAAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (20 bp):
GTATCGATACTCCACCTCGG
Found at i:34880 original size:3 final size:3
Alignment explanation
Indices: 34874--34899 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
34864 ATTATTATTA
34874 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
34900 ATTATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:36143 original size:4 final size:4
Alignment explanation
Indices: 36136--36161 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
36126 TTTGTAAATA
36136 ATTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT AT
36162 ATTGCATTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:36277 original size:30 final size:30
Alignment explanation
Indices: 36243--36302 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
36233 ATAGTTTACG
*
36243 AATGTTTTCTAATTATTTATTATACGTTTA
1 AATGTTTTCTAATTATTTATAATACGTTTA
36273 AATGTTTTCTAATTATTTATAATACGTTTA
1 AATGTTTTCTAATTATTTATAATACGTTTA
36303 TATTGTAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.55
Consensus pattern (30 bp):
AATGTTTTCTAATTATTTATAATACGTTTA
Found at i:38672 original size:20 final size:20
Alignment explanation
Indices: 38639--38677 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
38629 CATATTTGCA
*
38639 TTGCATTTAGTCAAGCATTT
1 TTGCATGTAGTCAAGCATTT
* *
38659 TTGCATGTATTCAATCATT
1 TTGCATGTAGTCAAGCATT
38678 AGAATATGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (20 bp):
TTGCATGTAGTCAAGCATTT
Found at i:40906 original size:21 final size:21
Alignment explanation
Indices: 40882--40944 Score: 60
Period size: 23 Copynumber: 3.0 Consensus size: 21
40872 TCGAGAGGTA
*
40882 AAAATGAATAAAAAGAAAAAG
1 AAAAGGAATAAAAAGAAAAAG
40903 AAAAGGAAATGAAAGAA-AAAAAG
1 AAAAGG-AAT-AAA-AAGAAAAAG
40926 -AAAGGAA-AAAATAGAAAAA
1 AAAAGGAATAAAA-AGAAAAA
40945 AATGAATGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
18 1 0.03
19 4 0.11
20 5 0.14
21 7 0.19
22 8 0.22
23 9 0.25
24 2 0.06
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.06
Consensus pattern (21 bp):
AAAAGGAATAAAAAGAAAAAG
Found at i:40941 original size:22 final size:23
Alignment explanation
Indices: 40888--40946 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
40878 GGTAAAAATG
*
40888 AATAAAA-AGAAAAAGAAAAGGA
1 AATAAAAGAAAAAAAGAAAAGGA
*
40910 AATGAAAGAAAAAAAG-AAAGGA
1 AATAAAAGAAAAAAAGAAAAGGA
40932 AA-AAATAGAAAAAAA
1 AATAAA-AGAAAAAAA
40947 TGAATGAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 2 0.06
22 23 0.72
23 7 0.22
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (23 bp):
AATAAAAGAAAAAAAGAAAAGGA
Found at i:46300 original size:15 final size:15
Alignment explanation
Indices: 46281--46336 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
46271 TTCATGGGGT
* *
46281 AAGAAGACAACGTCT
1 AAGAAGAAAACGTCA
46296 AAGAAGAAAACGTCA
1 AAGAAGAAAACGTCA
*
46311 AAGAAGAAAATGTCA
1 AAGAAGAAAACGTCA
46326 AAGAAGGAAAA
1 AAGAA-GAAAA
46337 AGAAAGCATC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
15 32 0.86
16 5 0.14
ACGTcount: A:0.59, C:0.11, G:0.21, T:0.09
Consensus pattern (15 bp):
AAGAAGAAAACGTCA
Found at i:52660 original size:2 final size:2
Alignment explanation
Indices: 52653--52729 Score: 104
Period size: 2 Copynumber: 39.5 Consensus size: 2
52643 TCAATCTACA
* * *
52653 AT AT AT AT AT AT AT AT AT AT A- AT AT AA AT TT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
52694 AT AT A- AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
52730 ATTTATGAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
1 2 0.03
2 64 0.97
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:52892 original size:85 final size:83
Alignment explanation
Indices: 52777--53011 Score: 260
Period size: 85 Copynumber: 2.8 Consensus size: 83
52767 ATCTTTTTTA
* * * *
52777 ATGACGTGTGCTTCAATGACACACAATGTAAGTCATACATGTGTGTCATAAATTTATGACACACA
1 ATGACGGGGGCTTCAATGACA-TCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
*
52842 AATGTATGTCAAGC-AGATTT
65 AATGTATGGC-AGCTA-ATTT
* * *
52862 ATGACGGGGGCTTCAATGACGTGCAATGTAATTCATACATGCGTGTCATAAATTTATGACGCACA
1 ATGACGGGGGCTTCAATGACAT-CAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
* *
52927 AATGTGTGGCATCTTAATTT
65 AATGTATGGCAGC-TAATTT
* * *
52947 ATGACGGGGTCTTCCATGACACTCAATG-AACGTCATTA-ATGCGTGTCATAGATTTATGACACA
1 ATGACGGGGGCTTCAATGACA-TCAATGTAA-GTCA-TACATGCGTGTCATAAATTTATGACACA
53010 CA
63 CA
53012 GTTGCGCATC
Statistics
Matches: 128, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
84 4 0.03
85 120 0.94
86 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (83 bp):
ATGACGGGGGCTTCAATGACATCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACAA
ATGTATGGCAGCTAATTT
Found at i:53025 original size:85 final size:85
Alignment explanation
Indices: 52777--53048 Score: 209
Period size: 85 Copynumber: 3.2 Consensus size: 85
52767 ATCTTTTTTA
* * * *
52777 ATGACGTGTGCTTCAATGACAC-ACAATGTAAGTCATACATGTGTGTCATAAATTTATGACACAC
1 ATGACGGGGGCTTCAATGAC-CTGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACAC
* *
52841 AAATGTATGTCAAGCA----GATTT
65 AAATG--CG-C-AGCATCTTAATTT
* * *
52862 ATGACGGGGGCTTCAATGACGTGCAATGTAATTCATACATGCGTGTCATAAATTTATGACGCACA
1 ATGACGGGGGCTTCAATGACCTGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
* **
52927 AATGTGTGGCATCTTAATTT
66 AATGCGCAGCATCTTAATTT
* * *
52947 ATGACGGGGTCTTCCATGACACT-CAATG-AACGTCATTA-ATGCGTGTCATAGATTTATGACAC
1 ATGACGGGGGCTTCAATGAC-CTGCAATGTAA-GTCA-TACATGCGTGTCATAAATTTATGACAC
** * * *
53009 ACAGTTGCGCATCATCTGAAATTC
63 ACAAATGCGCAGCATCT-TAATTT
* *
53033 ATGTCGGTGGCTTCAA
1 ATGACGGGGGCTTCAA
53049 CGTCAGGCAA
Statistics
Matches: 150, Mismatches: 28, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
81 3 0.02
83 2 0.01
84 2 0.01
85 124 0.83
86 19 0.13
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (85 bp):
ATGACGGGGGCTTCAATGACCTGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
AATGCGCAGCATCTTAATTT
Found at i:59429 original size:38 final size:39
Alignment explanation
Indices: 59372--59463 Score: 150
Period size: 38 Copynumber: 2.4 Consensus size: 39
59362 TCAATTAATT
59372 ACTTCGGTGCATATAGTGGGCACGACCTTATGTGT-AGC
1 ACTTCGGTGCATATAGTGGGCACGACCTTATGTGTAAGC
* *
59410 ACTTTGGTGCATATGGTGGGCACGACCTTATGTGTAAGC
1 ACTTCGGTGCATATAGTGGGCACGACCTTATGTGTAAGC
*
59449 ACTACGGTGCATATA
1 ACTTCGGTGCATATA
59464 TTTGACTCGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 33 0.69
39 15 0.31
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
ACTTCGGTGCATATAGTGGGCACGACCTTATGTGTAAGC
Found at i:61087 original size:19 final size:18
Alignment explanation
Indices: 61065--61104 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
61055 AGATTGTTTC
*
61065 TCTTTAAAAATAAATTTTA
1 TCTTGAAAAA-AAATTTTA
*
61084 TCTTGAAACAAAATTTTA
1 TCTTGAAAAAAAATTTTA
61102 TCT
1 TCT
61105 CACTTGAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.42, C:0.10, G:0.03, T:0.45
Consensus pattern (18 bp):
TCTTGAAAAAAAATTTTA
Found at i:61269 original size:73 final size:72
Alignment explanation
Indices: 61084--61508 Score: 453
Period size: 72 Copynumber: 5.8 Consensus size: 72
61074 ATAAATTTTA
** * *** * *
61084 TCTTGAAACAAAATTTTATCTCACTTGAGATCATTTTTTCTTAAAACAAAATACATCTCACTCGA
1 TCTTGAAACAAAATTTTATCTCACTTGAGAT-ATTTTCCCTTGAAA-ATTTTTCATCTCACTTGA
**
61149 GACAAATTC
64 GACAGTTTC
* * * *
61158 TCTTGAAACATAAATTTCATCTAACTTGAGTTATTTTCCCTTTGAAAATTTTTCGTCTCACTTGA
1 TCTTGAAACA-AAATTTTATCTCACTTGAGATATTTTCCC-TTGAAAATTTTTCATCTCACTTGA
*
61223 GATAGTTTC
64 GACAGTTTC
* * *
61232 TCTTGAAACAAAATTTTATCTCTCTTGAGATATTTTCCCTTGAAAACTTTTCGTCTCACTTGAGA
1 TCTTGAAACAAAATTTTATCTCACTTGAGATATTTTCCCTTGAAAATTTTTCATCTCACTTGAGA
61297 CAGTTTC
66 CAGTTTC
* * * *
61304 TCTTGAAACAAATTTTTCCTCTCACTTGAGATA-TTTCCCTTTGAAAATTTTCCATATCACTTGA
1 TCTTGAAACAAAATTTT-ATCTCACTTGAGATATTTTCCC-TTGAAAATTTTTCATCTCACTTGA
61368 GACAGTTTC
64 GACAGTTTC
* * * * * * *
61377 TCTCGAAACAAATTTTTATCTCCCTTGAGATATTTTTCCTTGAAAACTTTT-ATTATCACTCGAG
1 TCTTGAAACAAAATTTTATCTCACTTGAGATATTTTCCCTTGAAAATTTTTCA-TCTCACTTGAG
61441 ACAGTTTC
65 ACAGTTTC
* * *
61449 TCTTGAAACAAAAATTTCATCTCACTTGAGATA-TTTCCCGTTG-AAATTTTTTATATCACT
1 TCTTGAAAC-AAAATTTTATCTCACTTGAGATATTTTCCC-TTGAAAATTTTTCATCTCACT
61509 CGAAACAAAA
Statistics
Matches: 301, Mismatches: 41, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
71 1 0.00
72 121 0.40
73 112 0.37
74 44 0.15
75 23 0.08
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (72 bp):
TCTTGAAACAAAATTTTATCTCACTTGAGATATTTTCCCTTGAAAATTTTTCATCTCACTTGAGA
CAGTTTC
Found at i:61294 original size:72 final size:73
Alignment explanation
Indices: 61084--61494 Score: 451
Period size: 73 Copynumber: 5.6 Consensus size: 73
61074 ATAAATTTTA
** ** * *
61084 TCTTGAAACAAAATTTTATCTCACTTGAGATCATTTTTTC-TT-AAAACAAAATACATCTCACTC
1 TCTTGAAACAAAATTTTATCTCACTTGAGAT-ATTTTCCCTTTGAAAAC--TTTTCATCTCACTT
**
61147 GAGACAAATTC
63 GAGACAGTTTC
* * * * *
61158 TCTTGAAACATAAATTTCATCTAACTTGAGTTATTTTCCCTTTGAAAATTTTTCGTCTCACTTGA
1 TCTTGAAACA-AAATTTTATCTCACTTGAGATATTTTCCCTTTGAAAACTTTTCATCTCACTTGA
*
61223 GATAGTTTC
65 GACAGTTTC
* *
61232 TCTTGAAACAAAATTTTATCTCTCTTGAGATATTTTCCC-TTGAAAACTTTTCGTCTCACTTGAG
1 TCTTGAAACAAAATTTTATCTCACTTGAGATATTTTCCCTTTGAAAACTTTTCATCTCACTTGAG
61296 ACAGTTTC
66 ACAGTTTC
* * *
61304 TCTTGAAACAAATTTTTCCTCTCACTTGAGATA-TTTCCCTTTGAAAA-TTTTCCATATCACTTG
1 TCTTGAAACAAAATTTT-ATCTCACTTGAGATATTTTCCCTTTGAAAACTTTT-CATCTCACTTG
61367 AGACAGTTTC
64 AGACAGTTTC
* * * * * *
61377 TCTCGAAACAAATTTTTATCTCCCTTGAGATATTTTTCC-TTGAAAACTTTT-ATTATCACTCGA
1 TCTTGAAACAAAATTTTATCTCACTTGAGATATTTTCCCTTTGAAAACTTTTCA-TCTCACTTGA
61440 GACAGTTTC
65 GACAGTTTC
* *
61449 TCTTGAAACAAAAATTTCATCTCACTTGAGATA-TTTCCCGTTGAAA
1 TCTTGAAAC-AAAATTTTATCTCACTTGAGATATTTTCCCTTTGAAA
61495 TTTTTTATAT
Statistics
Matches: 291, Mismatches: 35, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
71 1 0.00
72 108 0.37
73 115 0.40
74 43 0.15
75 20 0.07
76 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (73 bp):
TCTTGAAACAAAATTTTATCTCACTTGAGATATTTTCCCTTTGAAAACTTTTCATCTCACTTGAG
ACAGTTTC
Found at i:61375 original size:145 final size:144
Alignment explanation
Indices: 61084--61508 Score: 541
Period size: 145 Copynumber: 2.9 Consensus size: 144
61074 ATAAATTTTA
* ** *
61084 TCTTGAAACAAAATTTTATCTCACTTGAGATCATTTTTTCTT-AAAACAAAATACATCTCACTCG
1 TCTTGAAACAAAATTTTATCTCACTTGAGAT-ATTTTTCCTTGAAAAC--TTTTCATCTCACTCG
** * * *
61148 AGACAAATTCTCTTGAAACATAAATTTCATCTAACTTGAGTTATTTTCCCTTTGAAAATTTTTCG
63 AGACAGTTTCTCTTGAAACA-AAATTTCATCTCACTTGAGATA-TTTCCCTTTGAAAATTTTTCA
* *
61213 TCTCACTTGAGATAGTTTC
126 TATCACTTGAGACAGTTTC
* * * *
61232 TCTTGAAACAAAATTTTATCTCTCTTGAGATATTTTCCCTTGAAAACTTTTCGTCTCACTTGAGA
1 TCTTGAAACAAAATTTTATCTCACTTGAGATATTTTTCCTTGAAAACTTTTCATCTCACTCGAGA
* * *
61297 CAGTTTCTCTTGAAACAAATTTTTCCTCTCACTTGAGATATTTCCCTTTGAAAATTTTCCATATC
66 CAGTTTCTCTTGAAACAAA-ATTTCATCTCACTTGAGATATTTCCCTTTGAAAATTTTTCATATC
61362 ACTTGAGACAGTTTC
130 ACTTGAGACAGTTTC
* * * *
61377 TCTCGAAACAAATTTTTATCTCCCTTGAGATATTTTTCCTTGAAAACTTTT-ATTATCACTCGAG
1 TCTTGAAACAAAATTTTATCTCACTTGAGATATTTTTCCTTGAAAACTTTTCA-TCTCACTCGAG
* *
61441 ACAGTTTCTCTTGAAACAAAAATTTCATCTCACTTGAGATATTTCCCGTTG-AAATTTTTTATAT
65 ACAGTTTCTCTTGAAAC-AAAATTTCATCTCACTTGAGATATTTCCCTTTGAAAATTTTTCATAT
61505 CACT
129 CACT
61509 CGAAACAAAA
Statistics
Matches: 243, Mismatches: 30, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
144 15 0.06
145 138 0.57
146 47 0.19
147 8 0.03
148 35 0.14
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (144 bp):
TCTTGAAACAAAATTTTATCTCACTTGAGATATTTTTCCTTGAAAACTTTTCATCTCACTCGAGA
CAGTTTCTCTTGAAACAAAATTTCATCTCACTTGAGATATTTCCCTTTGAAAATTTTTCATATCA
CTTGAGACAGTTTC
Found at i:61900 original size:36 final size:36
Alignment explanation
Indices: 61830--61906 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
61820 AACTCAAACT
*
61830 TTGAGATTGTTTTCTTAAAATAAAATTTCATCTCAC
1 TTGAGATTGTTTTCTTAAAACAAAATTTCATCTCAC
* *
61866 TTGAGATTGTTGTTTTTAAAACAAAATTT-GTCTCAC
1 TTGAGATTGTT-TTCTTAAAACAAAATTTCATCTCAC
61902 TTGAG
1 TTGAG
61907 TCAGTTTCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 22 0.59
37 15 0.41
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (36 bp):
TTGAGATTGTTTTCTTAAAACAAAATTTCATCTCAC
Found at i:61969 original size:101 final size:101
Alignment explanation
Indices: 61664--61971 Score: 345
Period size: 101 Copynumber: 3.1 Consensus size: 101
61654 TTTTATCTCT
* * * * *
61664 CTTGAGATTATT-TTTTTAAAACAAATTTCGTCTCGCTTTAGAAAGTTTCTCACGAAACTCAAAC
1 CTTGAGATTGTTGTTTTTAAAACAAATTTCGTCTCGCTTGAGACAGTTTCTTATGAAACTCAAAC
* * *
61728 TTTGAGATTATTTTTCTTAAAAAAAAATTCATATCA
66 TTTGAGAATAGTTTTCTTAAAAAAAATTTCATATCA
* *** * * *
61764 CTTAAGATTGTTGGCCTTAAAACAAATTTCTTCTCGTTTGAGACAATTTCTCT-TGAAACTCAAA
1 CTTGAGATTGTTGTTTTTAAAACAAATTTCGTCTCGCTTGAGACAGTTTCT-TATGAAACTCAAA
* *
61828 CTTTGAG-ATTGTTTTCTTAAAATAAAATTTCATCTCA
65 CTTTGAGAATAGTTTTCTTAAAA-AAAATTTCATATCA
* * *
61865 CTTGAGATTGTTGTTTTTAAAACAAAATTT-GTCTCACTTGAGTCAGTTTCTTATGAAATTCAAA
1 CTTGAGATTGTTGTTTTTAAAAC-AAATTTCGTCTCGCTTGAGACAGTTTCTTATGAAACTCAAA
* * * *
61929 CTTTGAGAATGGTTTTCTTAAAACAAATTTCTTGTCA
65 CTTTGAGAATAGTTTTCTTAAAAAAAATTTCATATCA
61966 CTTGAG
1 CTTGAG
61972 GTTATTTCTT
Statistics
Matches: 171, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
100 23 0.13
101 128 0.75
102 20 0.12
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (101 bp):
CTTGAGATTGTTGTTTTTAAAACAAATTTCGTCTCGCTTGAGACAGTTTCTTATGAAACTCAAAC
TTTGAGAATAGTTTTCTTAAAAAAAATTTCATATCA
Found at i:61970 original size:65 final size:63
Alignment explanation
Indices: 61881--62036 Score: 163
Period size: 65 Copynumber: 2.4 Consensus size: 63
61871 ATTGTTGTTT
* *
61881 TTAAAACAAAATTTGTCTCACTTGAGTCAGTTTCTTATGAAA-TTCAAACTTTGAGAA-TGGTTT
1 TTAAAAC-AAATTTTTCTCACTTGAGTCA-TTTCTTATGAAACTT-AAACCTTGA-AATTGGTTT
61944 TC
62 TC
* * * **
61946 TTAAAACAAATTTCTTGTCACTTGAGGTTATTTCTTTTGAAACTTAAACCTTGAAATTTTTTTTC
1 TTAAAACAAATTT-TTCTCACTTGA-GTCATTTCTTATGAAACTTAAACCTTGAAATTGGTTTTC
*
62011 ATAAAACAAATTTTGTCTCACTTGAG
1 TTAAAACAAATTTT-TCTCACTTGAG
62037 ATAATCTTTC
Statistics
Matches: 77, Mismatches: 9, Indels: 11
0.79 0.09 0.11
Matches are distributed among these distances:
64 10 0.13
65 62 0.81
66 5 0.06
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (63 bp):
TTAAAACAAATTTTTCTCACTTGAGTCATTTCTTATGAAACTTAAACCTTGAAATTGGTTTTC
Found at i:62139 original size:27 final size:28
Alignment explanation
Indices: 62087--62140 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
62077 TCAAAACAAA
* *
62087 TTTCCATCTCCCTTGAGATAAACATCAT
1 TTTCAATCTCACTTGAGATAAACATCAT
*
62115 TTTCAATCTCACTTGAGA-AATCATCA
1 TTTCAATCTCACTTGAGATAAACATCA
62141 AGATGGAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.35
Consensus pattern (28 bp):
TTTCAATCTCACTTGAGATAAACATCAT
Found at i:62608 original size:43 final size:43
Alignment explanation
Indices: 62555--62783 Score: 302
Period size: 43 Copynumber: 5.3 Consensus size: 43
62545 CGAGATATTA
* *
62555 GGGTACATTATCAACAGAAATATACTATAGTTGAAATGCATAT
1 GGGTGCATTATCAACAAAAATATACTATAGTTGAAATGCATAT
* *
62598 GGGTGCATTATCAACAAAAGTATGA-TATAGTTGAAATGTATAT
1 GGGTGCATTATCAACAAAAATAT-ACTATAGTTGAAATGCATAT
* *
62641 GGGTACATTATCAACAGAAAAATATATTATAGTTGAAATGCATAT
1 GGGTGCATTATCAAC--AAAAATATACTATAGTTGAAATGCATAT
* *
62686 GGGTGCATTATCAACAAAAATATACTATAGCTGAAATGTATA-
1 GGGTGCATTATCAACAAAAATATACTATAGTTGAAATGCATAT
*
62728 GGGTGCATTATCAACATAAAATATGCTATAGTTGAAAGTGCATAAT
1 GGGTGCATTATCAACA-AAAATATACTATAGTTGAAA-TGCAT-AT
62774 -GGTGCATTAT
1 GGGTGCATTAT
62784 AAATATGAAT
Statistics
Matches: 164, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
42 16 0.10
43 93 0.57
44 6 0.04
45 49 0.30
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (43 bp):
GGGTGCATTATCAACAAAAATATACTATAGTTGAAATGCATAT
Found at i:62702 original size:88 final size:86
Alignment explanation
Indices: 62553--62783 Score: 342
Period size: 88 Copynumber: 2.7 Consensus size: 86
62543 CTCGAGATAT
62553 TAGGGTACATTATCAACAG-AAATATACTATAGTTGAAATGCATATGGGTGCATTATCAACAAAA
1 TAGGGTACATTATCAACAGAAAATATACTATAGTTGAAATGCATATGGGTGCATTATCAACAAAA
* *
62617 GTATGA-TATAGTTGAAATGTA
66 ATAT-ACTATAGCTGAAATGTA
*
62638 TATGGGTACATTATCAACAGAAAAATATATTATAGTTGAAATGCATATGGGTGCATTATCAACAA
1 TA-GGGTACATTATCAACAG-AAAATATACTATAGTTGAAATGCATATGGGTGCATTATCAACAA
62703 AAATATACTATAGCTGAAATGTA
64 AAATATACTATAGCTGAAATGTA
* * *
62726 TAGGGTGCATTATCAACATAAAATATGCTATAGTTGAAAGTGCATAAT-GGTGCATTAT
1 TAGGGTACATTATCAACAGAAAATATACTATAGTTGAAA-TGCAT-ATGGGTGCATTAT
62784 AAATATGAAT
Statistics
Matches: 133, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
85 2 0.02
86 35 0.26
87 31 0.23
88 65 0.49
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (86 bp):
TAGGGTACATTATCAACAGAAAATATACTATAGTTGAAATGCATATGGGTGCATTATCAACAAAA
ATATACTATAGCTGAAATGTA
Done.