Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003446.1 Hibiscus syriacus cultivar Beakdansim tig00007271_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98604

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--52
21
2.1
21
91
8
70
21
4
26
47
1.70
496--529
16
2.1
17
88
5
52
47
0
5
47
1.26
1816--1879
32
2.0
32
87
0
92
28
15
17
39
1.90
2819--2862
22
2.0
22
90
0
70
29
27
9
34
1.87
2771--3088
81
3.9
80
90
2
474
28
22
12
36
1.91
4631--4708
37
2.1
36
81
6
86
48
2
1
47
1.23
6398--6441
22
1.9
24
82
17
58
63
0
27
9
1.24
6880--6911
15
2.1
15
94
0
55
34
18
6
40
1.76
22586--22643
22
2.6
22
86
5
73
12
10
17
60
1.58
22605--22652
22
2.2
22
85
7
62
16
10
14
58
1.63
24885--24926
12
3.4
12
81
15
50
28
0
2
69
1.01
30358--30420
32
2.0
32
83
0
81
30
6
19
44
1.75
30624--30812
94
2.0
94
100
0
378
34
19
17
28
1.95
37718--37751
18
1.9
18
88
5
52
17
26
26
29
1.98
39749--39810
3
21.3
3
84
12
85
30
0
0
69
0.89
39870--39945
33
2.3
33
86
4
100
36
14
14
34
1.87
40417--40451
11
3.3
11
96
4
63
28
0
0
71
0.86
40722--41106
30
13.0
28
75
15
135
53
2
7
37
1.41
40843--41105
30
8.8
30
81
7
187
52
1
9
37
1.41
40839--41103
91
3.0
91
81
5
265
52
1
9
36
1.41
42049--42126
3
26.0
3
81
5
95
38
1
0
60
1.05
43455--43530
29
2.7
27
73
13
64
27
1
3
67
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54802--54888
17
5.5
16
79
16
101
81
0
18
0
0.69
54795--54897
31
3.2
31
87
10
145
81
0
17
0
0.74
54814--54899
13
6.8
12
76
19
68
82
0
17
0
0.67
56390--57170
113
7.0
113
91
2
1159
37
15
17
29
1.91
57091--57377
118
2.4
121
86
6
390
42
15
18
24
1.88
57526--57587
3
20.0
3
86
3
79
38
1
0
59
1.07
58865--58940
29
2.7
27
73
13
64
27
1
3
67
1.17
59003--59242
121
2.0
119
82
3
304
38
6
8
46
1.59
59109--59150
20
2.2
19
86
4
57
33
0
2
64
1.07
64955--65026
3
24.3
3
83
8
94
62
0
4
33
1.14
65199--65400
36
5.6
36
88
1
253
26
22
14
36
1.93
74390--74457
3
22.3
3
85
8
93
64
0
2
32
1.08
74395--74459
33
2.0
33
90
6
105
63
0
3
33
1.10
75067--75109
21
2.0
21
100
0
86
32
13
13
39
1.85
75215--75305
20
4.9
20
68
20
72
34
5
15
45
1.69
75214--75361
53
2.8
52
95
3
271
33
5
13
47
1.65
75320--75359
20
2.0
20
95
0
71
37
5
12
45
1.64
79926--80016
20
4.9
20
68
20
72
34
5
15
45
1.69
79925--80072
53
2.8
52
95
3
271
33
5
13
47
1.65
80031--80070
20
2.0
20
95
0
71
37
5
12
45
1.64
80502--80549
24
2.0
25
83
4
62
62
12
2
22
1.40
93323--93471
74
2.0
74
100
0
298
38
13
8
39
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95868--95917
24
2.1
24
85
3
66
68
4
4
24
1.24

Tables:   1

The End!