Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003450.1 Hibiscus syriacus cultivar Beakdansim tig00007287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40468

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3569--3608
20
1.9
22
90
10
66
37
37
10
15
1.80
6424--6479
17
3.1
17
79
18
67
32
10
8
48
1.69
6440--6480
21
2.0
21
95
0
73
31
9
7
51
1.62
6869--6909
21
2.0
21
95
0
73
31
24
26
17
1.97
7497--7666
45
3.8
45
88
0
252
31
25
10
33
1.89
8080--8135
21
2.7
20
80
2
58
28
28
14
28
1.95
10204--10284
28
2.9
28
88
0
126
17
16
25
40
1.89
10506--10535
15
2.0
15
93
0
51
50
0
26
23
1.50
14654--14734
28
2.9
28
90
0
126
16
19
27
37
1.93
15242--15280
14
2.6
15
92
8
62
56
7
0
35
1.28
15242--15278
16
2.3
16
100
0
74
56
5
0
37
1.22
16917--16963
24
2.0
24
87
8
69
70
2
2
25
1.10
16975--17005
2
15.5
2
100
0
62
48
0
0
51
1.00
16927--16980
23
2.2
26
77
12
60
64
0
1
33
1.04
17591--17635
24
2.0
24
91
8
76
31
2
4
62
1.27
24594--24618
12
2.1
12
100
0
50
60
0
0
40
0.97
26106--26141
6
5.8
6
87
6
54
80
2
0
16
0.83
26085--26141
25
2.2
27
87
9
84
77
3
1
17
1.00
27062--27114
27
2.0
27
85
7
72
58
0
1
39
1.09
27028--27105
35
2.2
36
78
15
83
58
0
3
37
1.16
27386--27512
66
1.9
65
81
10
152
44
6
11
37
1.66
28858--29418
114
5.0
114
89
4
827
28
19
14
36
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30911--30945
15
2.3
15
90
5
52
14
14
0
71
1.15
30909--30946
16
2.4
17
82
13
53
15
13
0
71
1.16
30933--30966
12
2.8
12
86
4
50
8
14
0
76
1.01
30923--30966
13
3.3
13
84
12
54
11
15
0
72
1.11

Tables:   1

The End!