genome.fa.s3452.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003452.1 Hibiscus syriacus cultivar Beakdansim tig00007299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178458

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4207--4362	31	5.0	31	92	4	253	19	19	23	37	1.94
8569--8623	18	3.1	18	82	17	71	72	0	18	9	1.10
8611--8648	12	3.0	13	78	21	53	78	0	15	5	0.91
8633--8678	19	2.5	19	82	3	58	67	0	26	6	1.15
8557--8698	61	2.3	60	81	11	146	71	0	21	7	1.11
8575--8649	8	8.8	8	74	18	62	74	0	17	8	1.04
10037--10143	24	4.5	24	75	0	106	47	16	14	20	1.82
10037--10145	48	2.3	48	78	0	128	47	16	15	20	1.82
12604--12642	7	5.4	7	93	6	69	25	28	33	12	1.93
12604--12658	15	3.9	15	90	6	80	21	27	36	14	1.93
12634--12708	30	2.5	30	91	6	116	16	20	48	16	1.82
12619--12693	13	5.3	13	75	20	62	18	21	44	16	1.87
12640--12715	18	4.6	18	72	24	85	13	19	50	17	1.78
14225--14749	55	9.7	54	83	7	529	29	16	23	31	1.96
26950--27079	43	3.0	43	86	4	145	28	16	26	29	1.97
31532--31578	2	23.5	2	100	0	94	48	0	0	51	1.00
31833--32138	49	6.2	49	77	9	266	28	14	28	28	1.95
31829--32138	98	3.2	99	82	4	337	28	15	28	28	1.96
31829--32100	147	1.9	147	82	3	350	28	14	28	29	1.95
31829--32136	147	2.1	147	80	6	338	28	15	27	28	1.96
32805--32864	29	2.1	29	100	0	120	28	10	25	36	1.88
33462--33513	27	2.0	27	96	3	97	34	9	23	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47207--47255	24	2.0	24	100	0	98	30	28	16	24	1.96
48554--48652	21	4.8	20	71	6	63	38	22	19	20	1.94
48619--48928	20	15.5	20	87	1	334	37	24	18	20	1.94
49611--49657	24	2.0	24	87	8	69	25	14	21	38	1.92
52122--52335	19	12.4	19	76	19	229	46	18	21	13	1.83
52122--52316	33	5.8	32	77	16	191	46	18	21	13	1.83
52153--52357	52	4.0	52	99	0	403	45	17	22	13	1.84
52205--52357	33	4.5	33	74	16	159	45	17	22	13	1.84
52382--52479	19	5.4	19	84	13	143	14	22	17	45	1.84
52364--52479	53	2.2	53	96	1	216	13	23	18	44	1.85
52579--52614	13	2.6	14	86	4	56	47	22	0	30	1.52
52679--52714	12	3.0	12	83	0	54	63	16	0	19	1.30
53725--54088	181	2.0	182	97	2	696	19	19	35	24	1.95
54445--54578	19	7.6	19	75	18	119	45	23	18	11	1.83
54482--54573	33	2.8	33	91	1	150	46	21	19	11	1.82
54574--54702	19	7.3	19	73	17	116	9	16	27	46	1.77
54574--54665	33	2.8	33	91	3	141	8	17	27	46	1.77
54830--54951	60	2.0	61	96	3	230	50	17	9	22	1.73
56681--56737	14	3.7	14	75	20	60	43	22	24	8	1.81
56673--56753	33	2.5	33	97	2	155	46	19	23	9	1.80
56695--56758	18	3.7	19	72	21	68	43	21	23	10	1.84
56765--56819	14	3.2	18	78	17	64	9	23	20	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56778--56868	19	4.7	20	77	12	93	12	25	18	43	1.84
56942--57011	33	2.2	33	89	2	106	47	18	22	11	1.81
57191--57245	22	2.5	22	81	0	74	20	16	40	23	1.91
57390--57544	20	7.7	20	82	4	204	21	19	25	33	1.97
57392--57562	60	2.8	60	82	1	227	19	18	26	35	1.95
57389--57581	20	9.7	19	80	3	102	19	19	25	35	1.95
59484--59528	21	2.1	21	84	8	56	37	15	2	44	1.59
65654--65752	10	10.3	9	69	12	63	16	24	27	32	1.96
65693--65750	19	3.0	19	85	7	73	18	24	27	29	1.98
65653--65724	29	2.4	31	79	9	87	16	23	26	33	1.96
65747--65775	14	2.1	14	100	0	58	20	51	20	6	1.70
71714--71746	15	2.1	16	88	5	50	30	0	3	66	1.06
73241--73326	35	2.5	35	86	0	109	40	19	1	38	1.60
73295--73337	21	2.0	21	100	0	86	46	13	0	39	1.44
73460--73491	15	2.0	17	88	11	50	28	3	6	62	1.34
73957--74204	130	1.9	130	89	0	388	37	12	13	36	1.83
76351--76387	18	2.0	19	89	5	58	29	2	27	40	1.70
84375--84417	21	2.0	21	81	0	50	27	27	25	18	1.98
84445--84482	20	1.9	20	88	0	58	26	34	28	10	1.90
85569--85668	30	3.3	30	88	1	128	24	19	24	33	1.97
88998--89040	21	2.0	21	81	0	50	27	27	25	18	1.98
89068--89105	20	1.9	20	88	0	58	23	34	31	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90225--90327	30	3.4	30	97	0	188	24	20	24	31	1.98
94351--94639	143	2.0	143	99	0	569	32	21	16	29	1.95
95881--95908	8	3.5	8	100	0	56	10	0	0	89	0.49
100545--100581	17	2.1	18	90	5	58	43	2	0	54	1.14
100551--100589	17	2.3	17	86	8	53	51	2	0	46	1.14
100687--100727	2	20.5	2	100	0	82	48	0	0	51	1.00
106819--106909	3	30.3	3	90	4	94	56	0	0	43	0.99
107055--107326	124	2.3	119	85	6	343	24	19	16	40	1.91
107273--107364	36	2.6	36	94	0	157	18	20	10	50	1.77
107308--107364	17	3.2	17	68	18	53	19	21	8	50	1.74
107308--107739	113	3.9	111	83	5	507	29	17	13	39	1.88
108472--108785	115	2.7	115	94	0	565	30	21	15	32	1.94
110053--110124	1	72.0	1	80	0	81	0	9	0	90	0.46
110055--110122	7	9.9	7	95	4	113	0	10	0	89	0.48
121338--121381	23	1.9	23	85	0	61	50	0	2	47	1.13
123027--123080	3	18.0	3	92	7	92	64	0	0	35	0.94
124243--124616	187	2.0	182	84	5	475	38	17	10	32	1.85
130653--130734	3	26.7	3	82	4	101	40	0	0	59	0.97
136117--136148	15	2.1	15	94	0	55	25	18	9	46	1.79
143977--144372	83	4.7	83	90	7	645	27	13	21	37	1.92
144235--144618	205	1.9	203	87	7	560	31	14	20	33	1.92
145330--145836	110	4.7	112	87	8	683	38	15	18	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146170--146248	3	25.7	3	87	5	113	37	0	0	62	0.96
148334--148363	2	15.5	2	93	6	53	50	0	0	50	1.00
148328--148425	33	2.9	33	76	18	94	51	0	0	48	1.00
150691--150747	2	29.5	2	78	7	64	49	0	0	50	1.00
150919--150950	11	2.9	11	95	0	55	15	53	28	3	1.57
151211--151252	19	2.2	19	86	0	57	38	14	19	28	1.90
151530--151595	2	33.0	2	93	0	114	48	0	3	48	1.17
155159--155219	24	2.6	23	75	14	61	31	3	16	49	1.62
155162--155223	25	2.6	23	73	12	54	30	3	16	50	1.61
156561--156599	20	1.9	21	89	5	62	30	15	17	35	1.91
159318--159348	4	7.8	4	100	0	62	77	0	0	22	0.77
160871--160973	30	3.4	30	89	2	136	31	27	21	20	1.98
160874--160998	30	4.1	30	86	4	119	32	27	21	19	1.97
160946--161023	31	2.5	31	85	4	95	34	23	20	21	1.97
162094--162138	21	2.1	21	87	0	63	15	24	28	31	1.96
163531--163573	11	3.9	11	96	0	77	44	9	9	37	1.69
167500--167543	17	2.6	17	77	0	52	59	0	0	40	0.98
168458--168591	24	5.9	24	72	13	104	37	0	5	56	1.27
168457--168617	24	7.2	22	70	17	75	37	0	6	55	1.31
172397--172516	63	2.0	60	85	6	161	22	18	9	50	1.75

Tables:   1

The End!