genome.fa.s3453.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003453.1 Hibiscus syriacus cultivar Beakdansim tig00007300_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95717

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881--909	14	2.0	15	93	6	51	0	34	31	34	1.58
3103--3237	42	3.2	43	80	3	130	18	23	20	37	1.94
3111--3240	43	3.0	43	82	3	138	18	23	20	36	1.94
5157--5216	29	2.0	31	90	6	97	41	16	6	35	1.75
6431--6464	2	18.0	2	88	11	54	47	0	0	52	1.00
8523--8572	22	2.3	22	96	0	91	14	8	26	52	1.68
8553--8583	16	1.9	16	93	0	53	16	6	22	54	1.64
10814--10889	30	2.5	30	78	6	82	76	5	1	17	1.04
10845--10923	29	2.7	29	82	5	79	75	6	5	12	1.15
10974--11034	5	12.0	5	81	16	72	78	1	1	18	0.91
21776--21827	27	1.9	27	88	0	77	44	3	1	50	1.31
22414--22459	2	23.0	2	100	0	92	50	0	0	50	1.00
29576--29680	37	2.8	37	91	0	165	32	10	16	40	1.82
30818--31331	110	4.7	110	89	0	776	26	16	22	35	1.95
32986--33048	13	4.4	13	80	18	54	0	14	4	80	0.86
32975--33045	31	2.3	31	88	7	101	0	14	5	80	0.89
32993--33060	33	2.1	33	83	5	84	1	16	2	79	0.93
32975--33054	14	5.4	14	81	12	90	0	13	5	81	0.85
32975--33060	30	2.9	29	80	13	95	1	13	4	80	0.93
32975--33054	31	2.7	29	79	7	90	0	13	5	81	0.85
33018--33060	9	5.2	8	81	13	52	2	13	0	83	0.74
36080--36129	26	1.9	26	88	8	75	72	2	8	18	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36076--36136	26	2.3	27	78	15	74	70	1	11	16	1.24
36151--36242	21	4.4	21	68	18	66	72	0	4	22	1.02
36166--36285	50	2.4	50	78	12	131	72	0	3	24	1.00
36164--36243	9	8.9	9	77	15	51	75	0	2	22	0.93
36376--36442	24	2.8	22	76	14	62	65	2	7	23	1.32
36374--36442	26	2.8	23	80	10	75	65	2	7	24	1.32
36350--36385	2	18.0	2	100	0	72	50	0	0	50	1.00
36390--36456	23	3.2	21	76	16	59	67	4	7	20	1.34
36950--37057	37	2.9	37	92	0	180	32	11	15	40	1.83
36946--37088	74	1.9	73	81	5	171	31	13	13	41	1.84
41998--42039	21	2.0	21	90	9	68	23	11	26	38	1.90
42982--43073	23	4.0	23	84	0	121	31	23	27	17	1.97
45660--45691	16	2.0	16	100	0	64	25	0	6	68	1.12
46302--46348	24	2.0	24	91	4	78	23	6	14	55	1.63
59027--59051	7	3.6	7	100	0	50	28	0	44	28	1.55
63448--63610	65	2.5	65	86	1	229	29	14	24	31	1.94
63451--63651	65	3.1	65	82	11	202	27	14	24	32	1.95
72774--72824	20	2.4	20	78	21	59	39	17	15	27	1.90
77910--77960	20	2.6	19	75	6	57	31	23	11	33	1.91
81654--81684	16	1.9	16	93	0	53	41	3	22	32	1.70
81844--81902	19	3.1	19	80	9	66	47	3	15	33	1.62
81954--81992	13	2.9	13	88	3	51	58	0	20	20	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81951--81993	7	6.4	7	84	10	54	58	0	18	23	1.40
84081--84163	23	3.7	22	78	10	89	30	27	15	26	1.96
84694--84744	19	2.7	20	84	9	70	21	29	13	35	1.92
86963--86992	3	10.0	3	100	0	60	66	0	0	33	0.92
87169--87205	3	12.3	3	100	0	74	67	0	0	32	0.91
87451--87501	27	2.0	25	88	11	77	39	5	3	50	1.45
91349--91404	2	28.0	2	100	0	112	50	0	0	50	1.00
93032--93075	20	2.2	20	95	0	79	18	38	25	18	1.92
94372--94407	18	2.0	18	88	0	54	52	0	16	30	1.44

Tables:   1

The End!