genome.fa.s3455.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003455.1 Hibiscus syriacus cultivar Beakdansim tig00007304_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89129

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6629--6752	64	1.9	64	85	3	169	29	16	22	31	1.96
7500--7545	20	2.3	20	80	0	56	34	15	6	43	1.72
8017--8170	77	2.0	77	92	0	254	35	8	21	34	1.84
15373--15409	19	1.9	19	89	10	58	10	35	0	54	1.36
25915--25952	19	2.0	19	85	10	51	23	0	15	60	1.35
42772--42821	12	4.2	12	80	7	57	48	0	0	52	1.00
42780--42829	25	2.0	24	88	3	73	46	0	0	54	1.00
42789--42931	42	3.5	40	71	15	105	46	2	1	48	1.25
42780--42874	25	3.8	25	74	15	72	47	3	1	48	1.24
42981--43035	23	2.4	21	77	16	56	52	3	0	43	1.18
42997--43043	21	2.1	23	84	7	62	48	0	0	51	1.00
43017--43100	29	2.9	29	72	17	75	46	1	4	47	1.31
43147--43201	23	2.5	21	80	11	65	45	0	1	52	1.11
43701--43744	3	15.3	3	86	9	65	36	0	0	63	0.95
43703--43744	17	2.5	17	92	0	66	35	0	0	64	0.94
43701--43744	11	3.8	12	82	11	65	36	0	0	63	0.95
43702--43743	14	3.0	14	89	0	66	33	0	0	66	0.92
45094--45131	19	2.1	19	85	5	51	31	5	2	60	1.33
47985--48067	42	2.0	42	90	0	130	50	10	18	20	1.76
48263--48596	165	2.0	165	98	0	650	39	14	18	27	1.89
51177--51292	7	15.9	7	79	13	83	76	0	22	0	0.84
51167--51291	14	8.9	14	76	18	102	76	0	22	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51164--51291	59	2.2	59	83	9	163	76	0	22	0	0.83
51169--51293	45	3.0	42	80	13	141	76	0	22	0	0.83
51166--51292	60	2.1	59	83	9	159	77	0	22	0	0.82
52501--52683	51	3.6	51	88	2	269	36	19	22	21	1.95
54270--54803	177	3.0	177	93	0	908	30	17	21	29	1.96
54821--55113	124	2.4	124	91	0	462	36	16	20	26	1.94
55056--55190	39	3.5	38	89	3	189	44	11	20	23	1.84
55088--55150	20	3.2	20	65	13	58	44	11	22	22	1.84
54932--55313	201	1.9	200	84	3	516	39	14	20	25	1.91
55127--55697	123	4.6	123	87	0	739	40	13	19	26	1.89
54821--55437	325	1.9	325	83	5	791	38	14	20	26	1.91
55818--55869	3	18.0	3	84	7	72	34	1	0	63	1.06
55819--55869	17	3.0	17	91	5	77	35	1	0	62	1.06
55818--55870	20	2.7	20	87	0	79	35	1	0	62	1.06
57182--57231	19	2.5	21	80	6	59	32	4	2	62	1.25
58444--58524	3	26.7	3	76	16	78	35	1	0	62	1.03
59894--59943	12	4.3	12	78	16	52	30	4	2	64	1.23
60738--60793	26	2.1	27	90	3	87	25	0	5	69	1.09
63096--63135	7	5.9	7	86	13	57	15	17	12	55	1.70
70147--70298	54	2.8	54	86	0	187	38	13	20	26	1.90
71418--71526	45	2.4	45	82	3	128	26	24	17	31	1.97
71360--71957	121	4.9	121	88	1	865	27	21	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71539--71637	45	2.2	45	79	0	108	29	22	17	31	1.96
72073--72115	5	8.8	5	85	14	63	39	0	0	60	0.97
72073--72115	19	2.2	20	95	4	79	39	0	0	60	0.97
73359--73431	28	2.5	29	80	13	87	35	5	2	56	1.37
73481--73535	21	2.7	19	79	17	65	30	3	1	63	1.22
81925--81964	17	2.4	17	86	0	53	15	27	27	30	1.96
84494--84555	12	5.2	12	75	7	54	11	8	19	61	1.54
84490--84557	24	2.9	23	77	4	73	13	8	17	60	1.58

Tables:   1

The End!