genome.fa.s3456.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003456.1 Hibiscus syriacus cultivar Beakdansim tig00007305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88254

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4775--4838	21	3.1	21	75	4	76	17	17	26	39	1.91
10398--10452	23	2.4	23	90	0	83	27	10	14	47	1.78
10408--10459	23	2.3	23	82	0	68	32	15	13	38	1.86
10983--11028	18	2.6	16	81	18	56	60	0	4	34	1.16
12182--12366	22	8.6	22	81	8	229	42	1	8	48	1.41
12179--12365	65	2.9	64	85	7	256	42	1	8	47	1.41
12389--12448	31	1.9	31	93	0	102	45	8	5	41	1.56
12457--12495	17	2.2	18	81	9	53	35	5	5	53	1.45
15137--15284	59	2.5	59	84	4	183	31	18	4	45	1.69
22143--22276	60	2.2	60	81	0	160	42	7	16	33	1.76
22906--22948	2	21.5	2	100	0	86	48	0	0	51	1.00
24469--24523	29	1.9	28	88	3	83	38	5	10	45	1.63
27618--27650	2	16.5	2	100	0	66	51	0	0	48	1.00
27788--27870	42	2.0	41	85	2	112	42	6	10	40	1.64
33537--33616	40	2.0	40	100	0	160	25	27	10	37	1.88
38876--38958	42	2.0	42	92	0	139	50	9	4	34	1.56
39854--39900	18	2.7	18	83	3	60	38	8	25	27	1.85
40434--40500	27	2.4	28	92	2	118	43	31	8	16	1.79
40248--40812	252	2.2	244	83	10	692	40	18	11	29	1.85
45185--45241	29	1.9	30	92	3	98	61	3	1	33	1.23
45482--45625	41	3.2	45	78	13	120	52	6	4	36	1.48
45530--45639	41	2.7	41	91	1	177	54	3	5	36	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49521--49568	10	4.7	10	86	2	51	50	18	27	4	1.65
49531--49570	10	4.0	10	90	0	62	52	17	27	2	1.57
71161--71283	60	2.0	61	82	4	151	34	21	4	39	1.75
71171--71299	60	2.2	60	79	8	145	35	20	5	37	1.76
71402--71681	60	4.7	60	81	9	322	40	6	21	31	1.79
71403--71681	120	2.3	120	94	0	495	40	6	20	31	1.79
73976--74018	21	2.0	21	81	0	50	30	25	25	18	1.98
74697--74757	23	2.7	23	89	0	95	22	27	24	24	2.00
75706--75768	26	2.4	27	76	12	69	76	6	4	12	1.14
75831--75864	17	2.0	17	88	0	50	70	0	14	14	1.17
75896--75980	32	2.6	30	83	12	89	69	4	3	22	1.23
75900--76085	78	2.4	80	80	11	199	69	1	3	25	1.13
75961--76032	29	2.6	28	76	10	78	73	0	2	23	0.96
76019--76084	18	3.8	17	76	13	71	68	0	4	27	1.09
76006--76085	35	2.3	35	91	2	124	70	0	3	26	1.04
75932--76077	58	2.6	53	79	15	134	71	0	3	24	1.06
76119--76161	16	2.8	16	85	3	61	65	0	0	34	0.93
75942--76180	17	14.3	16	67	24	81	66	2	3	28	1.20
86307--86727	217	2.0	215	88	3	632	36	13	14	36	1.85
87137--87479	42	8.1	42	89	1	436	34	25	25	14	1.94
87137--87479	169	2.0	168	87	1	490	34	25	25	14	1.94

Tables:   1

The End!