Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003457.1 Hibiscus syriacus cultivar Beakdansim tig00007306_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50354
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:7820 original size:52 final size:53
Alignment explanation
Indices: 7739--7839 Score: 150
Period size: 52 Copynumber: 1.9 Consensus size: 53
7729 AATACTTCGC
* ** *
7739 TTAGGATGAAAACCCGAGAGGGCGTCCTAAGTTGAAAAAA-AAAAAAGAACGT
1 TTAGGATGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAGAAAAAAGAACGT
*
7791 TTAGGGTGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAGAAAAAAGA
1 TTAGGATGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAGAAAAAAGA
7840 GGAAAAAAGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
52 35 0.81
53 8 0.19
ACGTcount: A:0.49, C:0.14, G:0.24, T:0.14
Consensus pattern (53 bp):
TTAGGATGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAGAAAAAAGAACGT
Found at i:8763 original size:105 final size:105
Alignment explanation
Indices: 8581--9038 Score: 882
Period size: 105 Copynumber: 4.4 Consensus size: 105
8571 AGGTTTTACC
8581 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTACAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTACAGACAACGCAAGTTCAACTTCACG
8646 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
8686 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTACAGAAAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTACAGACAACGCAAGTTCAACTTCACG
8751 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
8791 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTACAGACAACGCAAGTTCAACTTCACG
8856 ACGAA-GGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
8895 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTACAGACAACGCAAGTTCAACTTCACG
8960 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
9000 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
9039 CTGAACAATA
Statistics
Matches: 349, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
104 104 0.30
105 245 0.70
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTACAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
Found at i:8946 original size:209 final size:210
Alignment explanation
Indices: 8581--9039 Score: 884
Period size: 209 Copynumber: 2.2 Consensus size: 210
8571 AGGTTTTACC
*
8581 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTACAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
8646 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
8711 AAGGATATTGGACTACAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
131 AAGGATATTGGACTACAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
8776 AACATTTCTCAAATT
196 AACATTTCTCAAATT
8791 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
8856 ACGAA-GGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
* *
8920 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
131 AAGGATATTGGACTACAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
8985 AACATTTCTCAAATT
196 AACATTTCTCAAATT
9000 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
9040 TGAACAATAC
Statistics
Matches: 246, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
209 177 0.72
210 69 0.28
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (210 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
AAGGATATTGGACTACAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
AACATTTCTCAAATT
Found at i:11006 original size:2 final size:2
Alignment explanation
Indices: 10996--11029 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
10986 TTGTATTTAC
* *
10996 AT AT GT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11030 TCATTTTACC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:11008 original size:12 final size:12
Alignment explanation
Indices: 10993--11029 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
10983 TTTTTGTATT
*
10993 TACATATGTATA
1 TACATATATATA
11005 TACATATATATA
1 TACATATATATA
*
11017 TATATATATATA
1 TACATATATATA
11029 T
1 T
11030 TCATTTTACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (12 bp):
TACATATATATA
Found at i:11140 original size:21 final size:21
Alignment explanation
Indices: 11103--11146 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
11093 CATTCATTAA
*
11103 TTATTTATTCCATTTTTA-TT
1 TTATTTATTCCACTTTTACTT
*
11123 TTATTTATTTCCCCTTTTACTT
1 TTATTTA-TTCCACTTTTACTT
11145 TT
1 TT
11147 TACTATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 9 0.45
22 4 0.20
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (21 bp):
TTATTTATTCCACTTTTACTT
Found at i:11194 original size:19 final size:18
Alignment explanation
Indices: 11143--11198 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 18
11133 CCCCTTTTAC
*
11143 TTTTTACTATTATTATTAT
1 TTTTTATTATTA-TATTAT
11162 TTATTTATGCTATTATATTAT
1 TT-TTTAT--TATTATATTAT
11183 ATTTTTATTATTATAT
1 -TTTTTATTATTATAT
11199 ACGTATATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
19 10 0.31
20 4 0.12
21 11 0.34
22 7 0.22
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.66
Consensus pattern (18 bp):
TTTTTATTATTATATTAT
Found at i:14217 original size:31 final size:30
Alignment explanation
Indices: 14140--14246 Score: 144
Period size: 30 Copynumber: 3.6 Consensus size: 30
14130 AAAAAAATTG
14140 AATACTTTAAGTACTT-TTTTGACCAAAAA
1 AATACTTTAAGTACTTATTTTGACCAAAAA
*
14169 AATACTTTAGGTACTTATTTTGACCAAAAA
1 AATACTTTAAGTACTTATTTTGACCAAAAA
** * *
14199 GGTAATTTTAAGTACTTATTTTGACAAAAAA
1 AAT-ACTTTAAGTACTTATTTTGACCAAAAA
*
14230 AATACTTTAGGTACTTA
1 AATACTTTAAGTACTTA
14247 AATAAAAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
29 15 0.23
30 26 0.39
31 25 0.38
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.38
Consensus pattern (30 bp):
AATACTTTAAGTACTTATTTTGACCAAAAA
Found at i:14280 original size:61 final size:60
Alignment explanation
Indices: 14113--14269 Score: 169
Period size: 61 Copynumber: 2.6 Consensus size: 60
14103 TTAAACAATG
* *
14113 CTTTAGGTACTTAGATAAAAAAAATTGA-ATACTTTAAGTACTT-TTTTGACCAAAAAAATA
1 CTTTAGGTACTTAAAT-AAAAAAA-TGATATACTTTAAGTACTTATTTTGACAAAAAAAATA
** * * *
14173 CTTTAGGTACTTATTTTGACCAAAAA-GGTA-ATTTTAAGTACTTATTTTGACAAAAAAAATA
1 CTTTAGGTACTTA-AAT-A-AAAAAATGATATACTTTAAGTACTTATTTTGACAAAAAAAATA
14234 CTTTAGGTACTTAAATAAAAAATATGATATACTTTA
1 CTTTAGGTACTTAAATAAAAAA-ATGATATACTTTA
14270 GGCATTTATT
Statistics
Matches: 78, Mismatches: 12, Indels: 13
0.76 0.12 0.13
Matches are distributed among these distances:
58 4 0.05
59 2 0.03
60 30 0.38
61 37 0.47
62 5 0.06
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (60 bp):
CTTTAGGTACTTAAATAAAAAAATGATATACTTTAAGTACTTATTTTGACAAAAAAAATA
Found at i:15040 original size:15 final size:17
Alignment explanation
Indices: 14995--15042 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
14985 AAAATAAAAA
*
14995 TAAAAAAATATATTTAT
1 TAAATAAATATATTTAT
15012 TAAATAAATATATTTA-
1 TAAATAAATATATTTAT
*
15028 TAATTAAAT-TATTTA
1 TAAATAAATATATTTA
15043 AACCGATCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 6 0.21
16 8 0.28
17 15 0.52
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TAAATAAATATATTTAT
Found at i:22579 original size:75 final size:76
Alignment explanation
Indices: 22403--22611 Score: 278
Period size: 75 Copynumber: 2.8 Consensus size: 76
22393 CAAAGTCAAA
* * * **
22403 AATTACAGATTGCTCAGAGGGAACCGATTCCCCCCCATAGGAGGAACCGATTCCCCCCTAAATGG
1 AATTCCAGAATGCTCGGAGGGAACCGATT--CCCCCATAGGAGGAACCGATTCCCCCCTAAACAG
22468 TTTTGGCCCCGAG
64 TTTTGGCCCCGAG
* *
22481 ATTTCCAGAATGCTCGAAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTT
*
22546 TT-GCTCCGAG
66 TTGGCCCCGAG
* * * *
22556 AATTCCAGTATGCTCGGAGGGAACCGATCCCCCCA-AGGGGGTACCGATTCCCCCCT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCCT
22612 TGTACAACGG
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
74 19 0.16
75 38 0.32
76 36 0.31
78 24 0.21
ACGTcount: A:0.25, C:0.32, G:0.23, T:0.20
Consensus pattern (76 bp):
AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTT
TTGGCCCCGAG
Found at i:24550 original size:21 final size:21
Alignment explanation
Indices: 24508--24551 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
24498 ACTCCGGGAG
* *
24508 CTAGTTCCTCACGAGCTGCTC
1 CTAGCTCCTCACGAGCTCCTC
* *
24529 CTAGCTCCTCTCGTGCTCCTC
1 CTAGCTCCTCACGAGCTCCTC
24550 CT
1 CT
24552 CCGGCTCCGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.43, G:0.16, T:0.32
Consensus pattern (21 bp):
CTAGCTCCTCACGAGCTCCTC
Found at i:25633 original size:20 final size:20
Alignment explanation
Indices: 25608--25646 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25598 TTTTCAAGGG
25608 CATGCACCGATGCACCAATC
1 CATGCACCGATGCACCAATC
* *
25628 CATGCATCGATGCATCAAT
1 CATGCACCGATGCACCAAT
25647 TAATTTCTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.15, T:0.21
Consensus pattern (20 bp):
CATGCACCGATGCACCAATC
Found at i:27069 original size:18 final size:18
Alignment explanation
Indices: 27024--27070 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
27014 AAACGAATAT
*
27024 TAAATAAATCAAAAGGAAA
1 TAAATAAAT-AAAAAGAAA
*
27043 -AAATAAAATAAAAATAAA
1 TAAAT-AAATAAAAAGAAA
27061 TAAATAAATA
1 TAAATAAATA
27071 CTAGATAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.19
Consensus pattern (18 bp):
TAAATAAATAAAAAGAAA
Found at i:27225 original size:17 final size:17
Alignment explanation
Indices: 27203--27244 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
27193 GAAAGAAAAA
27203 ATAATTATTGTTGAAAC
1 ATAATTATTGTTGAAAC
27220 ATAATTATTGTTGAAAC
1 ATAATTATTGTTGAAAC
27237 ATAATTAT
1 ATAATTAT
27245 AAATGTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43
Consensus pattern (17 bp):
ATAATTATTGTTGAAAC
Found at i:28064 original size:20 final size:19
Alignment explanation
Indices: 28020--28057 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
28010 CCTGAAATAG
*
28020 ATTTCACTCTTTTTTTTTC
1 ATTTCACTCTGTTTTTTTC
28039 AGTTTC-CTCTGTTTTTTTC
1 A-TTTCACTCTGTTTTTTTC
28058 GTATTTCGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.08, C:0.21, G:0.05, T:0.66
Consensus pattern (19 bp):
ATTTCACTCTGTTTTTTTC
Found at i:28864 original size:44 final size:45
Alignment explanation
Indices: 28810--28910 Score: 116
Period size: 45 Copynumber: 2.3 Consensus size: 45
28800 ACATTCAATA
* * *
28810 TGTATCGATGCAC-TCTTTAAAGAAG-AAACATCGAATGTAATTAG
1 TGTATCGATGCACGCCCTTAAA-AAGAAAACATCGAAGGTAATTAG
* * * *
28854 TGTATTGATGCACGCCCTTAAAATGAAAACATCGAAGGTGATTGG
1 TGTATCGATGCACGCCCTTAAAAAGAAAACATCGAAGGTAATTAG
28899 TGTATCGATGCA
1 TGTATCGATGCA
28911 TGGGTAGTGT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
44 14 0.30
45 33 0.70
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (45 bp):
TGTATCGATGCACGCCCTTAAAAAGAAAACATCGAAGGTAATTAG
Found at i:28963 original size:20 final size:20
Alignment explanation
Indices: 28938--28975 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
28928 CACATGTTAA
28938 AGAATGCATCGATGCACTGT
1 AGAATGCATCGATGCACTGT
*
28958 AGAATGTATCGATGCACT
1 AGAATGCATCGATGCACT
28976 TCAAGGGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (20 bp):
AGAATGCATCGATGCACTGT
Found at i:33173 original size:20 final size:20
Alignment explanation
Indices: 33096--33169 Score: 130
Period size: 20 Copynumber: 3.7 Consensus size: 20
33086 GTTTGAAGCG
33096 TGAGGGGAATCGGTACCCCT
1 TGAGGGGAATCGGTACCCCT
33116 TGAGGGGAATCGGTACCCCT
1 TGAGGGGAATCGGTACCCCT
* *
33136 TGAGGAGAATCGGTTCCCCT
1 TGAGGGGAATCGGTACCCCT
33156 TGAGGGGAATCGGT
1 TGAGGGGAATCGGT
33170 TCCCTAAGTG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.20, C:0.22, G:0.36, T:0.22
Consensus pattern (20 bp):
TGAGGGGAATCGGTACCCCT
Found at i:33525 original size:21 final size:23
Alignment explanation
Indices: 33483--33525 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
33473 TAATTATATC
33483 GAAAATACTTAGAAAATCATTTG
1 GAAAATACTTAGAAAATCATTTG
*
33506 GAAAAT-CTTA-AAATTCATTT
1 GAAAATACTTAGAAAATCATTT
33526 ATCTTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 4 0.21
23 6 0.32
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (23 bp):
GAAAATACTTAGAAAATCATTTG
Found at i:45783 original size:21 final size:20
Alignment explanation
Indices: 45759--45801 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 20
45749 TGTCTTATCC
45759 TCAATGAATGTTTAACATCTT
1 TCAAT-AATGTTTAACATCTT
45780 TC---AATGTTTAACATCTT
1 TCAATAATGTTTAACATCTT
45797 TCAAT
1 TCAAT
45802 TAATACGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 7
0.73 0.00 0.27
Matches are distributed among these distances:
17 17 0.89
21 2 0.11
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.44
Consensus pattern (20 bp):
TCAATAATGTTTAACATCTT
Found at i:45787 original size:17 final size:17
Alignment explanation
Indices: 45765--45801 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
45755 ATCCTCAATG
45765 AATGTTTAACATCTTTC
1 AATGTTTAACATCTTTC
45782 AATGTTTAACATCTTTC
1 AATGTTTAACATCTTTC
45799 AAT
1 AAT
45802 TAATACGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.46
Consensus pattern (17 bp):
AATGTTTAACATCTTTC
Found at i:46903 original size:2 final size:2
Alignment explanation
Indices: 46896--46927 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
46886 ATCCTAACTC
46896 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46928 TACCCAAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.