Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003458.1 Hibiscus syriacus cultivar Beakdansim tig00007307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110590

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5715--5774
22
2.7
22
92
7
95
33
8
20
38
1.82
6462--6520
14
4.1
14
80
4
55
54
25
0
20
1.45
6541--6568
14
2.0
14
100
0
56
35
28
0
35
1.58
12363--12431
33
2.1
32
91
2
111
14
11
33
40
1.82
13900--13951
3
17.3
3
100
0
104
67
0
0
32
0.91
21955--22010
14
4.3
14
73
17
66
7
12
25
55
1.62
21962--22031
24
2.9
24
85
4
97
11
10
18
60
1.58
21955--22030
38
2.0
37
82
10
91
10
11
21
56
1.64
22830--22881
11
4.6
11
90
4
86
26
17
26
28
1.97
22830--22881
23
2.3
22
90
3
86
26
17
26
28
1.97
23116--23164
16
3.1
16
93
0
80
6
14
26
53
1.64
23110--23148
10
4.3
10
75
24
50
7
12
23
56
1.62
23233--23263
16
1.9
16
100
0
62
6
12
22
58
1.58
24038--24110
30
2.3
32
83
11
96
38
1
1
58
1.15
24536--24598
31
2.0
31
96
0
117
30
4
19
46
1.70
27039--27075
19
1.9
20
88
5
58
51
0
0
48
1.00
27431--27465
16
2.2
16
89
0
52
20
20
11
48
1.79
28367--28477
54
2.1
53
84
5
143
38
29
8
23
1.83
30763--30791
2
14.5
2
100
0
58
48
0
0
51
1.00
36034--36197
89
1.9
88
89
1
256
26
6
15
51
1.67
41631--42025
207
1.9
207
88
1
603
38
17
23
21
1.93
63944--63991
22
2.2
22
85
7
62
60
0
2
37
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96921--96962
18
2.4
17
92
4
66
59
0
0
40
0.97
106933--106965
14
2.4
14
94
0
57
30
30
6
33
1.82

Tables:   1

The End!