Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003459.1 Hibiscus syriacus cultivar Beakdansim tig00007309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58921

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
779--840
30
2.0
31
96
3
117
45
19
4
30
1.71
1239--1303
23
2.9
22
77
6
67
56
1
0
41
1.08
1395--1446
2
26.5
2
92
3
88
50
0
1
48
1.12
3788--3936
29
5.2
28
81
8
142
32
4
16
47
1.65
4595--4622
2
14.0
2
100
0
56
50
0
0
50
1.00
11029--11111
29
2.9
28
83
7
87
27
2
15
54
1.54
11092--11163
26
2.6
26
71
26
67
36
0
8
55
1.30
11096--11158
29
2.1
29
88
8
92
31
0
6
61
1.21
11146--11210
30
2.2
28
78
10
67
36
4
16
41
1.70
14230--14263
3
11.3
3
100
0
68
32
0
0
67
0.91
15687--15755
33
2.1
33
91
2
113
40
33
11
14
1.82
16989--17509
280
1.9
277
80
8
610
44
8
8
38
1.64
21470--21497
14
2.0
14
100
0
56
35
0
28
35
1.58
22268--22326
21
2.7
21
94
5
100
37
20
8
33
1.83
22511--22558
24
2.0
24
100
0
96
20
25
16
37
1.93
33636--33754
39
3.1
38
80
10
134
46
0
16
36
1.54
36219--36287
23
3.0
23
80
0
84
30
23
26
20
1.98
36955--37020
20
3.0
22
93
6
109
25
27
27
19
1.99
37296--37364
29
2.4
29
92
0
111
39
13
8
39
1.75
37657--37824
63
2.6
64
85
6
189
18
25
28
27
1.98
41340--41402
23
2.7
23
82
0
90
17
25
26
30
1.97
46212--46286
38
2.0
38
89
0
114
41
18
13
26
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51557--51608
21
2.3
23
74
9
54
34
3
1
59
1.27
51753--51803
15
3.5
15
76
13
61
56
0
1
41
1.10
53380--53410
2
15.5
2
100
0
62
51
0
48
0
1.00

Tables:   1

The End!