genome.fa.s3462.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003462.1 Hibiscus syriacus cultivar Beakdansim tig00007317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59209

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--90	40	2.2	40	96	0	162	42	22	15	20	1.89
1--90	20	4.5	20	88	0	126	42	22	15	20	1.89
744--790	24	2.0	24	87	8	69	25	14	21	38	1.92
963--987	12	2.1	12	100	0	50	72	0	28	0	0.86
3253--3485	72	3.3	71	80	14	270	45	16	22	15	1.85
3239--3507	52	5.1	53	86	9	376	45	17	22	14	1.84
3220--3512	72	4.2	69	75	14	253	44	17	22	15	1.86
3522--3619	20	5.4	19	83	14	127	14	23	17	44	1.85
3490--3598	53	2.1	51	86	3	146	18	22	19	39	1.92
3503--3619	20	6.7	18	78	19	115	13	24	17	43	1.86
3724--3760	14	2.6	14	91	0	65	45	21	0	32	1.52
5132--5194	21	3.0	21	70	9	65	20	19	36	23	1.95
5639--5792	19	8.3	19	77	13	101	46	24	18	10	1.81
5639--5792	38	4.2	39	76	14	137	46	24	18	10	1.81
5655--5797	19	7.7	19	81	6	159	46	23	20	9	1.80
5809--5899	14	5.9	14	69	20	56	8	19	25	46	1.79
5793--5915	33	3.7	33	86	3	167	9	17	26	45	1.80
5793--5847	19	3.2	19	75	24	75	5	16	30	47	1.69
8075--8117	21	2.0	21	81	0	50	30	30	25	13	1.94
8097--8247	67	2.2	68	89	2	225	28	28	26	16	1.97
8547--8617	29	2.5	28	90	2	106	39	9	14	36	1.79
8632--8708	30	2.5	30	91	2	118	40	5	23	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10118--10194	21	3.7	21	81	6	102	14	23	15	46	1.82
10274--10344	33	2.2	33	94	0	124	47	16	23	11	1.79
10702--10956	20	12.6	20	81	5	291	20	18	26	34	1.95
10706--10934	81	2.8	81	94	0	388	21	18	25	34	1.96
15955--15984	2	15.0	2	100	0	60	50	0	0	50	1.00
25717--25775	20	3.0	20	97	0	109	38	28	16	15	1.89
25717--25794	40	2.0	40	84	5	104	42	24	15	17	1.88
25764--25859	40	2.4	40	83	0	129	43	18	14	22	1.87
25790--25854	20	3.2	20	77	0	76	41	20	16	21	1.90
25827--26072	126	2.0	126	89	0	375	34	20	17	27	1.95
25935--26247	158	2.1	152	84	7	413	32	18	20	28	1.96
26100--26148	20	2.5	20	82	0	71	38	20	18	22	1.93
26318--26382	20	3.2	20	93	0	112	20	16	21	41	1.90
26408--26446	20	2.0	20	84	0	51	20	10	33	35	1.86
38106--38138	16	2.1	15	94	5	57	69	0	0	30	0.88
51371--51465	29	3.2	29	70	11	93	23	23	12	41	1.88
51362--51475	60	1.9	59	90	1	183	21	22	14	41	1.90
58758--58794	20	1.9	19	89	10	58	48	10	21	18	1.78

Tables:   1

The End!