genome.fa.s3463.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003463.1 Hibiscus syriacus cultivar Beakdansim tig00007318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94900

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1865--1889	12	2.1	12	100	0	50	0	28	0	72	0.86
3105--3154	19	2.5	20	96	3	93	32	28	24	16	1.96
3201--3244	19	2.3	19	92	0	70	18	18	18	45	1.86
3250--3288	20	2.0	20	94	0	69	12	10	30	46	1.75
3371--3407	14	2.6	14	86	0	56	48	21	0	29	1.50
5258--5323	20	3.3	20	84	0	69	40	25	18	15	1.89
5333--5390	14	3.9	14	75	16	62	50	24	15	10	1.75
5321--5395	32	2.3	33	90	2	116	49	22	16	12	1.78
5424--5481	14	3.9	14	81	16	71	10	17	22	50	1.76
5407--5497	32	2.8	33	93	3	157	12	18	20	48	1.80
5482--5536	20	2.8	19	83	8	65	16	23	23	36	1.94
6018--6062	18	2.5	18	88	0	72	13	15	44	26	1.83
7382--7440	20	3.0	20	82	0	64	42	20	18	18	1.90
7694--7742	22	2.3	21	80	10	55	24	14	40	20	1.89
7701--7744	22	2.0	22	90	0	70	20	15	43	20	1.88
7912--8046	20	6.7	20	78	7	130	25	17	23	33	1.96
7912--8049	61	2.3	61	87	0	204	24	17	23	34	1.96
7912--8067	61	2.6	61	83	2	170	23	19	23	33	1.97
8834--8905	35	2.1	35	89	5	110	41	13	9	34	1.78
10007--10066	30	2.0	30	96	0	111	28	28	13	30	1.94
10925--11147	112	2.0	111	96	0	410	27	18	20	33	1.96
11164--11210	2	23.5	2	86	0	67	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11164--11222	30	2.0	30	96	0	109	44	0	0	55	0.99
12066--12124	28	2.2	26	82	11	66	74	0	11	13	1.07
12066--12118	26	2.0	26	82	7	63	73	0	13	13	1.10
12090--12137	16	3.0	16	78	6	53	79	0	6	14	0.92
18732--18808	27	3.0	23	77	17	73	50	9	6	33	1.60
25599--25667	3	23.0	3	96	0	129	65	0	1	33	1.02
25924--26560	113	5.6	112	92	1	918	27	18	14	38	1.90
27354--27651	105	2.8	105	98	0	569	34	21	12	30	1.91
28433--28478	19	2.6	19	86	10	62	54	6	8	30	1.56
28808--28865	1	58.0	1	78	0	53	0	12	0	87	0.53
28817--28868	7	7.3	7	85	12	70	0	13	0	86	0.57
28808--28865	17	3.2	18	85	7	82	0	12	0	87	0.53
41607--41675	3	23.0	3	100	0	138	66	0	0	33	0.92
42080--42154	37	2.0	37	82	10	91	49	4	1	45	1.29
43127--43152	2	13.0	2	100	0	52	50	0	0	50	1.00
44905--44947	15	2.8	16	78	3	52	18	0	9	72	1.11
44905--44955	22	2.3	21	81	15	59	19	0	7	72	1.08
48495--48574	4	20.0	4	94	0	97	50	8	0	41	1.33
48479--48533	12	4.6	12	76	0	56	50	23	0	25	1.49
48875--48917	19	2.3	19	88	8	61	76	0	18	4	0.95
48813--48920	33	3.2	33	77	15	105	71	1	19	7	1.19
49055--49421	181	2.0	181	98	0	707	28	20	11	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52282--52543	91	2.9	90	88	4	391	34	14	24	25	1.94
52447--52720	117	2.4	115	85	1	361	36	17	22	23	1.95
62993--63059	20	3.4	19	75	8	62	19	0	7	73	1.07
62977--63044	23	3.0	22	78	18	68	19	0	7	73	1.06
62976--63043	16	4.1	16	74	16	59	19	0	5	75	1.01
66461--66520	31	1.9	31	93	0	102	46	5	11	36	1.62
66667--66713	21	2.3	20	85	3	67	40	4	4	51	1.41
69629--69734	31	3.4	31	76	2	86	27	27	27	17	1.98
69611--69734	63	2.0	63	80	6	144	27	25	27	19	1.99
71240--71275	18	2.0	18	88	0	54	30	16	0	52	1.44
74272--74343	2	36.5	2	97	2	137	50	0	0	50	1.00
78208--78258	27	2.0	25	88	11	77	50	3	5	39	1.45
78504--78540	3	12.3	3	100	0	74	32	0	0	67	0.91
78721--78747	3	9.0	3	100	0	54	33	0	0	66	0.92
80967--81019	21	2.6	21	91	5	83	33	13	30	22	1.92
81552--81634	23	3.7	23	79	9	84	26	15	27	30	1.96
83726--83768	7	6.4	7	86	10	54	23	18	0	58	1.40
83726--83778	13	4.1	13	82	4	63	26	18	0	54	1.44
83813--83874	19	3.4	18	80	6	72	33	16	3	46	1.63
87729--87771	20	2.2	20	83	4	52	34	9	25	30	1.87

Tables:   1

The End!