genome.fa.s3464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003464.1 Hibiscus syriacus cultivar Beakdansim tig00007319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79195

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1153--1199	18	2.6	18	86	10	60	34	0	0	65	0.93
1482--1516	17	2.1	17	94	0	61	51	0	0	48	1.00
1656--1691	13	2.8	13	95	0	63	72	0	2	25	0.98
1663--1707	19	2.4	19	84	0	54	64	0	0	35	0.94
9341--9376	16	2.2	17	90	5	56	27	44	11	16	1.82
14007--14037	16	1.9	16	100	0	62	61	6	0	32	1.21
19749--19879	51	2.7	48	86	6	190	49	14	9	25	1.74
20701--20741	17	2.4	17	80	19	50	53	0	7	39	1.29
20755--20787	17	1.9	17	93	0	57	33	0	0	66	0.92
24326--24378	21	2.5	21	81	0	70	20	22	18	37	1.94
24368--24481	20	5.7	20	88	2	174	38	19	21	21	1.93
24368--24499	40	3.3	40	88	3	176	37	20	21	21	1.95
25035--25107	33	2.2	34	85	7	96	15	19	24	41	1.89
25079--25143	20	3.2	20	86	0	67	15	15	24	44	1.85
25095--25149	20	2.8	20	88	0	74	10	14	23	50	1.74
27029--27263	20	12.4	20	79	12	210	42	20	18	18	1.89
27310--27376	20	3.3	20	89	0	71	22	17	20	38	1.93
27862--27905	21	2.3	19	88	11	63	20	34	20	25	1.97
29484--29559	33	2.3	34	95	2	136	46	19	22	11	1.82
29574--29649	33	2.3	34	93	2	127	14	23	18	43	1.87
29641--29735	20	4.8	20	88	3	147	20	21	25	33	1.97
32144--32198	24	2.3	24	84	6	67	38	16	18	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33027--33077	20	2.5	20	90	0	84	27	19	23	29	1.98
35523--35938	206	2.0	204	98	1	796	29	20	22	26	1.99
36003--36065	11	5.9	11	71	14	51	55	3	1	39	1.25
36197--36236	14	2.9	14	96	0	71	50	22	2	25	1.62
36188--36277	27	3.3	27	75	6	85	43	32	4	20	1.71
36389--36437	21	2.3	21	92	0	80	36	38	8	16	1.78
36389--36437	14	3.5	14	80	0	53	36	38	8	16	1.78
37801--37844	11	3.9	11	84	3	61	27	2	27	43	1.67
39644--39713	29	2.4	29	81	9	81	48	17	17	17	1.81
42390--42465	2	41.5	2	80	17	85	46	0	0	53	1.00
44031--44071	8	4.7	9	82	14	50	73	0	9	17	1.09
44029--44068	18	2.4	16	83	8	53	72	0	12	15	1.12
48075--48163	38	2.3	38	96	0	160	22	26	1	49	1.57
48218--48269	19	2.8	18	80	5	68	32	17	1	48	1.58
51008--51077	31	2.3	30	76	11	72	31	21	7	40	1.80
52528--52745	104	2.1	103	95	0	391	25	13	24	36	1.92
52761--52823	23	2.7	23	87	4	92	20	26	26	25	1.99
58924--58961	20	1.9	20	88	0	58	23	34	31	10	1.89
59440--59658	104	2.1	104	94	0	386	24	12	24	38	1.90
59675--59737	23	2.7	23	87	4	92	20	26	26	25	1.99
66325--66387	29	2.1	30	85	2	83	42	11	12	33	1.78
72754--72803	21	2.4	21	89	0	82	14	10	12	64	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75327--75412	31	2.8	31	92	0	136	43	10	19	26	1.84

Tables:   1

The End!