genome.fa.s3465.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003465.1 Hibiscus syriacus cultivar Beakdansim tig00007329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84454

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8379--8444	33	2.0	33	100	0	132	30	3	21	45	1.67
13729--13763	17	2.1	17	100	0	70	28	34	5	31	1.81
22867--24379	755	2.0	747	88	5	2240	31	19	14	34	1.91
25499--25562	31	2.2	28	80	17	85	42	6	15	35	1.72
26051--26084	14	2.4	15	85	14	54	50	26	0	23	1.50
26052--26104	21	2.5	21	81	0	61	50	26	0	22	1.49
29616--29658	20	2.3	19	88	11	70	23	30	9	37	1.86
29621--29658	20	1.9	20	100	0	76	23	28	10	36	1.88
30785--30829	21	2.1	21	87	0	63	31	28	24	15	1.96
31434--31480	23	2.0	24	91	4	78	44	0	21	34	1.52
31658--31813	31	5.0	31	89	1	233	21	20	22	35	1.96
32543--32580	18	2.1	19	90	5	60	36	23	0	39	1.55
39257--39282	11	2.4	11	100	0	52	76	0	7	15	0.99
42361--42399	17	2.4	17	86	4	62	25	0	5	69	1.09
44677--44722	24	1.9	24	86	8	67	17	4	13	65	1.42
54912--54959	22	2.1	23	88	3	71	25	18	10	45	1.81
54904--54959	22	2.5	22	82	5	69	25	16	10	48	1.78
56943--57000	29	2.0	29	93	0	98	53	5	12	29	1.59
64595--64641	23	2.0	24	84	12	62	59	8	2	29	1.39
67650--68532	128	6.9	128	94	1	1540	23	24	20	32	1.98
69922--70013	33	2.8	33	85	4	107	38	3	4	54	1.37
70543--70603	21	3.0	21	85	7	72	18	21	37	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83010--83060	25	2.0	25	96	0	93	29	15	35	19	1.93

Tables:   1

The End!