Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003466.1 Hibiscus syriacus cultivar Beakdansim tig00007330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80727

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1969--2014
24
1.9
24
86
0
65
58
13
8
19
1.60
3192--3257
20
3.2
22
62
24
52
24
12
15
48
1.78
3189--3274
40
2.2
40
97
0
163
24
10
15
50
1.75
8102--8156
22
2.5
23
88
8
80
34
23
9
32
1.86
26346--26382
18
2.1
18
90
10
58
24
24
5
45
1.74
31633--31854
31
7.1
31
87
4
268
28
16
19
35
1.93
31633--31854
63
3.5
62
83
5
270
28
16
19
35
1.93
32515--32558
21
2.1
21
86
0
61
29
22
22
25
1.99
32598--32646
19
2.6
19
90
0
71
28
16
12
42
1.84
33416--33470
22
2.5
22
96
0
101
21
21
18
38
1.94
33531--33569
19
1.9
19
85
10
51
35
15
7
41
1.76
33764--33797
2
16.5
2
93
6
59
50
2
0
47
1.16
35482--35539
19
3.1
18
77
5
62
10
18
29
41
1.84
35695--35723
14
2.1
14
100
0
58
79
0
6
13
0.93
35767--36078
38
8.8
37
81
11
318
44
5
4
46
1.45
35752--36137
38
10.7
36
78
14
309
44
6
3
46
1.46
36693--37512
165
5.0
165
97
0
1480
23
21
25
29
1.99
42719--42759
2
20.5
2
100
0
82
51
0
0
48
1.00
43777--43834
19
3.1
18
77
5
62
10
18
29
41
1.84
43990--44018
14
2.1
14
100
0
58
79
0
6
13
0.93
44062--44366
38
8.7
35
82
10
260
44
5
4
46
1.45
44062--44370
36
8.8
37
82
11
275
44
5
4
46
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46203--46279
21
3.7
21
76
11
77
33
33
9
23
1.86
46261--46314
21
2.6
21
78
0
63
29
37
16
16
1.91
48120--48196
38
2.0
38
89
0
118
41
12
16
28
1.86
58901--58965
29
2.2
29
86
5
87
21
18
21
38
1.93
61768--61829
22
2.7
23
82
9
74
24
19
27
29
1.98
68495--68693
85
2.4
84
84
5
251
52
4
4
38
1.41
78641--78674
14
2.5
13
86
9
50
20
8
2
67
1.31

Tables:   1

The End!