genome.fa.s3467.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003467.1 Hibiscus syriacus cultivar Beakdansim tig00007331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93348

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020--1068	18	2.5	21	90	9	77	30	12	12	44	1.78
1020--1082	21	3.1	21	84	10	62	33	11	9	46	1.72
1370--1427	20	3.0	20	85	7	66	25	31	18	24	1.98
1775--1857	34	2.4	34	87	0	121	32	16	30	20	1.95
4387--4438	23	2.2	24	93	3	88	48	5	17	28	1.70
7517--7657	41	3.4	42	74	4	126	31	13	24	29	1.93
7522--7675	82	1.9	83	90	1	247	29	12	25	31	1.93
11148--11204	28	2.0	28	96	0	105	24	17	12	45	1.83
13098--13127	2	15.0	2	100	0	60	50	0	0	50	1.00
18703--18736	2	17.0	2	100	0	68	50	0	0	50	1.00
18861--18898	2	19.0	2	100	0	76	50	0	0	50	1.00
32840--32908	36	1.9	36	96	0	129	33	18	21	26	1.97
33250--33328	18	4.5	18	76	12	92	20	7	1	70	1.18
33238--33297	30	2.1	28	87	6	84	23	5	1	70	1.16
33237--33308	34	2.1	34	89	5	110	23	5	1	69	1.17
34192--34251	30	2.0	30	87	6	86	30	6	18	45	1.75
34333--34373	21	2.0	21	90	9	66	19	39	17	24	1.92
34332--34402	29	2.4	30	81	9	85	23	35	16	23	1.95
35786--35833	19	2.5	20	82	3	62	52	6	12	29	1.63
37096--37164	30	2.2	30	82	15	86	36	5	17	40	1.74
37105--37164	29	2.0	30	90	6	95	35	6	16	41	1.75
37342--37416	20	3.7	20	75	3	78	18	24	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37342--37421	41	2.0	41	87	0	115	20	22	28	28	1.98
37518--37557	21	1.9	21	85	10	55	40	35	10	15	1.80
47425--47458	17	2.0	17	100	0	68	29	35	17	17	1.93
48258--48673	108	3.8	108	78	9	460	37	14	14	33	1.87
48205--48656	225	2.0	225	93	1	764	36	15	15	32	1.88
49432--49483	15	3.5	15	91	0	77	34	1	30	32	1.69
51972--52297	66	4.9	66	92	1	501	37	13	17	32	1.88
60148--60406	66	3.9	66	91	0	394	37	12	17	32	1.87
60943--60994	13	4.0	13	82	0	68	32	19	15	32	1.93
61063--61105	13	3.3	13	96	0	77	30	18	6	44	1.76
60882--61157	111	2.5	110	78	7	274	30	19	17	32	1.95
61177--61215	2	19.5	2	100	0	78	48	0	0	51	1.00
68344--68424	40	2.0	40	85	4	110	24	13	11	50	1.74
68353--68424	20	3.6	20	86	5	101	23	13	11	51	1.73
68625--68668	20	2.2	20	84	8	54	50	22	6	20	1.72
68804--68849	21	2.2	21	88	3	67	39	10	19	30	1.86
69915--70370	229	2.0	228	90	2	727	35	20	8	34	1.84
71102--71155	20	2.7	19	80	8	54	20	18	16	44	1.87
78303--78386	21	3.8	21	78	15	80	20	22	32	25	1.98
78302--78374	24	3.2	23	83	7	87	20	20	36	21	1.95
83733--83770	19	2.0	19	89	0	58	15	21	39	23	1.92
84748--84801	21	2.6	21	81	0	54	38	9	5	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85491--85552	21	3.0	21	73	0	61	22	17	32	27	1.97
87135--87203	26	2.5	27	78	19	72	56	4	1	37	1.28
87386--87439	17	3.0	17	86	8	63	61	5	3	29	1.36
87804--87833	14	2.1	14	93	0	51	30	50	13	6	1.67
88140--88196	2	29.0	2	96	3	107	49	0	0	50	1.00
89400--89431	16	2.0	16	100	0	64	43	12	6	37	1.68
89921--90026	55	1.9	55	82	0	131	32	21	7	38	1.82
90216--90333	59	2.0	60	79	3	130	38	8	22	30	1.83
90209--90346	60	2.3	60	76	5	136	39	7	22	30	1.81
92455--92486	14	2.2	15	94	5	57	25	15	25	34	1.95

Tables:   1

The End!