genome.fa.s3468.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003468.1 Hibiscus syriacus cultivar Beakdansim tig00007337_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65418

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14917--15141	82	2.7	82	78	2	245	31	14	20	34	1.92
15510--15548	20	2.0	20	89	0	60	25	33	25	15	1.95
23013--23050	18	2.1	18	90	0	58	42	28	26	2	1.69
23976--24017	22	2.0	21	85	4	57	23	35	26	14	1.93
26699--26745	22	2.2	22	88	3	69	42	10	12	34	1.78
27907--27953	20	2.3	20	100	0	94	25	12	21	40	1.89
27916--28019	20	5.4	19	80	13	99	26	23	18	31	1.97
31196--31244	18	2.5	21	90	9	77	30	12	12	44	1.78
31196--31259	21	3.2	20	81	16	62	32	10	9	46	1.71
31554--31611	20	3.0	20	85	7	66	25	31	18	24	1.98
31961--32043	34	2.4	34	87	0	121	32	16	30	20	1.95
34589--34640	23	2.2	24	93	3	88	48	5	17	28	1.70
37721--37861	41	3.4	42	74	4	126	31	13	24	29	1.93
37726--37879	82	1.9	83	90	1	247	29	12	25	31	1.93
41353--41409	28	2.0	28	96	0	105	24	17	12	45	1.83
43308--43339	2	16.0	2	100	0	64	50	0	0	50	1.00
48933--48965	2	16.5	2	100	0	66	51	0	0	48	1.00
49086--49121	2	18.0	2	100	0	72	50	0	0	50	1.00
58548--58591	19	2.2	19	84	8	52	50	13	0	36	1.42
59062--59114	18	2.9	18	74	23	56	30	1	1	66	1.13
60962--61019	23	2.6	23	72	2	55	51	13	15	18	1.76
62886--62954	36	1.9	36	96	0	129	33	18	21	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63287--63330	15	2.8	16	80	16	56	18	4	2	75	1.09
63308--63360	22	2.5	20	82	11	61	16	9	1	71	1.21
64214--64270	29	2.0	30	86	6	82	28	5	19	47	1.71
64352--64392	21	2.0	21	90	9	66	19	39	17	24	1.92
64351--64421	29	2.4	30	81	9	85	23	35	16	23	1.95
64456--64502	20	2.3	20	88	0	67	19	23	25	31	1.98

Tables:   1

The End!