genome.fa.s3469.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003469.1 Hibiscus syriacus cultivar Beakdansim tig00007340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123588

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3676--3701	2	13.0	2	100	0	52	50	0	0	50	1.00
6244--6293	13	4.0	12	84	7	64	54	0	6	40	1.25
6249--6302	25	2.1	26	82	3	65	61	1	3	33	1.25
7129--7200	24	3.0	24	88	8	103	37	1	20	40	1.62
10280--10324	21	2.1	21	100	0	90	17	15	20	46	1.84
11796--11827	3	11.0	3	93	6	57	34	0	0	65	0.93
11981--12034	26	2.1	26	89	6	83	46	1	0	51	1.11
11981--12053	26	2.8	25	83	12	67	43	4	0	52	1.20
27861--27967	34	3.1	33	78	14	85	34	0	3	61	1.14
27894--27972	34	2.4	34	85	8	101	37	0	1	60	1.05
28110--28163	17	3.2	17	78	0	63	31	0	1	66	1.02
28091--28178	28	3.3	26	75	10	72	35	0	3	61	1.13
29695--29742	21	2.3	21	85	0	60	25	39	12	22	1.89
29746--29839	21	4.5	21	92	5	129	18	35	26	20	1.95
30362--30458	33	2.9	34	85	3	124	56	4	2	37	1.30
30360--30465	34	3.2	32	82	8	122	55	4	1	37	1.32
30640--31504	128	6.8	128	96	0	1579	32	19	25	22	1.98
31575--31615	8	5.2	8	82	5	57	36	29	0	34	1.58
35481--35524	23	2.0	22	86	4	61	38	11	2	47	1.52
36215--36307	28	3.3	28	96	0	168	38	17	10	33	1.84
36933--36975	22	2.0	22	85	0	59	51	23	2	23	1.60
37356--37506	60	2.5	61	80	11	145	40	3	23	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48275--48326	20	2.6	20	96	0	95	30	11	11	46	1.76
49298--49373	33	2.3	33	90	0	116	31	10	17	40	1.83
49822--50160	83	4.1	83	88	1	459	23	17	27	31	1.97
50366--50470	37	2.9	36	87	2	156	40	12	20	26	1.87
51291--51334	21	2.1	21	95	0	79	20	27	13	38	1.90
51658--51752	32	2.9	32	88	1	145	34	21	12	31	1.91
52860--52932	24	3.0	25	79	18	82	4	19	2	73	1.11
52874--52937	12	5.0	13	80	16	71	1	17	4	76	1.03
52873--52924	27	2.0	25	92	7	86	3	17	3	75	1.11
52879--52937	26	2.3	26	85	8	84	1	16	5	76	1.05
55999--56039	14	3.0	13	86	10	55	60	0	0	39	0.96
56032--56056	2	12.5	2	100	0	50	52	0	0	48	1.00
56413--56489	33	2.3	33	80	4	93	32	11	15	40	1.84
56557--56608	3	17.3	3	81	15	63	65	0	0	34	0.93
57053--57081	14	2.0	15	93	6	51	48	10	0	41	1.37
60264--60308	13	3.5	13	84	6	65	20	53	13	13	1.72
60344--60408	24	2.6	26	79	16	75	55	0	0	44	0.99
60362--60401	19	2.1	19	85	0	53	55	0	0	45	0.99
60421--60471	12	4.3	12	90	5	77	27	50	13	7	1.69
60406--60471	23	2.8	24	81	4	80	27	48	13	10	1.75
62110--62137	2	14.0	2	100	0	56	50	0	0	50	1.00
62661--62811	32	4.8	32	81	4	119	44	10	5	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68485--68535	17	2.9	17	80	8	59	49	0	1	49	1.12
68485--68527	16	2.5	17	85	7	52	48	0	2	48	1.14
77534--77578	24	1.9	24	86	4	65	33	2	4	60	1.29
82158--82197	12	3.4	11	86	13	53	37	0	2	60	1.11
82737--82774	17	2.2	17	86	9	51	55	0	2	42	1.14
82786--82814	14	2.1	14	100	0	58	55	0	6	37	1.27
83981--84009	2	14.5	2	100	0	58	51	0	0	48	1.00
88204--88236	2	16.5	2	100	0	66	48	0	0	51	1.00
89085--89164	25	3.2	26	86	10	105	56	7	5	31	1.49
92839--92873	2	17.5	2	100	0	70	48	0	0	51	1.00
93617--93768	78	1.9	78	100	0	304	44	5	14	36	1.68
95026--95056	16	1.9	16	93	0	53	77	0	3	19	0.90
96783--96850	35	2.0	34	85	2	91	41	17	7	33	1.77
97872--97909	18	2.1	18	95	0	67	39	13	10	36	1.79
99311--99339	6	5.0	6	95	4	51	34	17	48	0	1.47
105146--105202	28	2.0	28	100	0	114	31	24	17	26	1.97
113825--113907	42	2.0	42	95	0	148	43	25	6	25	1.77
114775--114842	31	2.2	31	89	0	100	41	10	7	41	1.67
120318--120367	21	2.4	21	80	3	66	42	4	6	48	1.46
120608--120644	19	1.9	19	88	0	56	37	0	5	56	1.22
121242--121290	23	2.1	23	92	0	80	24	8	14	53	1.68
121590--121647	2	29.0	2	100	0	116	50	0	0	50	1.00

Tables:   1

The End!