genome.fa.s347.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000347.1 Hibiscus syriacus cultivar Beakdansim tig00000640_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70833

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8814--8864	25	2.0	26	84	7	68	11	9	21	56	1.63
16105--16148	13	3.4	13	80	0	52	68	13	2	15	1.31
16573--16642	36	1.9	36	85	5	97	25	21	41	11	1.86
20584--20651	16	4.1	17	74	12	61	39	4	1	54	1.30
23588--23632	24	1.9	23	86	4	63	15	6	4	73	1.21
27351--28675	106	12.6	106	93	2	2023	33	25	18	23	1.97
27776--27931	43	3.4	43	66	16	116	34	23	18	23	1.96
31655--31699	24	1.9	23	86	4	63	15	6	4	73	1.21
32505--32551	16	2.9	16	75	9	51	48	0	2	48	1.13
42542--42720	21	8.7	21	81	6	215	21	21	17	39	1.93
42541--42719	41	4.4	41	93	1	297	21	21	17	39	1.93
42541--42730	20	9.3	20	80	7	204	23	21	17	37	1.94
46156--46210	19	2.8	19	83	2	65	38	21	21	18	1.94
46163--46266	19	6.1	17	71	23	76	43	19	24	13	1.86
46201--46255	14	3.6	14	73	21	56	45	20	23	10	1.82
46183--46309	33	3.8	33	94	0	218	45	18	23	12	1.83
46309--46371	19	3.3	19	91	4	83	12	14	25	47	1.79
46510--46546	14	2.6	14	91	0	65	45	21	0	32	1.52
47894--47959	21	3.2	21	69	2	62	19	19	36	24	1.95
47894--48015	42	2.9	41	80	6	120	22	18	36	22	1.95
48412--48533	19	6.8	19	71	20	84	46	23	19	9	1.80
48436--48530	33	2.8	33	91	1	145	46	25	20	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48592--48648	19	2.9	19	87	5	78	10	22	17	49	1.77
48737--49014	94	3.1	93	86	7	385	47	17	12	22	1.81
49795--49837	21	2.0	22	82	13	54	48	0	4	46	1.22
50681--50718	20	1.9	20	88	0	58	42	21	23	13	1.88
50710--50763	14	3.5	14	73	22	54	46	22	22	9	1.80
50689--50763	33	2.2	34	90	2	116	44	22	22	10	1.84
50794--50848	20	2.8	20	88	2	85	14	21	21	41	1.89
51393--51505	21	5.4	21	85	6	149	20	21	14	44	1.86
51475--51539	34	1.9	34	90	0	103	21	20	15	43	1.88
51540--51606	21	3.2	21	89	0	98	37	17	26	17	1.93
52547--52581	17	2.1	18	89	10	56	42	0	0	57	0.99
53807--53846	20	2.0	20	100	0	80	20	5	15	60	1.53
61833--61878	12	3.8	12	91	0	74	17	10	21	50	1.77
61835--61887	24	2.2	24	82	0	61	18	15	18	47	1.83
62133--62227	36	2.7	36	78	1	93	42	15	11	30	1.83

Tables:   1

The End!