genome.fa.s3470.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003470.1 Hibiscus syriacus cultivar Beakdansim tig00007341_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87039

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2647--2698	23	2.2	24	96	3	97	28	23	13	34	1.92
3889--3966	31	2.5	31	78	0	93	35	21	23	19	1.96
4493--4522	2	15.0	2	100	0	60	50	0	0	50	1.00
5408--5456	22	2.3	20	86	6	71	65	4	12	18	1.41
5425--5471	18	2.6	18	83	10	51	68	6	14	10	1.38
15750--15776	2	13.5	2	100	0	54	51	0	0	48	1.00
15998--16181	59	3.1	59	80	3	192	32	22	5	39	1.78
16029--16123	29	3.2	29	67	19	79	32	18	4	44	1.69
17868--17984	60	2.0	60	96	0	216	35	22	14	28	1.93
22616--22666	22	2.4	22	83	3	59	43	5	3	47	1.46
26237--26350	60	1.9	60	83	0	147	43	12	9	34	1.75
31492--31683	21	9.2	20	65	19	81	22	20	25	31	1.98
31492--31708	42	5.2	42	93	1	357	23	20	24	32	1.98
32482--32508	6	4.5	6	100	0	54	0	14	51	33	1.43
32598--32852	41	6.2	41	91	0	393	31	25	20	22	1.98
32643--32752	20	5.4	20	66	20	75	32	24	20	21	1.98
32662--32774	21	5.5	21	68	19	85	30	29	20	20	1.97
33293--33321	13	2.2	13	100	0	58	31	0	0	68	0.89
34536--34672	60	2.3	60	81	7	154	34	18	16	31	1.93
40979--41008	2	15.0	2	100	0	60	50	0	0	50	1.00
48978--49007	15	2.0	15	93	0	51	50	0	0	50	1.00
56067--56260	20	9.6	20	76	8	76	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56067--56260	40	4.8	39	82	3	199	35	25	19	19	1.95
56067--56260	60	3.2	60	82	0	244	35	25	19	19	1.95
56640--56710	33	2.2	33	92	0	115	11	22	18	47	1.80
56831--56885	14	3.6	14	73	21	56	41	23	25	9	1.83
56831--56901	33	2.2	33	94	0	124	43	25	22	8	1.81
56897--56994	19	5.7	19	70	22	81	10	24	22	42	1.84
56919--57008	14	5.7	14	74	23	81	8	25	23	42	1.83
56902--57016	33	3.5	33	95	0	212	9	24	20	45	1.81
58713--59091	92	4.1	93	98	0	735	22	12	18	46	1.83
58713--59093	185	2.1	185	97	1	737	22	12	18	46	1.82
59135--59263	19	7.3	19	75	17	125	45	28	17	8	1.77
59171--59263	33	2.8	32	91	4	150	46	27	18	7	1.76
59135--59263	52	2.5	52	74	14	140	45	28	17	8	1.77
59259--59393	19	7.6	19	75	16	128	11	19	23	45	1.82
59281--59337	14	3.7	14	77	20	60	10	21	22	45	1.82
59264--59356	33	2.8	33	95	0	168	10	20	21	47	1.80
59846--59906	21	3.0	20	73	7	59	24	36	19	19	1.95
61289--61323	13	2.6	14	90	4	54	31	0	22	45	1.53
61430--61512	19	4.6	19	78	17	104	44	18	22	14	1.86
61462--61512	20	2.6	20	96	3	95	43	17	23	15	1.88
61541--61814	19	15.4	19	81	15	354	13	21	17	46	1.83
61519--61786	52	5.0	52	93	4	455	14	22	16	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61519--61786	109	2.5	105	91	6	459	14	22	16	46	1.83
64097--64121	12	2.1	12	100	0	50	0	28	0	72	0.86
64296--64342	24	2.0	24	87	8	69	38	21	14	25	1.92
65018--65407	20	19.5	20	84	5	457	20	18	25	35	1.95
67573--67617	23	2.0	23	86	0	63	20	26	26	26	1.99
72144--72186	16	2.9	15	82	6	52	41	18	0	39	1.51
77313--77509	103	1.9	103	97	0	376	36	17	24	21	1.95

Tables:   1

The End!