Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003471.1 Hibiscus syriacus cultivar Beakdansim tig00007342_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93915

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
369--428
30
1.9
32
83
6
79
50
5
8
36
1.55
549--617
36
1.9
36
85
11
97
40
5
13
40
1.68
831--864
2
17.0
2
100
0
68
50
0
0
50
1.00
985--1035
2
27.0
2
81
18
65
47
1
0
50
1.12
985--1035
23
2.3
22
90
10
77
47
1
0
50
1.12
1294--1337
23
1.9
23
86
9
63
61
4
0
34
1.16
1662--1686
2
12.5
2
100
0
50
48
0
52
0
1.00
8635--8705
32
2.2
32
87
0
106
19
8
22
49
1.75
11742--11814
6
12.5
6
94
5
132
34
0
15
50
1.44
12960--13005
15
3.3
15
79
14
53
23
0
21
54
1.45
23353--23429
37
2.1
37
85
4
102
48
1
3
46
1.28
24049--24083
2
18.0
2
94
5
63
51
0
48
0
1.00
25177--25217
20
2.0
21
85
4
57
58
2
2
36
1.24
26120--26158
18
2.2
18
86
9
53
2
25
12
58
1.47
26599--26700
3
33.7
3
96
2
186
64
0
0
34
1.00
27018--27701
117
5.9
115
87
5
972
31
19
12
35
1.90
27018--27701
230
3.0
230
93
2
1115
31
19
12
35
1.90
28435--28644
84
2.5
83
93
0
357
37
21
14
26
1.92
29413--29457
18
2.6
17
89
6
65
55
6
6
31
1.52
29786--29815
7
4.4
7
91
8
53
0
13
0
86
0.57
29786--29815
13
2.2
14
94
5
53
0
13
0
86
0.57
42011--42082
19
3.6
18
73
23
63
1
19
8
70
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42515--42603
3
29.7
3
91
0
133
60
0
3
35
1.13
43914--43947
16
2.1
16
88
5
50
11
0
14
73
1.10
50048--50112
2
32.5
2
96
0
121
50
1
0
47
1.10
55045--55359
162
1.9
162
85
0
432
31
20
20
27
1.98
58546--58665
48
2.5
48
98
1
231
41
15
4
38
1.67
64165--64248
12
7.2
12
70
20
63
76
0
15
8
1.01
64172--64300
23
5.7
22
78
13
111
75
0
17
7
1.03
64157--64309
45
3.3
47
83
9
165
75
0
16
8
1.04
64157--64307
7
20.9
7
71
20
73
74
0
16
8
1.05
64158--64301
8
18.5
8
72
21
103
75
0
16
8
1.04
64229--64316
23
3.8
23
82
10
108
77
0
15
6
0.97
64177--64307
37
3.5
36
76
20
110
76
0
16
7
1.00
64184--64317
16
8.7
15
75
18
109
76
0
16
7
1.01
64319--64403
45
1.9
44
82
2
107
37
17
29
15
1.91
65676--66221
55
10.0
55
87
3
687
28
16
24
30
1.96
67876--67942
22
3.0
22
100
0
134
26
26
26
19
1.99
68162--68221
30
2.0
31
90
3
95
33
23
6
36
1.81
68236--68306
29
2.5
28
93
2
115
38
12
9
39
1.77
68610--68766
71
2.2
71
89
1
235
17
30
26
26
1.97
68746--68788
21
2.0
21
86
0
59
16
25
27
30
1.97
74807--74873
22
3.0
22
100
0
134
26
26
26
19
1.99
75093--75152
30
2.0
31
90
3
95
33
23
6
36
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75167--75237
29
2.5
28
93
2
115
38
12
9
39
1.77
75541--75692
69
2.2
69
88
2
218
17
28
26
26
1.98
75672--75714
21
2.0
21
86
0
59
16
25
27
30
1.97
78740--78839
39
2.6
39
85
0
128
22
26
23
29
1.99
78766--78889
39
3.2
39
81
5
135
22
22
24
30
1.99
83758--83846
20
4.0
23
73
19
82
57
0
0
42
0.98
83780--83844
2
36.5
2
74
22
56
55
0
0
44
0.99
83771--83851
44
1.9
40
87
9
117
59
0
0
40
0.98
83757--83851
12
8.2
13
71
20
77
56
0
0
43
0.99
86657--86696
2
20.0
2
100
0
80
50
0
0
50
1.00
90898--90985
37
2.4
38
84
5
126
11
11
37
39
1.77
91150--91204
28
2.0
28
92
3
94
16
7
34
41
1.76
90725--91270
253
2.2
240
87
6
745
25
11
26
36
1.90

Tables:   1

The End!