Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003473.1 Hibiscus syriacus cultivar Beakdansim tig00007344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111669

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2885--2909
6
4.2
6
100
0
50
68
0
0
32
0.90
2864--2912
20
2.4
22
76
16
59
57
0
0
42
0.99
3312--3384
35
2.1
35
89
0
110
39
24
1
34
1.64
4334--4396
28
2.3
27
81
8
72
47
0
3
49
1.17
4468--4504
15
2.4
16
86
13
51
59
5
2
32
1.34
5159--5188
14
2.1
15
93
6
53
33
0
0
66
0.92
5164--5205
14
2.8
15
82
7
50
30
4
0
64
1.14
5783--5850
30
2.2
32
75
19
74
61
10
1
26
1.36
5948--5974
3
9.0
3
100
0
54
33
0
0
66
0.92
8126--8263
49
2.8
49
95
0
240
25
17
36
20
1.94
13113--13146
16
2.1
16
100
0
68
35
5
17
41
1.74
14371--14408
2
19.5
2
89
5
60
52
2
0
44
1.14
14370--14402
17
1.9
17
100
0
66
54
0
0
45
0.99
15701--16973
106
12.0
106
91
0
1942
22
17
24
34
1.96
15701--16973
211
6.0
212
90
1
1946
22
17
24
34
1.96
15701--16973
317
4.0
318
91
1
1957
22
17
24
34
1.96
18547--18609
19
3.6
17
79
18
67
1
12
6
79
0.99
18557--18609
16
3.3
15
79
12
52
0
13
5
81
0.86
18558--18607
11
4.3
12
80
17
52
0
14
6
80
0.90
23006--23115
18
5.9
18
68
23
52
62
0
3
32
1.18
22992--23045
22
2.5
22
80
14
58
64
0
3
31
1.11
23173--23201
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23753--23837
37
2.3
37
85
0
107
31
10
15
42
1.81
24393--24601
60
3.5
60
85
5
210
33
19
4
42
1.72
24443--24538
31
3.2
31
65
11
90
34
22
4
38
1.74
24443--24607
60
2.8
60
90
1
242
33
20
6
40
1.77
36534--36594
31
1.9
31
83
9
79
50
6
16
26
1.69
36819--36852
16
2.1
16
94
0
59
23
2
11
61
1.43
42875--42923
20
2.3
21
86
6
64
36
0
6
57
1.24
52761--52865
48
2.1
50
89
7
160
28
19
18
34
1.95
57083--57281
97
2.1
97
98
0
380
40
14
21
23
1.90
74365--74497
61
2.2
61
95
0
248
28
24
3
43
1.71
75507--75575
19
3.6
19
96
0
129
30
15
30
23
1.96
75519--75620
19
4.9
23
80
14
75
31
16
27
24
1.96
76467--76537
31
2.3
31
88
9
101
36
7
15
40
1.74
77089--77159
31
2.3
31
88
9
101
36
7
15
40
1.74
77230--77279
19
2.6
19
100
0
100
38
14
16
32
1.88
77385--77425
21
2.0
21
90
4
66
24
21
26
26
2.00
77454--77493
20
1.9
21
85
10
55
37
37
10
15
1.80
79370--79412
21
2.0
21
90
0
68
32
27
23
16
1.96
79959--80276
103
3.1
103
94
1
575
26
12
24
36
1.91
80296--80358
23
2.7
23
85
4
83
20
25
26
26
1.99
81032--81081
23
2.2
23
85
0
64
20
26
26
28
1.99
88917--88968
24
2.1
26
79
13
65
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88920--88980
21
2.8
21
82
9
61
62
0
1
36
1.05
90136--90190
27
2.0
27
89
3
83
69
3
3
23
1.21
91428--91471
21
2.0
22
82
4
54
25
2
2
70
1.10
91432--91489
10
5.6
10
78
8
53
24
3
3
68
1.20
93249--93291
21
2.0
21
81
0
50
30
30
25
13
1.94
93856--93883
2
14.0
2
100
0
56
50
0
0
50
1.00
95430--95474
21
2.1
21
87
0
63
35
28
20
15
1.93
96653--96870
103
2.1
103
96
0
400
26
13
23
36
1.92
96886--96992
23
4.7
23
91
0
169
21
25
26
27
1.99

Tables:   1

The End!