Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003474.1 Hibiscus syriacus cultivar Beakdansim tig00007347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114989

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2816--2890
31
2.4
31
86
0
96
37
16
18
28
1.92
16216--16259
21
2.1
21
91
0
70
11
36
4
47
1.60
16251--16410
58
2.7
59
83
2
207
26
26
16
30
1.97
21470--21511
15
3.0
14
86
6
50
64
0
2
33
1.07
25836--25880
21
2.1
21
87
0
63
31
28
24
15
1.96
27066--27193
31
4.1
31
77
9
134
26
18
21
33
1.96
27179--27337
30
5.3
30
93
0
257
22
22
25
29
1.99
27610--27645
2
18.0
2
94
0
63
47
0
2
50
1.15
30465--30509
21
2.1
21
83
0
54
31
31
24
13
1.93
31673--31800
31
4.1
31
74
5
105
27
17
21
34
1.95
31786--31944
30
5.3
30
93
0
257
22
22
23
31
1.98
32217--32250
2
17.0
2
93
0
59
47
0
2
50
1.16
33362--33512
75
2.0
75
90
0
239
29
29
17
22
1.97
42228--42278
4
12.8
4
79
8
59
47
21
5
25
1.73
42740--42769
8
3.8
8
95
0
51
40
6
13
40
1.71
42761--42785
12
2.1
12
100
0
50
32
8
16
44
1.76
56767--56791
13
1.9
13
100
0
50
56
8
28
8
1.57
62971--63109
69
2.0
69
97
0
260
35
12
17
34
1.87
65478--65503
2
13.0
2
100
0
52
50
0
0
50
1.00
70063--70103
20
2.0
20
100
0
82
24
19
14
41
1.89
70823--70992
56
3.0
56
87
0
232
27
17
14
41
1.88
71304--71341
20
1.9
20
100
0
76
42
10
23
23
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71499--71571
37
1.9
39
86
10
107
43
2
0
53
1.15
71510--71585
37
2.1
37
80
9
84
48
2
2
46
1.30
81034--81070
20
1.9
19
89
10
58
21
24
10
43
1.84
82558--82597
18
2.2
19
86
4
55
55
2
0
42
1.13
83560--83720
66
2.5
65
84
4
191
30
17
22
29
1.97
89782--89881
49
2.0
49
88
0
146
28
11
12
49
1.74
92052--92087
18
2.1
18
89
5
56
33
5
0
61
1.19
102568--102707
60
2.3
60
85
7
187
40
5
20
33
1.76

Tables:   1

The End!