Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003475.1 Hibiscus syriacus cultivar Beakdansim tig00007348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74149

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7517--7550
16
2.1
16
88
0
50
29
11
26
32
1.92
13399--13427
6
4.8
6
100
0
58
17
34
13
34
1.89
18374--18537
7
23.4
7
79
4
134
21
1
32
45
1.60
18571--18617
14
3.4
14
74
11
51
21
0
31
46
1.51
20532--20656
12
10.8
12
76
5
114
32
25
19
23
1.98
20526--20656
23
5.7
23
82
3
129
31
25
19
23
1.98
20526--20622
35
2.8
35
90
0
158
30
25
19
23
1.98
20591--20659
11
6.1
11
75
6
66
31
21
21
24
1.98
20549--20659
58
1.9
58
88
1
170
30
24
20
24
1.99
25896--25925
3
10.3
3
92
7
53
70
30
0
0
0.88
26371--26475
37
2.8
37
82
0
129
40
15
13
31
1.85
27025--27181
78
2.0
78
81
12
187
25
8
2
63
1.35
27091--27143
22
2.3
23
78
18
58
28
5
0
66
1.15
27161--27257
4
22.8
4
78
19
67
20
1
3
75
1.00
27087--27181
37
2.6
36
73
18
88
25
7
1
66
1.24
27161--27264
5
22.0
5
80
14
82
20
0
2
75
0.98
28341--28368
5
5.6
5
100
0
56
17
0
0
82
0.68
29752--29790
8
5.0
8
84
6
53
10
17
10
61
1.55
29752--29790
15
2.5
16
83
8
53
10
17
10
61
1.55
30918--30981
10
6.9
9
72
24
53
81
4
14
0
0.85
30932--31009
7
11.0
7
77
15
63
80
5
12
1
0.93
30923--31008
20
4.8
16
74
20
64
81
4
12
1
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30930--30993
25
2.6
25
80
11
71
82
4
12
0
0.81
30923--30985
17
3.6
17
76
21
67
82
3
14
0
0.79
30934--30993
17
3.2
19
81
18
81
81
5
13
0
0.84
30934--31005
20
3.8
18
80
19
76
80
5
12
1
0.94
30920--31008
37
2.4
37
85
14
130
80
5
12
1
0.93
31639--31693
22
2.5
22
96
0
101
36
29
12
21
1.91
32604--33556
106
9.0
106
93
0
1476
34
25
18
22
1.96
33754--33916
83
2.0
83
88
0
245
30
25
20
23
1.99
34389--34493
37
2.8
37
83
0
129
40
15
12
32
1.84
35174--35266
4
21.8
4
77
20
59
20
1
3
75
1.01
35100--35191
37
2.5
36
73
18
82
25
7
1
66
1.25
35190--35273
5
17.8
5
80
11
81
19
1
3
76
1.00
39371--39668
147
2.0
147
94
0
524
29
12
13
43
1.81
47096--47240
56
2.6
56
85
3
177
35
11
8
44
1.71
48401--48433
14
2.4
14
95
5
59
27
0
30
42
1.56
54195--54236
20
2.1
20
86
0
57
76
2
21
0
0.90
63213--63254
17
2.5
17
81
14
52
42
0
0
57
0.99
63213--63266
16
3.3
17
79
7
58
42
0
0
57
0.98
69939--69998
21
2.9
21
80
7
68
18
1
33
46
1.59
71652--71702
25
2.0
25
96
0
93
19
35
15
29
1.93

Tables:   1

The End!