Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003476.1 Hibiscus syriacus cultivar Beakdansim tig00007349_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95856

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3872--3919
17
2.8
16
79
17
51
31
0
4
64
1.12
3874--3912
18
2.1
18
90
4
60
28
0
2
69
1.02
4204--4241
2
19.0
2
100
0
76
50
0
0
50
1.00
4364--4397
2
17.0
2
100
0
68
50
0
0
50
1.00
4808--4869
31
2.0
32
83
3
81
35
8
4
51
1.53
5374--5433
29
2.1
29
90
3
95
36
11
10
41
1.75
8184--8217
14
2.2
16
90
10
54
20
5
2
70
1.21
10758--10812
28
2.0
29
85
7
78
25
1
10
61
1.39
12392--12431
14
2.9
14
84
0
53
7
15
20
57
1.61
27825--27902
31
2.5
31
87
2
113
30
14
12
42
1.83
28952--29028
37
2.1
37
85
4
102
48
1
3
46
1.28
30109--30144
4
9.0
4
93
0
63
47
0
2
50
1.15
33381--33468
38
2.4
37
80
12
108
39
3
3
53
1.34
38576--39064
4
122.2
4
100
0
978
24
0
24
50
1.50
41932--42045
29
3.9
29
100
0
228
16
35
28
20
1.94
42085--42140
29
1.9
29
92
7
96
12
35
30
21
1.90
43911--43986
35
2.2
35
90
0
116
38
25
1
35
1.64
44383--44630
130
1.9
130
92
0
415
36
15
12
35
1.85
44557--44603
23
2.1
21
84
7
58
36
14
14
34
1.88
44397--44661
130
2.0
129
81
4
300
40
13
12
33
1.83
44958--45020
28
2.3
27
81
8
72
44
1
3
50
1.27
45100--45133
16
2.0
18
88
11
54
64
5
2
26
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45717--45916
87
2.3
86
84
3
251
43
16
8
32
1.77
56301--56337
2
18.5
2
94
0
56
45
0
5
48
1.25
71833--71870
14
2.7
14
84
8
51
44
0
0
55
0.99
71844--71911
23
3.0
23
78
4
66
45
1
1
51
1.19
74982--75010
15
1.9
15
100
0
58
72
0
6
20
1.07
79603--79692
2
45.0
2
100
0
180
50
0
0
50
1.00
80244--80311
33
2.1
33
88
5
102
41
13
19
26
1.88
80338--80521
36
5.3
36
75
13
179
38
11
19
29
1.88
80221--80522
101
3.0
102
81
7
332
41
10
18
29
1.84
80893--81474
217
2.7
217
89
2
864
22
18
24
34
1.96
80893--81483
106
5.5
106
83
6
720
22
18
25
33
1.96
82798--82977
96
1.9
95
90
1
288
28
19
19
32
1.96
87428--87511
45
1.9
43
90
4
132
30
26
13
29
1.93
88081--88124
2
23.0
2
86
9
65
50
0
2
47
1.13
88964--89030
33
2.0
33
91
0
107
44
14
7
32
1.74
89026--89066
21
2.0
21
100
0
82
48
7
14
29
1.71
91108--91382
141
2.0
137
93
5
473
29
20
12
38
1.89
92081--92189
35
3.0
36
90
5
166
44
20
5
30
1.74
92121--92181
21
3.2
21
63
29
55
40
21
6
31
1.78
95428--95459
15
2.1
15
94
0
55
9
25
12
53
1.68

Tables:   1

The End!