genome.fa.s3478.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003478.1 Hibiscus syriacus cultivar Beakdansim tig00007352_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67543

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3177--3205	14	2.1	14	100	0	58	34	0	0	65	0.93
3676--3832	21	7.8	20	70	9	77	37	24	17	19	1.94
3800--4190	20	19.5	20	82	6	441	35	25	18	20	1.95
4861--4907	24	2.0	24	87	8	69	25	14	21	38	1.92
7372--7626	19	14.4	19	80	16	316	46	18	21	14	1.83
7422--7479	14	3.8	14	73	20	53	46	18	22	12	1.82
7372--7626	33	7.2	34	87	9	304	46	18	21	14	1.83
7472--7567	13	7.6	13	65	18	51	46	15	21	15	1.83
7439--7648	52	3.9	52	91	6	348	46	17	21	15	1.84
7655--7737	20	4.6	19	81	15	113	14	24	18	43	1.87
7844--7879	14	2.6	14	86	4	56	47	22	0	30	1.52
9828--9884	14	3.7	14	77	20	60	45	22	21	10	1.82
9809--9901	33	2.8	33	95	0	168	47	21	20	10	1.80
9772--9906	19	7.6	19	76	16	128	45	23	19	11	1.82
9902--10028	19	7.2	19	74	17	121	7	17	28	46	1.76
9902--9993	33	2.8	33	93	3	150	7	18	28	45	1.76
10074--10727	92	7.1	92	98	1	1258	46	18	12	22	1.83
10074--10727	185	3.5	184	98	1	1258	46	18	12	22	1.83
12432--12521	14	5.7	14	74	23	81	42	23	25	8	1.83
12424--12538	33	3.5	33	95	0	212	45	20	24	9	1.81
12431--12543	19	6.8	18	72	23	88	43	22	24	9	1.83
12555--12609	14	3.6	14	73	21	56	9	25	23	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12539--12609	33	2.2	33	94	0	124	8	22	25	43	1.81
12550--12631	33	2.5	33	89	2	119	9	25	21	42	1.84
12562--12650	20	4.8	20	72	19	75	12	24	19	43	1.85
12730--12800	33	2.2	33	92	0	115	47	16	22	12	1.80
12982--13036	22	2.5	22	81	0	74	20	16	40	23	1.91
13182--13374	20	9.6	20	82	5	219	19	19	25	35	1.95
13182--13374	60	3.2	60	83	0	251	19	19	25	35	1.95
15145--15179	17	1.9	17	88	11	52	62	0	5	31	1.18
15849--15916	21	3.2	20	81	6	73	30	27	14	26	1.95
15930--16090	77	2.1	77	90	2	252	30	16	16	36	1.91
16050--16138	20	4.4	20	86	0	133	28	15	16	39	1.90
17578--17694	60	2.0	59	86	5	164	35	22	5	36	1.79
17578--17735	60	2.7	60	81	8	155	32	22	7	37	1.82
19748--19791	21	2.1	21	100	0	88	43	0	18	38	1.50
24294--24602	124	2.5	121	82	5	352	45	7	13	32	1.72
26122--26158	14	2.6	14	91	8	58	59	0	2	37	1.12
26159--26194	10	3.5	10	88	7	54	33	2	0	63	1.08
26160--26194	11	3.3	11	92	4	54	31	2	0	65	1.07
31449--31509	10	6.1	10	94	0	95	63	0	4	31	1.15
31449--31509	30	2.0	30	96	0	113	63	0	4	31	1.15
40564--40606	2	21.5	2	100	0	86	48	0	0	51	1.00
42905--42952	2	24.0	2	100	0	96	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44017--44044	2	14.0	2	100	0	56	50	0	0	50	1.00
44827--44872	22	2.0	23	83	4	58	39	2	0	58	1.10
48009--48159	60	2.5	60	90	2	232	31	17	19	31	1.95
48009--48193	60	3.1	57	84	6	217	31	17	18	31	1.94
48682--48753	31	2.3	31	83	4	83	27	16	9	45	1.79

Tables:   1

The End!