Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003479.1 Hibiscus syriacus cultivar Beakdansim tig00007353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77526

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5899--5964
30
2.2
30
91
0
105
30
12
9
48
1.71
8302--8349
23
2.1
23
96
0
87
58
0
0
41
0.98
8917--8942
2
13.0
2
100
0
52
50
0
0
50
1.00
9330--9471
61
2.3
61
82
2
178
40
7
5
45
1.56
9357--9574
109
2.0
108
82
2
267
35
8
9
46
1.67
9466--9683
61
3.6
60
83
5
244
32
11
12
43
1.80
12398--12452
20
2.8
20
91
0
92
27
34
27
10
1.90
12405--12442
10
3.8
10
83
13
51
28
34
26
10
1.90
12534--12602
29
2.3
30
87
5
113
15
34
30
18
1.93
12604--12692
33
2.7
33
89
0
124
10
35
26
26
1.88
14684--14731
20
2.4
19
76
10
51
39
25
12
22
1.89
14763--14821
22
2.7
22
92
7
95
28
30
10
30
1.90
14795--15036
120
2.0
118
88
1
358
38
18
16
27
1.92
17299--17347
25
2.0
25
100
0
98
36
18
12
32
1.88
18161--18232
20
3.6
20
94
0
117
48
6
20
23
1.74
23124--23488
22
16.6
22
90
2
563
48
10
0
40
1.40
25974--25999
2
13.0
2
100
0
52
50
0
0
50
1.00
30162--30204
18
2.4
18
80
3
52
53
0
4
41
1.21
30970--31010
2
20.5
2
100
0
82
51
0
0
48
1.00
31168--31509
190
1.8
189
94
0
612
46
10
11
31
1.74
31543--31589
22
2.1
23
84
4
60
51
6
10
31
1.62
32297--32338
2
21.0
2
100
0
84
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33172--33225
5
10.8
5
93
0
72
5
40
37
16
1.72
33227--33295
6
11.5
6
98
0
120
2
15
50
30
1.59
38524--38567
5
8.8
5
92
0
52
6
40
36
15
1.74
38565--38619
18
3.1
18
91
0
83
9
16
49
25
1.75
38565--38615
6
8.5
6
97
0
75
9
17
49
23
1.77
38894--38948
22
2.5
22
75
0
56
29
9
23
38
1.85
48103--48365
43
6.1
43
81
4
271
35
20
21
22
1.96
48147--48365
85
2.6
85
84
6
284
34
21
21
22
1.97
50858--51125
142
1.9
142
82
4
335
37
19
11
32
1.87
51858--52215
41
8.6
41
81
4
371
33
18
19
28
1.95
51858--52179
125
2.6
123
82
5
380
34
17
19
28
1.95
51858--52216
166
2.2
165
88
3
517
33
18
19
28
1.95
51899--52259
82
4.4
81
75
10
250
32
18
19
29
1.95
53307--53351
20
2.1
22
84
8
58
35
6
4
53
1.47
56768--56828
21
3.2
21
65
29
64
31
4
21
42
1.74
56760--56868
35
3.0
36
93
5
184
29
5
20
44
1.73
58067--58098
15
2.1
15
94
0
55
53
12
25
9
1.68
61402--61462
21
3.2
20
65
29
53
31
6
21
40
1.78
61395--61502
35
3.0
36
90
5
164
30
4
20
44
1.72
64405--64445
21
2.0
21
100
0
82
29
14
7
48
1.71
64435--64507
33
2.2
33
87
2
112
32
8
13
45
1.73
65350--65403
2
27.0
2
92
0
90
48
1
0
50
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65953--66036
45
1.9
43
90
4
132
29
13
26
30
1.93
66521--66575
28
2.0
28
81
0
65
21
7
1
69
1.23
71942--72512
211
2.7
214
85
4
780
33
25
18
22
1.97
71942--72512
110
5.4
108
79
11
610
33
25
18
22
1.97
72882--72961
36
2.2
36
97
2
153
23
22
13
40
1.90
72990--73063
36
2.1
36
89
0
112
29
18
10
40
1.85
73090--73157
33
2.1
33
88
5
102
26
19
13
41
1.88
73703--73799
2
48.5
2
97
0
185
49
0
0
50
1.00

Tables:   1

The End!