Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000348.1 Hibiscus syriacus cultivar Beakdansim tig00000641_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72403

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9511--9561
21
2.4
21
93
6
86
58
11
3
25
1.50
9526--9572
21
2.2
21
84
0
58
63
12
8
14
1.50
11752--11866
60
1.9
60
81
10
137
33
14
15
36
1.89
20597--20669
36
2.0
37
84
5
96
52
1
0
46
1.09
23092--23136
14
3.5
14
71
22
53
13
11
20
55
1.68
23056--23136
38
2.1
38
86
0
108
13
12
18
55
1.69
23090--23137
24
2.0
24
100
0
96
12
12
20
54
1.70
29300--29326
14
1.9
14
100
0
54
55
0
37
7
1.28
29504--29538
17
1.9
19
88
11
56
31
8
34
25
1.86
36415--36453
10
3.9
10
86
0
60
17
12
10
58
1.61
36415--36452
20
1.9
20
94
0
67
18
13
10
57
1.63
36452--36512
24
2.6
23
84
5
77
11
14
18
55
1.68
36434--36522
23
3.8
23
80
2
97
12
13
16
57
1.66
36415--36544
57
2.3
57
80
7
140
13
14
16
56
1.68
36419--36522
10
9.4
10
71
17
64
12
13
16
57
1.65
36468--36561
24
4.0
24
78
2
91
11
12
18
57
1.65
37196--37270
30
2.5
30
93
2
123
28
28
12
32
1.92
55517--55544
14
2.0
14
100
0
56
21
42
28
7
1.79
55514--55597
24
3.8
22
83
12
100
23
35
29
10
1.89
55513--55608
43
2.2
43
86
1
129
23
34
32
9
1.87
55511--55633
10
11.3
10
69
16
75
24
30
35
9
1.88
55559--55645
33
2.6
34
84
10
110
27
25
37
9
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55649--55704
29
1.9
29
92
0
94
21
30
35
12
1.90
55733--55757
12
2.1
12
100
0
50
16
36
8
40
1.77
55775--55831
29
2.0
29
89
0
87
19
29
35
15
1.93
67379--67420
22
1.9
22
85
9
59
42
11
14
30
1.81

Tables:   1

The End!