genome.fa.s3482.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003482.1 Hibiscus syriacus cultivar Beakdansim tig00007356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89927

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85--134	22	2.4	22	93	6	86	70	0	0	30	0.88
4084--4116	17	2.1	17	88	11	52	48	0	3	48	1.17
12613--12652	21	1.9	21	94	0	71	32	12	5	50	1.62
12643--12719	33	2.4	32	82	8	102	31	9	14	45	1.76
12907--12938	16	2.0	17	88	11	50	43	15	21	18	1.87
13134--13432	120	2.5	122	83	3	372	49	7	13	29	1.69
16576--16634	31	1.9	31	89	0	91	33	10	16	38	1.83
18316--18405	2	51.0	2	72	24	60	56	0	0	43	0.99
18328--18401	10	7.6	9	79	13	67	58	0	0	41	0.98
18316--18403	40	2.2	40	100	0	176	56	0	0	43	0.99
19513--19558	24	1.9	23	83	16	58	47	2	0	50	1.13
19560--19609	21	2.3	23	86	10	70	46	2	0	52	1.12
19543--19605	24	2.6	24	76	23	62	50	1	0	47	1.10
32814--32861	20	2.4	20	100	0	96	43	10	20	25	1.83
36382--36567	43	4.3	43	79	6	178	34	14	18	32	1.91
42687--42743	24	2.4	24	82	5	71	15	14	12	57	1.65
44428--44469	23	2.0	21	86	13	59	28	2	21	47	1.63
44988--45050	33	1.9	33	81	18	78	44	1	4	49	1.33
45153--45195	22	2.0	22	90	0	68	23	41	16	18	1.89
45444--45502	20	3.0	20	87	0	73	15	18	22	44	1.87
45639--45693	25	2.2	24	78	15	58	20	9	18	52	1.71
46723--46759	16	2.3	16	100	0	74	29	35	27	8	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46834--46880	18	2.6	18	93	0	85	27	46	10	14	1.78
47413--47478	20	3.3	20	80	2	71	39	24	21	15	1.91
47452--47534	19	4.6	19	75	14	95	46	20	18	14	1.83
47546--47604	14	3.9	14	76	20	64	10	16	23	49	1.77
47541--47620	33	2.4	33	97	0	151	11	18	22	47	1.80
47562--47640	19	4.4	19	75	16	78	15	21	20	43	1.88
47604--47679	20	3.8	20	87	1	100	17	23	22	36	1.94
47650--47705	20	2.8	20	88	0	76	23	16	28	32	1.96
47606--47699	40	2.4	40	82	5	102	19	20	24	36	1.95
48054--48121	21	3.3	20	73	6	64	25	41	14	19	1.89
48044--48134	41	2.2	42	86	2	130	21	41	14	21	1.89
49717--49784	19	3.8	19	83	14	92	47	16	22	14	1.82
49800--49858	20	3.0	20	97	0	109	15	25	23	35	1.94
50081--50237	20	7.8	20	94	0	233	27	19	27	25	1.99
50475--50508	12	2.9	12	86	4	52	17	41	5	35	1.74
53633--53748	14	7.0	17	67	25	79	48	18	21	12	1.80
53624--53748	33	3.8	33	94	2	207	47	18	21	12	1.82
53633--53754	19	7.2	18	69	23	88	48	18	22	11	1.79
53750--53826	19	4.3	19	78	18	85	12	16	24	45	1.83
53765--53858	33	2.8	33	91	3	145	11	20	22	45	1.83
53760--53858	19	5.7	18	73	22	72	11	20	22	46	1.81
53967--54001	14	2.5	14	85	0	52	48	20	0	31	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55344--55408	21	3.2	20	70	10	60	20	18	40	21	1.92
55348--55470	42	2.9	41	79	7	113	22	18	36	21	1.95
55688--55872	91	2.0	93	90	6	297	47	18	11	22	1.80
57563--57703	33	3.9	38	80	15	140	44	19	22	12	1.85
57571--57708	52	2.6	52	87	2	195	42	21	23	13	1.87
57563--57708	19	8.1	19	72	17	123	43	19	23	13	1.86
57704--57775	33	2.2	33	92	0	117	9	20	25	44	1.82
57715--57784	33	2.1	33	89	5	106	11	21	21	45	1.83
58322--58433	20	5.6	20	81	4	73	22	20	19	37	1.94
58340--58429	41	2.2	40	86	2	117	21	21	16	41	1.91
58401--58571	41	4.2	40	73	7	146	30	18	20	29	1.97
58430--58485	20	2.7	21	80	5	69	42	16	21	19	1.89
58423--58495	21	3.5	21	79	3	76	36	17	21	23	1.94
58505--58556	20	2.5	21	87	3	70	21	23	17	38	1.93
58546--58598	21	2.5	22	81	6	74	33	18	26	20	1.96
59062--59124	33	1.9	33	81	18	78	44	1	4	49	1.33
59190--59215	2	13.0	2	100	0	52	50	0	0	50	1.00
59434--59526	39	2.4	39	90	1	143	32	15	17	35	1.91
65622--65664	6	7.2	6	100	0	86	65	34	0	0	0.93
85534--85609	24	3.2	24	96	1	136	34	19	27	18	1.95
86480--86509	15	1.9	16	93	6	53	43	0	13	43	1.43
86627--86744	52	2.3	52	96	0	218	37	3	25	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86954--87013	23	2.6	23	81	0	75	16	25	26	31	1.96

Tables:   1

The End!