Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003483.1 Hibiscus syriacus cultivar Beakdansim tig00007361_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71000

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2575--2619
19
2.4
19
88
3
65
22
8
4
64
1.40
2645--2688
21
2.1
21
91
0
70
54
0
6
38
1.27
3779--3845
22
3.1
21
89
6
82
37
7
16
38
1.77
3776--3845
23
3.1
22
91
4
104
38
7
15
38
1.75
4751--5104
111
3.2
111
93
2
590
26
16
13
43
1.85
5014--5195
93
2.0
91
89
2
274
23
12
14
50
1.77
9924--10004
34
2.4
35
85
4
103
39
2
18
39
1.64
10223--10294
37
2.0
36
83
8
92
47
4
1
47
1.30
12210--12248
18
2.2
18
100
0
78
7
15
20
56
1.63
14922--15024
3
32.0
3
69
16
55
34
2
3
58
1.31
14922--15024
13
7.7
13
72
13
66
34
2
3
58
1.31
14908--15000
26
3.5
26
71
11
80
32
3
6
58
1.40
14908--15025
56
2.1
55
84
1
146
33
3
5
57
1.39
14988--15043
26
2.2
26
86
0
76
35
5
3
55
1.40
20001--20183
91
2.0
90
82
14
223
29
24
18
28
1.98
22146--22185
21
1.9
21
90
10
64
55
5
7
32
1.50
28681--28768
45
1.9
46
90
2
142
28
23
19
28
1.98
30271--30311
18
2.3
18
91
0
64
14
7
9
68
1.39
30277--30314
18
2.1
18
100
0
76
10
10
10
68
1.40
30831--30863
10
3.3
10
95
0
57
78
0
9
12
0.95
31363--31419
10
5.7
10
83
4
71
36
10
19
33
1.86
31377--31425
10
4.9
10
87
0
71
32
10
20
36
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40185--40252
31
2.2
31
89
0
100
48
8
16
26
1.75
40198--40265
31
2.2
31
84
5
84
51
7
10
30
1.63
56569--56616
24
1.9
26
84
16
66
52
4
0
43
1.20
57547--57594
23
2.1
23
92
3
80
31
16
10
41
1.82
63278--63315
18
2.1
18
100
0
76
47
15
0
36
1.46
69445--69492
21
2.3
20
75
10
51
25
0
31
43
1.55
69487--69526
21
2.0
19
90
9
62
30
0
22
47
1.52
70114--70639
263
2.0
263
98
0
1025
26
22
19
31
1.98

Tables:   1

The End!