genome.fa.s3485.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003485.1 Hibiscus syriacus cultivar Beakdansim tig00007369_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123182

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1244--1325	33	2.5	33	84	4	94	32	46	4	15	1.68
988--1652	147	4.5	148	84	6	771	31	42	8	17	1.79
1377--1461	35	2.4	35	86	9	111	34	45	5	14	1.68
978--1543	292	1.9	291	86	2	805	30	42	9	18	1.81
1472--1588	45	2.6	46	81	8	123	38	39	7	14	1.75
1621--1798	98	1.8	98	81	7	227	30	47	3	17	1.66
1865--2280	48	8.7	48	71	11	232	27	47	4	20	1.68
1633--2119	142	3.4	144	83	6	560	31	45	4	18	1.69
2317--2363	18	2.6	18	100	0	94	25	51	0	23	1.49
2404--2526	46	2.6	48	79	5	124	23	56	0	20	1.43
16220--16303	41	2.1	39	84	4	105	35	21	16	26	1.94
16447--16479	17	1.9	17	93	0	57	33	21	18	27	1.96
16943--16994	25	2.1	25	100	0	104	23	11	15	50	1.76
17273--17305	2	16.5	2	100	0	66	48	0	0	51	1.00
22063--22109	25	2.0	24	84	12	62	27	6	14	51	1.67
28650--28950	33	9.1	33	95	0	532	29	32	17	19	1.95
29658--29716	15	3.7	15	73	20	57	38	11	33	15	1.84
29655--29729	33	2.3	33	95	0	132	34	12	38	14	1.83
29673--29729	18	3.3	18	68	22	50	33	12	38	15	1.85
30221--30272	27	1.9	27	88	0	77	28	19	21	30	1.97
33160--33187	2	14.0	2	100	0	56	50	0	0	50	1.00
37645--37747	42	2.5	42	91	0	170	31	18	15	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41825--41876	26	2.0	26	85	7	70	15	13	1	69	1.28
45984--46016	2	16.5	2	93	0	57	3	45	0	51	1.16
45984--46022	10	3.9	10	93	0	51	7	41	0	51	1.31
51683--51741	29	2.0	29	100	0	118	23	13	13	49	1.78
56368--56426	29	2.0	29	100	0	118	23	13	13	49	1.78
59118--59217	3	33.7	3	83	2	130	32	2	1	65	1.11
60828--60899	33	2.2	32	80	9	83	44	1	2	51	1.24
71990--72023	9	3.7	9	84	7	50	85	0	14	0	0.60
71984--72052	19	3.6	19	82	9	88	82	0	17	0	0.67
71987--72055	21	3.2	21	73	15	70	84	0	15	0	0.63
71984--72055	31	2.3	31	88	11	112	83	0	16	0	0.65
71984--72053	12	5.7	12	76	20	65	82	0	17	0	0.66
73200--73672	52	9.1	52	95	0	840	26	14	23	36	1.92
74290--74861	114	5.0	114	94	3	968	36	13	21	28	1.91
75177--75273	3	32.7	3	81	2	115	30	2	1	65	1.10
76918--76989	33	2.2	32	80	9	83	44	1	2	51	1.24
78266--78297	14	2.2	15	94	5	57	59	0	3	37	1.13
78263--78299	13	2.7	14	84	15	51	64	0	2	32	1.07
84147--84200	25	2.2	25	93	0	90	22	25	22	29	1.99
84393--84440	18	2.5	19	86	6	62	35	2	2	60	1.20
86490--86516	11	2.5	11	100	0	54	22	0	0	77	0.76
86682--87099	186	2.2	185	80	5	439	31	10	8	49	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91153--91202	23	2.2	23	100	0	100	16	8	8	68	1.38
93273--93322	2	25.0	2	100	0	100	50	0	0	50	1.00
93738--93778	13	3.2	13	78	0	55	63	2	12	21	1.40
97462--97502	21	1.9	21	85	5	55	34	9	21	34	1.87
98373--98420	17	2.8	17	100	0	96	22	16	29	31	1.96
106209--106238	15	1.9	16	93	6	53	53	6	6	33	1.53
118310--118347	19	2.0	19	100	0	76	21	26	10	42	1.85

Tables:   1

The End!