Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003486.1 Hibiscus syriacus cultivar Beakdansim tig00007370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87425

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4974--5029
2
28.0
2
100
0
112
50
0
0
50
1.00
7588--7614
2
13.5
2
100
0
54
48
0
0
51
1.00
8144--8186
23
1.9
22
85
4
59
58
0
0
41
0.98
8144--8188
22
2.0
22
83
8
56
60
0
0
40
0.97
9067--9099
17
2.1
16
88
11
50
57
0
6
36
1.23
21427--21473
20
2.5
19
86
13
62
65
2
4
27
1.22
25714--25821
2
54.0
2
100
0
216
50
0
50
0
1.00
27309--27370
24
2.6
24
86
0
88
12
11
22
53
1.71
28882--28956
10
7.7
10
68
21
52
9
10
21
58
1.59
28888--28952
16
4.1
16
91
0
112
7
10
23
58
1.57
30856--30882
2
13.5
2
100
0
54
48
0
0
51
1.00
39580--39607
2
14.0
2
100
0
56
50
0
0
50
1.00
40815--40881
15
4.5
15
83
7
75
31
1
5
61
1.29
42896--43021
20
6.2
20
75
9
105
42
21
19
16
1.89
42896--43008
62
1.9
57
88
5
154
42
22
19
15
1.89
45179--45237
27
2.2
27
96
0
109
38
28
10
22
1.86
46725--46749
2
12.5
2
100
0
50
48
0
0
52
1.00
46946--47006
32
1.9
32
96
0
113
19
21
18
40
1.91
53290--53790
128
3.9
128
96
0
896
22
24
20
31
1.98
54183--54287
33
3.2
32
81
11
131
38
2
4
54
1.36
54808--54901
21
4.5
21
92
5
129
20
26
35
18
1.95
54905--54952
21
2.3
21
85
0
60
22
12
39
25
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56674--56778
32
3.2
32
81
13
99
61
2
0
35
1.11
57736--57793
30
1.9
31
82
10
75
74
1
10
13
1.15
61179--61207
7
4.1
7
100
0
58
44
0
55
0
0.99
62046--63223
391
3.0
391
91
0
1892
37
13
13
35
1.84
63822--63896
4
18.8
4
97
0
141
24
0
25
50
1.49
72046--72084
6
6.5
6
96
0
51
15
15
7
61
1.55
72046--72084
12
3.2
12
92
0
60
15
15
7
61
1.55
72050--72085
6
6.0
6
96
0
54
16
16
5
61
1.53
80119--80197
36
2.2
36
88
4
117
30
5
20
44
1.73
82401--82428
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!